data_5YJ
#

_chem_comp.id                                   5YJ
_chem_comp.name                                 "6-[4-(3,5-dichloro-4-methylphenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H16 Cl2 N4 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-27
_chem_comp.pdbx_modified_date                   2021-11-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       383.229
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5YJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7RM2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5YJ  C1    C1   C   0  1  N  N  N  110.895  -3.676  108.518  -3.988   0.541  -0.007  C1    5YJ   1  
5YJ  C10   C2   C   0  1  Y  N  N  105.173  -2.039  110.688   2.200   0.121   0.562  C10   5YJ   2  
5YJ  C11   C3   C   0  1  Y  N  N  104.249  -2.634  109.817   2.977   1.127   0.002  C11   5YJ   3  
5YJ  C12   C4   C   0  1  Y  N  N  102.887  -2.370  109.965   4.265   0.852  -0.416  C12   5YJ   4  
5YJ  C13   C5   C   0  1  Y  N  N  102.352  -1.528  110.943   4.781  -0.425  -0.278  C13   5YJ   5  
5YJ  C14   C6   C   0  1  Y  N  N  103.318  -0.961  111.783   4.009  -1.429   0.279  C14   5YJ   6  
5YJ  C15   C7   C   0  1  Y  N  N  104.672  -1.190  111.684   2.720  -1.160   0.700  C15   5YJ   7  
5YJ  C17   C8   C   0  1  N  N  N  112.120  -5.756  108.744  -4.991  -0.796  -1.689  C17   5YJ   8  
5YJ  C2    C9   C   0  1  N  N  N  110.443  -2.481  109.322  -2.966   1.541   0.386  C2    5YJ   9  
5YJ  C20   C10  C   0  1  N  N  N  111.159  -5.078  106.583  -5.850  -0.939   0.481  C20   5YJ  10  
5YJ  C22   C11  C   0  1  N  N  N  110.654  -3.876  107.205  -4.852   0.045   0.916  C22   5YJ  11  
5YJ  C23   C12  C   0  1  N  N  N  100.893  -1.232  111.114   6.186  -0.721  -0.734  C23   5YJ  12  
5YJ  C5    C13  C   0  1  N  N  N  108.861  -1.519  111.022  -1.450  -0.294   0.975  C5    5YJ  13  
5YJ  C6    C14  C   0  1  N  N  N  107.443  -1.092  110.682  -0.067  -0.505   0.350  C6    5YJ  14  
5YJ  C8    C15  C   0  1  N  N  N  107.044  -3.278  109.690   0.555   1.805   0.751  C8    5YJ  15  
5YJ  C9    C16  C   0  1  N  N  N  108.456  -3.702  110.057  -0.806   2.111   1.398  C9    5YJ  16  
5YJ  N16   N1   N   0  1  N  N  N  111.608  -4.588  109.249  -4.073   0.109  -1.313  N16   5YJ  17  
5YJ  N19   N2   N   0  1  N  N  N  111.864  -5.935  107.412  -5.866  -1.321  -0.813  N19   5YJ  18  
5YJ  N4    N3   N   0  1  N  N  N  109.338  -2.538  110.086  -1.788   1.136   0.899  N4    5YJ  19  
5YJ  N7    N4   N   0  1  N  N  N  106.555  -2.261  110.618   0.900   0.397   0.990  N7    5YJ  20  
5YJ  O18   O1   O   0  1  N  N  N  112.746  -6.561  109.409  -5.033  -1.150  -2.851  O18   5YJ  21  
5YJ  O21   O2   O   0  1  N  N  N  111.012  -5.391  105.420  -6.644  -1.409   1.275  O21   5YJ  22  
5YJ  O3    O3   O   0  1  N  N  N  111.151  -1.481  109.232  -3.191   2.727   0.244  O3    5YJ  23  
5YJ  CL24  CL1  CL  0  0  N  N  N  102.786   0.123  113.064   4.661  -3.030   0.450  CL24  5YJ  24  
5YJ  CL25  CL2  CL  0  0  N  N  N  101.788  -3.153  108.826   5.237   2.109  -1.116  CL25  5YJ  25  
5YJ  H1    H1   H   0  1  N  N  N  104.591  -3.295  109.034   2.574   2.123  -0.106  H1    5YJ  26  
5YJ  H2    H2   H   0  1  N  N  N  105.350  -0.714  112.376   2.119  -1.944   1.135  H2    5YJ  27  
5YJ  H3    H3   H   0  1  N  N  N  110.095  -3.152  106.631  -4.806   0.367   1.946  H3    5YJ  28  
5YJ  H4    H4   H   0  1  N  N  N  100.448  -1.966  111.802   6.880  -0.548   0.088  H4    5YJ  29  
5YJ  H5    H5   H   0  1  N  N  N  100.770  -0.220  111.528   6.253  -1.762  -1.053  H5    5YJ  30  
5YJ  H6    H6   H   0  1  N  N  N  100.390  -1.292  110.138   6.443  -0.069  -1.569  H6    5YJ  31  
5YJ  H7    H7   H   0  1  N  N  N  108.878  -1.930  112.042  -2.192  -0.875   0.428  H7    5YJ  32  
5YJ  H8    H8   H   0  1  N  N  N  109.524  -0.643  110.969  -1.432  -0.610   2.018  H8    5YJ  33  
5YJ  H9    H9   H   0  1  N  N  N  107.442  -0.583  109.707   0.246  -1.538   0.499  H9    5YJ  34  
5YJ  H10   H10  H   0  1  N  N  N  107.077  -0.402  111.456  -0.114  -0.289  -0.717  H10   5YJ  35  
5YJ  H11   H11  H   0  1  N  N  N  107.044  -2.867  108.670   0.498   1.989  -0.322  H11   5YJ  36  
5YJ  H12   H12  H   0  1  N  N  N  106.381  -4.155  109.732   1.319   2.446   1.191  H12   5YJ  37  
5YJ  H13   H13  H   0  1  N  N  N  108.447  -4.177  111.049  -0.724   2.028   2.481  H13   5YJ  38  
5YJ  H14   H14  H   0  1  N  N  N  108.826  -4.420  109.310  -1.121   3.119   1.128  H14   5YJ  39  
5YJ  H15   H15  H   0  1  N  N  N  111.766  -4.389  110.216  -3.458   0.466  -1.973  H15   5YJ  40  
5YJ  H16   H16  H   0  1  N  N  N  112.222  -6.770  106.994  -6.520  -1.971  -1.116  H16   5YJ  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5YJ  O21   C20   DOUB  N  N   1  
5YJ  C20   C22   SING  N  N   2  
5YJ  C20   N19   SING  N  N   3  
5YJ  C22   C1    DOUB  N  N   4  
5YJ  N19   C17   SING  N  N   5  
5YJ  C1    N16   SING  N  N   6  
5YJ  C1    C2    SING  N  N   7  
5YJ  C17   N16   SING  N  N   8  
5YJ  C17   O18   DOUB  N  N   9  
5YJ  CL25  C12   SING  N  N  10  
5YJ  O3    C2    DOUB  N  N  11  
5YJ  C2    N4    SING  N  N  12  
5YJ  C8    C9    SING  N  N  13  
5YJ  C8    N7    SING  N  N  14  
5YJ  C11   C12   DOUB  Y  N  15  
5YJ  C11   C10   SING  Y  N  16  
5YJ  C12   C13   SING  Y  N  17  
5YJ  C9    N4    SING  N  N  18  
5YJ  N4    C5    SING  N  N  19  
5YJ  N7    C6    SING  N  N  20  
5YJ  N7    C10   SING  N  N  21  
5YJ  C6    C5    SING  N  N  22  
5YJ  C10   C15   DOUB  Y  N  23  
5YJ  C13   C23   SING  N  N  24  
5YJ  C13   C14   DOUB  Y  N  25  
5YJ  C15   C14   SING  Y  N  26  
5YJ  C14   CL24  SING  N  N  27  
5YJ  C11   H1    SING  N  N  28  
5YJ  C15   H2    SING  N  N  29  
5YJ  C22   H3    SING  N  N  30  
5YJ  C23   H4    SING  N  N  31  
5YJ  C23   H5    SING  N  N  32  
5YJ  C23   H6    SING  N  N  33  
5YJ  C5    H7    SING  N  N  34  
5YJ  C5    H8    SING  N  N  35  
5YJ  C6    H9    SING  N  N  36  
5YJ  C6    H10   SING  N  N  37  
5YJ  C8    H11   SING  N  N  38  
5YJ  C8    H12   SING  N  N  39  
5YJ  C9    H13   SING  N  N  40  
5YJ  C9    H14   SING  N  N  41  
5YJ  N16   H15   SING  N  N  42  
5YJ  N19   H16   SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5YJ  SMILES            ACDLabs               12.01  "O=C(C1=CC(=O)NC(=O)N1)N1CCN(CC1)c1cc(Cl)c(C)c(Cl)c1"  
5YJ  InChI             InChI                 1.03   "InChI=1S/C16H16Cl2N4O3/c1-9-11(17)6-10(7-12(9)18)21-2-4-22(5-3-21)15(24)13-8-14(23)20-16(25)19-13/h6-8H,2-5H2,1H3,(H2,19,20,23,25)"  
5YJ  InChIKey          InChI                 1.03   HKYIVHLRSLTYKM-UHFFFAOYSA-N  
5YJ  SMILES_CANONICAL  CACTVS                3.385  "Cc1c(Cl)cc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3"  
5YJ  SMILES            CACTVS                3.385  "Cc1c(Cl)cc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3"  
5YJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(cc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)Cl"  
5YJ  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(cc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)Cl"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5YJ  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-[4-(3,5-dichloro-4-methylphenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione"  
5YJ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "6-[4-[3,5-bis(chloranyl)-4-methyl-phenyl]piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5YJ  "Create component"  2021-07-27  RCSB  
5YJ  "Initial release"   2021-11-10  RCSB  
##
