data_5ZJ
#

_chem_comp.id                                   5ZJ
_chem_comp.name                                 "6-{4-[3-chloro-4-(trifluoromethyl)phenyl]piperazine-1-carbonyl}pyrimidine-2,4(1H,3H)-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H14 Cl F3 N4 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-29
_chem_comp.pdbx_modified_date                   2021-11-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       402.756
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5ZJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7RMZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5ZJ  C20   C1   C   0  1  N  N  N  110.746  -6.839  106.064  -6.223   1.016  -0.715  C20   5ZJ   1  
5ZJ  C22   C2   C   0  1  N  N  N  110.268  -5.647  106.750  -5.319  -0.130  -0.860  C22   5ZJ   2  
5ZJ  C24   C3   C   0  1  N  N  N  100.629  -3.260  110.553   5.771   0.115   0.631  C24   5ZJ   3  
5ZJ  C13   C4   C   0  1  Y  N  N  102.107  -3.474  110.426   4.340  -0.172   0.252  C13   5ZJ   4  
5ZJ  C12   C5   C   0  1  Y  N  N  102.998  -2.654  111.122   3.717  -1.312   0.725  C12   5ZJ   5  
5ZJ  C14   C6   C   0  1  Y  N  N  102.657  -4.486  109.626   3.651   0.709  -0.563  C14   5ZJ   6  
5ZJ  C15   C7   C   0  1  Y  N  N  104.023  -4.677  109.516   2.340   0.448  -0.912  C15   5ZJ   7  
5ZJ  C17   C8   C   0  1  N  N  N  111.804  -7.555  108.195  -5.345   1.391   1.419  C17   5ZJ   8  
5ZJ  C1    C9   C   0  1  N  N  N  110.577  -5.463  108.062  -4.483  -0.429   0.169  C1    5ZJ   9  
5ZJ  C10   C10  C   0  1  Y  N  N  104.916  -3.838  110.218   1.714  -0.700  -0.442  C10   5ZJ  10  
5ZJ  C11   C11  C   0  1  Y  N  N  104.373  -2.824  111.029   2.407  -1.578   0.380  C11   5ZJ  11  
5ZJ  C2    C12  C   0  1  N  N  N  110.163  -4.291  108.913  -3.552  -1.578   0.067  C2    5ZJ  12  
5ZJ  C5    C13  C   0  1  N  N  N  108.161  -5.575  109.707  -1.460  -2.573  -0.740  C5    5ZJ  13  
5ZJ  C6    C14  C   0  1  N  N  N  106.775  -5.141  109.257  -0.072  -2.224  -0.190  C6    5ZJ  14  
5ZJ  C8    C15  C   0  1  N  N  N  107.189  -2.888  110.196  -0.489   0.153  -0.425  C8    5ZJ  15  
5ZJ  C9    C16  C   0  1  N  N  N  108.607  -3.323  110.545  -1.902  -0.099  -0.985  C9    5ZJ  16  
5ZJ  F25   F1   F   0  1  N  N  N  100.016  -3.043  109.361   5.837   1.337   1.311  F25   5ZJ  17  
5ZJ  F26   F2   F   0  1  N  N  N  100.014  -4.338  111.100   6.248  -0.906   1.460  F26   5ZJ  18  
5ZJ  F27   F3   F   0  1  N  N  N  100.342  -2.205  111.353   6.555   0.182  -0.525  F27   5ZJ  19  
5ZJ  N16   N1   N   0  1  N  N  N  111.312  -6.395  108.758  -4.509   0.346   1.308  N16   5ZJ  20  
5ZJ  N19   N2   N   0  1  N  N  N  111.489  -7.719  106.859  -6.192   1.729   0.431  N19   5ZJ  21  
5ZJ  N4    N3   N   0  1  N  N  N  109.050  -4.414  109.667  -2.352  -1.423  -0.529  N4    5ZJ  22  
5ZJ  N7    N4   N   0  1  N  N  N  106.291  -4.043  110.118   0.388  -0.966  -0.793  N7    5ZJ  23  
5ZJ  O18   O1   O   0  1  N  N  N  112.465  -8.372  108.828  -5.337   2.050   2.442  O18   5ZJ  24  
5ZJ  O21   O2   O   0  1  N  N  N  110.532  -7.117  104.880  -6.985   1.322  -1.613  O21   5ZJ  25  
5ZJ  O3    O3   O   0  1  N  N  N  110.797  -3.237  108.765  -3.869  -2.660   0.519  O3    5ZJ  26  
5ZJ  CL23  CL1  CL  0  0  N  N  N  101.613  -5.569  108.704   4.436   2.143  -1.149  CL23  5ZJ  27  
5ZJ  H1    H1   H   0  1  N  N  N  109.674  -4.916  106.222  -5.318  -0.723  -1.763  H1    5ZJ  28  
5ZJ  H2    H2   H   0  1  N  N  N  102.607  -1.867  111.749   4.256  -1.995   1.365  H2    5ZJ  29  
5ZJ  H3    H3   H   0  1  N  N  N  104.407  -5.470  108.892   1.802   1.136  -1.548  H3    5ZJ  30  
5ZJ  H4    H4   H   0  1  N  N  N  105.032  -2.172  111.584   1.922  -2.471   0.747  H4    5ZJ  31  
5ZJ  H5    H5   H   0  1  N  N  N  108.111  -5.968  110.733  -1.387  -2.789  -1.806  H5    5ZJ  32  
5ZJ  H6    H6   H   0  1  N  N  N  108.542  -6.356  109.033  -1.854  -3.443  -0.216  H6    5ZJ  33  
5ZJ  H7    H7   H   0  1  N  N  N  106.822  -4.794  108.214  -0.128  -2.110   0.892  H7    5ZJ  34  
5ZJ  H8    H8   H   0  1  N  N  N  106.084  -5.994  109.329   0.627  -3.023  -0.436  H8    5ZJ  35  
5ZJ  H9    H9   H   0  1  N  N  N  107.199  -2.374  109.224  -0.093   1.080  -0.841  H9    5ZJ  36  
5ZJ  H10   H10  H   0  1  N  N  N  106.823  -2.199  110.971  -0.537   0.233   0.661  H10   5ZJ  37  
5ZJ  H11   H11  H   0  1  N  N  N  108.631  -3.668  111.589  -2.584   0.668  -0.617  H11   5ZJ  38  
5ZJ  H12   H12  H   0  1  N  N  N  109.286  -2.466  110.426  -1.874  -0.072  -2.074  H12   5ZJ  39  
5ZJ  H13   H13  H   0  1  N  N  N  111.500  -6.222  109.725  -3.912   0.133   2.042  H13   5ZJ  40  
5ZJ  H14   H14  H   0  1  N  N  N  111.826  -8.550  106.416  -6.784   2.489   0.542  H14   5ZJ  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5ZJ  O21   C20  DOUB  N  N   1  
5ZJ  C20   C22  SING  N  N   2  
5ZJ  C20   N19  SING  N  N   3  
5ZJ  C22   C1   DOUB  N  N   4  
5ZJ  N19   C17  SING  N  N   5  
5ZJ  C1    N16  SING  N  N   6  
5ZJ  C1    C2   SING  N  N   7  
5ZJ  C17   N16  SING  N  N   8  
5ZJ  C17   O18  DOUB  N  N   9  
5ZJ  CL23  C14  SING  N  N  10  
5ZJ  O3    C2   DOUB  N  N  11  
5ZJ  C2    N4   SING  N  N  12  
5ZJ  C6    C5   SING  N  N  13  
5ZJ  C6    N7   SING  N  N  14  
5ZJ  F25   C24  SING  N  N  15  
5ZJ  C15   C14  DOUB  Y  N  16  
5ZJ  C15   C10  SING  Y  N  17  
5ZJ  C14   C13  SING  Y  N  18  
5ZJ  N4    C5   SING  N  N  19  
5ZJ  N4    C9   SING  N  N  20  
5ZJ  N7    C8   SING  N  N  21  
5ZJ  N7    C10  SING  N  N  22  
5ZJ  C8    C9   SING  N  N  23  
5ZJ  C10   C11  DOUB  Y  N  24  
5ZJ  C13   C24  SING  N  N  25  
5ZJ  C13   C12  DOUB  Y  N  26  
5ZJ  C24   F26  SING  N  N  27  
5ZJ  C24   F27  SING  N  N  28  
5ZJ  C11   C12  SING  Y  N  29  
5ZJ  C22   H1   SING  N  N  30  
5ZJ  C12   H2   SING  N  N  31  
5ZJ  C15   H3   SING  N  N  32  
5ZJ  C11   H4   SING  N  N  33  
5ZJ  C5    H5   SING  N  N  34  
5ZJ  C5    H6   SING  N  N  35  
5ZJ  C6    H7   SING  N  N  36  
5ZJ  C6    H8   SING  N  N  37  
5ZJ  C8    H9   SING  N  N  38  
5ZJ  C8    H10  SING  N  N  39  
5ZJ  C9    H11  SING  N  N  40  
5ZJ  C9    H12  SING  N  N  41  
5ZJ  N16   H13  SING  N  N  42  
5ZJ  N19   H14  SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5ZJ  SMILES            ACDLabs               12.01  "O=C(C1=CC(=O)NC(=O)N1)N1CCN(CC1)c1ccc(c(Cl)c1)C(F)(F)F"  
5ZJ  InChI             InChI                 1.03   "InChI=1S/C16H14ClF3N4O3/c17-11-7-9(1-2-10(11)16(18,19)20)23-3-5-24(6-4-23)14(26)12-8-13(25)22-15(27)21-12/h1-2,7-8H,3-6H2,(H2,21,22,25,27)"  
5ZJ  InChIKey          InChI                 1.03   RILFZGUYWVKTMS-UHFFFAOYSA-N  
5ZJ  SMILES_CANONICAL  CACTVS                3.385  "FC(F)(F)c1ccc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3"  
5ZJ  SMILES            CACTVS                3.385  "FC(F)(F)c1ccc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3"  
5ZJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)Cl)C(F)(F)F"  
5ZJ  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)Cl)C(F)(F)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5ZJ  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-{4-[3-chloro-4-(trifluoromethyl)phenyl]piperazine-1-carbonyl}pyrimidine-2,4(1H,3H)-dione"  
5ZJ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "6-[4-[3-chloranyl-4-(trifluoromethyl)phenyl]piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5ZJ  "Create component"  2021-07-29  RCSB  
5ZJ  "Initial release"   2021-11-10  RCSB  
##
