data_4VJ
# 
_chem_comp.id                                    4VJ 
_chem_comp.name                                  "2-[(1S)-1-(3-chlorophenyl)-2-hydroxyethyl]-8-(2-{[(1S,3R)-3-hydroxycyclopentyl]amino}pyrimidin-4-yl)-2,3,4,5-tetrahydro-1H-pyrrolo[1,2-a][1,4]diazepin-1-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H28 Cl N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-06-05 
_chem_comp.pdbx_modified_date                    2015-09-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        481.975 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4VJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5BVF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4VJ O2  O1  O  0 1 N N N 10.137 -2.892 14.320 -3.001 1.388  1.407  O2   4VJ 1  
4VJ C11 C1  C  0 1 Y N N 14.322 -2.517 14.930 1.165  0.401  0.594  C11  4VJ 2  
4VJ C12 C2  C  0 1 Y N N 14.103 -2.735 16.235 0.711  -0.502 -0.346 C12  4VJ 3  
4VJ C13 C3  C  0 1 Y N N 15.619 -1.948 14.422 2.570  0.820  0.803  C13  4VJ 4  
4VJ C14 C4  C  0 1 Y N N 15.686 -1.121 13.301 2.894  1.744  1.802  C14  4VJ 5  
4VJ C15 C5  C  0 1 Y N N 16.934 -0.616 12.955 4.219  2.105  1.960  C15  4VJ 6  
4VJ C16 C6  C  0 1 Y N N 17.943 -1.774 14.726 4.801  0.696  0.230  C16  4VJ 7  
4VJ C17 C7  C  0 1 N N N 12.254 -3.320 17.698 -1.530 -1.461 -0.995 C17  4VJ 8  
4VJ C18 C8  C  0 1 N N N 11.829 -4.791 17.900 -2.037 -2.618 -0.125 C18  4VJ 9  
4VJ C19 C9  C  0 1 N N N 11.384 -5.423 16.560 -2.384 -2.101 1.270  C19  4VJ 10 
4VJ C20 C10 C  0 1 N N S 8.964  -4.966 15.813 -4.595 -0.867 1.322  C20  4VJ 11 
4VJ C21 C11 C  0 1 Y N N 8.674  -6.034 14.750 -5.161 -0.340 0.029  C21  4VJ 12 
4VJ C22 C12 C  0 1 Y N N 7.356  -6.436 14.556 -6.130 0.646  0.049  C22  4VJ 13 
4VJ C23 C13 C  0 1 Y N N 7.070  -7.401 13.595 -6.649 1.130  -1.138 C23  4VJ 14 
4VJ C24 C14 C  0 1 Y N N 8.072  -7.987 12.815 -6.198 0.626  -2.346 C24  4VJ 15 
4VJ C25 C15 C  0 1 Y N N 9.401  -7.596 13.013 -5.230 -0.359 -2.365 C25  4VJ 16 
4VJ C26 C16 C  0 1 Y N N 9.693  -6.628 13.985 -4.707 -0.838 -1.178 C26  4VJ 17 
4VJ C27 C17 C  0 1 N N N 8.395  -5.492 17.162 -5.083 -2.300 1.546  C27  4VJ 18 
4VJ C28 C18 C  0 1 N N S 19.020 -3.202 16.410 7.186  0.560  -0.386 C28  4VJ 19 
4VJ C29 C19 C  0 1 N N N 18.823 -2.669 17.851 7.982  0.327  -1.687 C29  4VJ 20 
4VJ C30 C20 C  0 1 N N R 19.218 -3.911 18.690 9.373  -0.151 -1.202 C30  4VJ 21 
4VJ CL1 CL1 CL 0 0 N N N 5.408  -7.869 13.387 -7.866 2.367  -1.113 CL33 4VJ 22 
4VJ N3  N1  N  0 1 Y N N 18.022 -0.951 13.679 5.136  1.569  1.168  N3   4VJ 23 
4VJ N5  N2  N  0 1 N N N 10.393 -4.640 15.799 -3.132 -0.854 1.257  N5   4VJ 24 
4VJ C31 C21 C  0 1 N N N 20.482 -4.456 17.951 9.022  -1.045 0.014  C31  4VJ 25 
4VJ C8  C22 C  0 1 Y N N 12.230 -3.133 15.220 -1.039 0.223  0.796  C8   4VJ 26 
4VJ O34 O2  O  0 1 N N N 19.502 -3.523 20.052 10.030 -0.912 -2.217 O34  4VJ 27 
4VJ C32 C23 C  0 1 N N N 20.419 -3.866 16.520 7.848  -0.312 0.695  C32  4VJ 28 
4VJ C10 C24 C  0 1 Y N N 13.070 -2.787 14.225 0.038  0.855  1.316  C10  4VJ 29 
4VJ C9  C25 C  0 1 N N N 10.824 -3.544 15.095 -2.460 0.321  1.183  C9   4VJ 30 
4VJ N1  N3  N  0 1 Y N N 12.855 -3.066 16.375 -0.621 -0.616 -0.219 N1   4VJ 31 
4VJ N7  N4  N  0 1 N N N 19.050 -2.114 15.423 5.791  0.155  -0.572 N7   4VJ 32 
4VJ O6  O3  O  0 1 N N N 8.759  -4.580 18.208 -4.748 -3.100 0.410  O6   4VJ 33 
4VJ N4  N5  N  0 1 Y N N 16.745 -2.264 15.095 3.545  0.319  0.048  N4   4VJ 34 
4VJ H1  H1  H  0 1 N N N 14.833 -2.651 17.027 1.324  -1.028 -1.063 H1   4VJ 35 
4VJ H2  H2  H  0 1 N N N 14.804 -0.883 12.725 2.127  2.167  2.434  H2   4VJ 36 
4VJ H3  H3  H  0 1 N N N 17.033 0.045  12.106 4.504  2.816  2.721  H3   4VJ 37 
4VJ H4  H4  H  0 1 N N N 12.990 -3.059 18.473 -1.002 -1.862 -1.860 H4   4VJ 38 
4VJ H5  H5  H  0 1 N N N 11.365 -2.681 17.807 -2.377 -0.864 -1.335 H5   4VJ 39 
4VJ H6  H6  H  0 1 N N N 10.992 -4.830 18.613 -2.927 -3.052 -0.582 H6   4VJ 40 
4VJ H7  H7  H  0 1 N N N 12.680 -5.360 18.302 -1.262 -3.379 -0.047 H7   4VJ 41 
4VJ H8  H8  H  0 1 N N N 10.946 -6.409 16.777 -2.976 -2.858 1.786  H8   4VJ 42 
4VJ H9  H9  H  0 1 N N N 12.276 -5.549 15.929 -1.458 -1.945 1.825  H9   4VJ 43 
4VJ H10 H10 H  0 1 N N N 8.396  -4.063 15.544 -4.928 -0.238 2.148  H10  4VJ 44 
4VJ H11 H11 H  0 1 N N N 6.562  -6.003 15.146 -6.482 1.038  0.992  H11  4VJ 45 
4VJ H12 H12 H  0 1 N N N 7.824  -8.730 12.071 -6.606 1.000  -3.273 H12  4VJ 46 
4VJ H13 H13 H  0 1 N N N 10.193 -8.035 12.424 -4.878 -0.752 -3.307 H13  4VJ 47 
4VJ H14 H14 H  0 1 N N N 10.719 -6.334 14.149 -3.950 -1.608 -1.193 H14  4VJ 48 
4VJ H15 H15 H  0 1 N N N 7.299  -5.562 17.098 -4.604 -2.713 2.434  H15  4VJ 49 
4VJ H16 H16 H  0 1 N N N 8.814  -6.486 17.377 -6.164 -2.299 1.683  H16  4VJ 50 
4VJ H17 H17 H  0 1 N N N 18.254 -3.953 16.167 7.236  1.610  -0.101 H17  4VJ 51 
4VJ H18 H18 H  0 1 N N N 19.485 -1.815 18.059 7.504  -0.443 -2.294 H18  4VJ 52 
4VJ H19 H19 H  0 1 N N N 17.779 -2.376 18.033 8.073  1.256  -2.250 H19  4VJ 53 
4VJ H20 H20 H  0 1 N N N 18.414 -4.660 18.647 9.988  0.696  -0.898 H20  4VJ 54 
4VJ H21 H21 H  0 1 N N N 20.460 -5.555 17.914 8.713  -2.036 -0.318 H21  4VJ 55 
4VJ H22 H22 H  0 1 N N N 21.398 -4.125 18.462 9.873  -1.118 0.691  H22  4VJ 56 
4VJ H23 H23 H  0 1 N N N 19.743 -4.291 20.557 10.905 -1.235 -1.963 H23  4VJ 57 
4VJ H24 H24 H  0 1 N N N 20.527 -4.663 15.770 8.219  0.315  1.505  H24  4VJ 58 
4VJ H25 H25 H  0 1 N N N 21.213 -3.118 16.377 7.130  -1.036 1.082  H25  4VJ 59 
4VJ H26 H26 H  0 1 N N N 12.868 -2.724 13.166 0.037  1.569  2.127  H26  4VJ 60 
4VJ H27 H27 H  0 1 N N N 19.745 -2.362 14.748 5.560  -0.491 -1.258 H27  4VJ 61 
4VJ H28 H28 H  0 1 N N N 8.415  -4.894 19.036 -5.027 -4.023 0.482  H28  4VJ 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4VJ C24 C25 DOUB Y N 1  
4VJ C24 C23 SING Y N 2  
4VJ C15 C14 DOUB Y N 3  
4VJ C15 N3  SING Y N 4  
4VJ C25 C26 SING Y N 5  
4VJ C14 C13 SING Y N 6  
4VJ CL1 C23 SING N N 7  
4VJ C23 C22 DOUB Y N 8  
4VJ N3  C16 DOUB Y N 9  
4VJ C26 C21 DOUB Y N 10 
4VJ C10 C11 SING Y N 11 
4VJ C10 C8  DOUB Y N 12 
4VJ O2  C9  DOUB N N 13 
4VJ C13 C11 SING N N 14 
4VJ C13 N4  DOUB Y N 15 
4VJ C22 C21 SING Y N 16 
4VJ C16 N4  SING Y N 17 
4VJ C16 N7  SING N N 18 
4VJ C21 C20 SING N N 19 
4VJ C11 C12 DOUB Y N 20 
4VJ C9  C8  SING N N 21 
4VJ C9  N5  SING N N 22 
4VJ C8  N1  SING Y N 23 
4VJ N7  C28 SING N N 24 
4VJ N5  C20 SING N N 25 
4VJ N5  C19 SING N N 26 
4VJ C20 C27 SING N N 27 
4VJ C12 N1  SING Y N 28 
4VJ N1  C17 SING N N 29 
4VJ C28 C32 SING N N 30 
4VJ C28 C29 SING N N 31 
4VJ C32 C31 SING N N 32 
4VJ C19 C18 SING N N 33 
4VJ C27 O6  SING N N 34 
4VJ C17 C18 SING N N 35 
4VJ C29 C30 SING N N 36 
4VJ C31 C30 SING N N 37 
4VJ C30 O34 SING N N 38 
4VJ C12 H1  SING N N 39 
4VJ C14 H2  SING N N 40 
4VJ C15 H3  SING N N 41 
4VJ C17 H4  SING N N 42 
4VJ C17 H5  SING N N 43 
4VJ C18 H6  SING N N 44 
4VJ C18 H7  SING N N 45 
4VJ C19 H8  SING N N 46 
4VJ C19 H9  SING N N 47 
4VJ C20 H10 SING N N 48 
4VJ C22 H11 SING N N 49 
4VJ C24 H12 SING N N 50 
4VJ C25 H13 SING N N 51 
4VJ C26 H14 SING N N 52 
4VJ C27 H15 SING N N 53 
4VJ C27 H16 SING N N 54 
4VJ C28 H17 SING N N 55 
4VJ C29 H18 SING N N 56 
4VJ C29 H19 SING N N 57 
4VJ C30 H20 SING N N 58 
4VJ C31 H21 SING N N 59 
4VJ C31 H22 SING N N 60 
4VJ O34 H23 SING N N 61 
4VJ C32 H24 SING N N 62 
4VJ C32 H25 SING N N 63 
4VJ C10 H26 SING N N 64 
4VJ N7  H27 SING N N 65 
4VJ O6  H28 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4VJ SMILES           ACDLabs              12.01 "O=C4N(CCCn3cc(c2nc(NC1CCC(C1)O)ncc2)cc34)C(CO)c5cc(ccc5)Cl" 
4VJ InChI            InChI                1.03  
"InChI=1S/C25H28ClN5O3/c26-18-4-1-3-16(11-18)23(15-32)31-10-2-9-30-14-17(12-22(30)24(31)34)21-7-8-27-25(29-21)28-19-5-6-20(33)13-19/h1,3-4,7-8,11-12,14,19-20,23,32-33H,2,5-6,9-10,13,15H2,(H,27,28,29)/t19-,20+,23+/m0/s1" 
4VJ InChIKey         InChI                1.03  ZQJZOIMPHMQLOK-MIZPHKNDSA-N 
4VJ SMILES_CANONICAL CACTVS               3.385 "OC[C@@H](N1CCCn2cc(cc2C1=O)c3ccnc(N[C@H]4CC[C@@H](O)C4)n3)c5cccc(Cl)c5" 
4VJ SMILES           CACTVS               3.385 "OC[CH](N1CCCn2cc(cc2C1=O)c3ccnc(N[CH]4CC[CH](O)C4)n3)c5cccc(Cl)c5" 
4VJ SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(cc(c1)Cl)[C@@H](CO)N2CCCn3cc(cc3C2=O)c4ccnc(n4)N[C@H]5CC[C@H](C5)O" 
4VJ SMILES           "OpenEye OEToolkits" 1.9.2 "c1cc(cc(c1)Cl)C(CO)N2CCCn3cc(cc3C2=O)c4ccnc(n4)NC5CCC(C5)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4VJ "SYSTEMATIC NAME" ACDLabs              12.01 "2-[(1S)-1-(3-chlorophenyl)-2-hydroxyethyl]-8-(2-{[(1S,3R)-3-hydroxycyclopentyl]amino}pyrimidin-4-yl)-2,3,4,5-tetrahydro-1H-pyrrolo[1,2-a][1,4]diazepin-1-one" 
4VJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[(1S)-1-(3-chlorophenyl)-2-oxidanyl-ethyl]-8-[2-[[(1S,3R)-3-oxidanylcyclopentyl]amino]pyrimidin-4-yl]-4,5-dihydro-3H-pyrrolo[1,2-a][1,4]diazepin-1-one"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4VJ "Create component" 2015-06-05 RCSB 
4VJ "Initial release"  2015-09-09 RCSB 
# 
