data_3YJ
# 
_chem_comp.id                                    3YJ 
_chem_comp.name                                  "11-[3,17beta-dihydroxyestra-1,3,5(10)-trien-7beta-yl]-N-methyl-N-propylundecanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H53 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-07 
_chem_comp.pdbx_modified_date                    2022-07-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        511.779 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3YJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7R62 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3YJ N1  N1  N 0 1 N N N -34.439 8.743  14.290 10.902 -0.201 0.230  N1  3YJ 1  
3YJ C4  C1  C 0 1 Y N N -27.530 2.023  26.698 -4.298 -3.605 0.775  C4  3YJ 2  
3YJ C5  C2  C 0 1 Y N N -28.826 1.622  26.870 -4.497 -2.242 0.601  C5  3YJ 3  
3YJ C6  C3  C 0 1 Y N N -29.157 0.194  27.048 -5.057 -1.780 -0.572 C6  3YJ 4  
3YJ C7  C4  C 0 1 N N N -29.999 2.755  26.789 -4.095 -1.328 1.728  C7  3YJ 5  
3YJ C8  C5  C 0 1 N N R -31.427 2.152  26.646 -4.009 0.124  1.260  C8  3YJ 6  
3YJ C10 C6  C 0 1 N N S -30.563 -0.172 27.131 -5.264 -0.316 -0.830 C10 3YJ 7  
3YJ C13 C7  C 0 1 N N N -32.360 -2.019 28.027 -6.697 1.455  -1.901 C13 3YJ 8  
3YJ C15 C8  C 0 1 N N N -34.044 1.384  27.919 -5.469 2.899  1.326  C15 3YJ 9  
3YJ C17 C9  C 0 1 N N S -34.654 -1.059 28.264 -6.902 3.658  -0.556 C17 3YJ 10 
3YJ C20 C10 C 0 1 N N N -32.025 3.043  24.357 -1.515 0.058  1.138  C20 3YJ 11 
3YJ C21 C11 C 0 1 N N N -32.161 2.787  22.841 -0.304 0.234  0.219  C21 3YJ 12 
3YJ C22 C12 C 0 1 N N N -32.503 4.007  22.029 0.980  -0.009 1.015  C22 3YJ 13 
3YJ C24 C13 C 0 1 N N N -32.700 4.901  19.706 3.474  -0.075 0.893  C24 3YJ 14 
3YJ C26 C14 C 0 1 N N N -32.940 5.627  17.334 5.969  -0.142 0.770  C26 3YJ 15 
3YJ C28 C15 C 0 1 N N N -32.750 7.415  15.645 8.464  -0.208 0.648  C28 3YJ 16 
3YJ C1  C16 C 0 1 Y N N -28.104 -0.709 27.131 -5.432 -2.681 -1.561 C1  3YJ 17 
3YJ C11 C17 C 0 1 N N S -33.046 0.521  27.542 -5.369 1.929  0.144  C11 3YJ 18 
3YJ C12 C18 C 0 1 N N S -33.304 -0.918 28.466 -6.743 2.142  -0.552 C12 3YJ 19 
3YJ C14 C19 C 0 1 N N N -30.776 -1.594 28.042 -6.517 -0.054 -1.652 C14 3YJ 20 
3YJ C16 C20 C 0 1 N N N -35.356 0.452  28.232 -6.127 4.154  0.690  C16 3YJ 21 
3YJ C18 C21 C 0 1 N N N -32.961 -0.578 29.933 -7.841 1.512  0.308  C18 3YJ 22 
3YJ C19 C22 C 0 1 N N N -31.555 1.808  25.137 -2.799 0.300  0.342  C19 3YJ 23 
3YJ C2  C23 C 0 1 Y N N -26.744 -0.339 27.005 -5.239 -4.035 -1.387 C2  3YJ 24 
3YJ C23 C24 C 0 1 N N N -32.395 3.661  20.536 2.191  0.167  0.097  C23 3YJ 25 
3YJ C25 C25 C 0 1 N N N -32.075 4.854  18.313 4.685  0.100  -0.026 C25 3YJ 26 
3YJ C27 C26 C 0 1 N N N -32.391 7.016  17.065 7.180  0.034  -0.149 C27 3YJ 27 
3YJ C29 C27 C 0 1 N N N -33.621 8.650  15.488 9.656  -0.035 -0.257 C29 3YJ 28 
3YJ C3  C28 C 0 1 Y N N -26.488 1.084  26.781 -4.666 -4.502 -0.213 C3  3YJ 29 
3YJ C30 C29 C 0 1 N N N -35.296 9.895  14.066 11.096 -0.550 1.640  C30 3YJ 30 
3YJ C31 C30 C 0 1 N N N -34.399 7.659  13.319 12.061 -0.039 -0.651 C31 3YJ 31 
3YJ C32 C31 C 0 1 N N N -34.142 8.169  11.901 12.521 1.420  -0.625 C32 3YJ 32 
3YJ C33 C32 C 0 1 N N N -34.914 7.353  10.870 13.731 1.589  -1.546 C33 3YJ 33 
3YJ C9  C33 C 0 1 N N R -31.561 0.984  27.572 -5.290 0.457  0.495  C9  3YJ 34 
3YJ O1  O1  O 0 1 N N N -25.151 1.421  26.652 -4.466 -5.834 -0.034 O1  3YJ 35 
3YJ O2  O2  O 0 1 N N N -35.371 -1.801 29.261 -8.283 4.010  -0.454 O2  3YJ 36 
3YJ O3  O3  O 0 1 N N N -33.616 9.501  16.314 9.495  0.253  -1.424 O3  3YJ 37 
3YJ H1  H1  H 0 1 N N N -27.307 3.061  26.498 -3.849 -3.968 1.687  H1  3YJ 38 
3YJ H2  H2  H 0 1 N N N -29.803 3.399  25.919 -4.831 -1.403 2.528  H2  3YJ 39 
3YJ H3  H3  H 0 1 N N N -29.965 3.359  27.708 -3.122 -1.637 2.109  H3  3YJ 40 
3YJ H4  H4  H 0 1 N N N -32.170 2.921  26.904 -3.915 0.784  2.124  H4  3YJ 41 
3YJ H5  H5  H 0 1 N N N -30.877 -0.453 26.115 -4.415 0.044  -1.411 H5  3YJ 42 
3YJ H6  H6  H 0 1 N N N -32.628 -2.314 27.002 -7.629 1.633  -2.437 H6  3YJ 43 
3YJ H7  H7  H 0 1 N N N -32.493 -2.877 28.702 -5.857 1.837  -2.481 H7  3YJ 44 
3YJ H8  H8  H 0 1 N N N -33.747 1.941  28.820 -6.104 2.487  2.111  H8  3YJ 45 
3YJ H9  H9  H 0 1 N N N -34.264 2.092  27.106 -4.481 3.138  1.717  H9  3YJ 46 
3YJ H10 H10 H 0 1 N N N -34.841 -1.508 27.278 -6.471 4.080  -1.464 H10 3YJ 47 
3YJ H11 H11 H 0 1 N N N -31.296 3.852  24.511 -1.522 -0.955 1.540  H11 3YJ 48 
3YJ H12 H12 H 0 1 N N N -33.005 3.352  24.749 -1.455 0.774  1.958  H12 3YJ 49 
3YJ H13 H13 H 0 1 N N N -32.954 2.040  22.689 -0.363 -0.482 -0.601 H13 3YJ 50 
3YJ H14 H14 H 0 1 N N N -31.205 2.387  22.473 -0.297 1.247  -0.183 H14 3YJ 51 
3YJ H15 H15 H 0 1 N N N -31.802 4.819  22.271 1.039  0.707  1.835  H15 3YJ 52 
3YJ H16 H16 H 0 1 N N N -33.530 4.328  22.260 0.973  -1.022 1.417  H16 3YJ 53 
3YJ H17 H17 H 0 1 N N N -32.310 5.782  20.236 3.534  0.640  1.713  H17 3YJ 54 
3YJ H18 H18 H 0 1 N N N -33.791 4.991  19.598 3.467  -1.088 1.294  H18 3YJ 55 
3YJ H19 H19 H 0 1 N N N -33.953 5.720  17.752 6.028  0.574  1.590  H19 3YJ 56 
3YJ H20 H20 H 0 1 N N N -32.985 5.073  16.385 5.962  -1.155 1.172  H20 3YJ 57 
3YJ H21 H21 H 0 1 N N N -33.283 6.570  15.185 8.523  0.507  1.468  H21 3YJ 58 
3YJ H22 H22 H 0 1 N N N -31.811 7.597  15.101 8.456  -1.222 1.049  H22 3YJ 59 
3YJ H23 H23 H 0 1 N N N -28.336 -1.750 27.301 -5.879 -2.317 -2.474 H23 3YJ 60 
3YJ H24 H24 H 0 1 N N N -33.241 0.212  26.504 -4.544 2.209  -0.511 H24 3YJ 61 
3YJ H25 H25 H 0 1 N N N -30.175 -2.404 27.604 -6.433 -0.569 -2.609 H25 3YJ 62 
3YJ H26 H26 H 0 1 N N N -30.453 -1.417 29.079 -7.385 -0.436 -1.115 H26 3YJ 63 
3YJ H27 H27 H 0 1 N N N -35.814 0.707  29.199 -6.815 4.616  1.399  H27 3YJ 64 
3YJ H28 H28 H 0 1 N N N -36.111 0.532  27.436 -5.360 4.869  0.393  H28 3YJ 65 
3YJ H29 H29 H 0 1 N N N -33.111 -1.468 30.561 -7.686 0.435  0.364  H29 3YJ 66 
3YJ H30 H30 H 0 1 N N N -31.911 -0.256 29.999 -7.806 1.937  1.311  H30 3YJ 67 
3YJ H31 H31 H 0 1 N N N -33.616 0.233  30.284 -8.814 1.716  -0.139 H31 3YJ 68 
3YJ H32 H32 H 0 1 N N N -32.286 0.996  25.009 -2.858 -0.415 -0.478 H32 3YJ 69 
3YJ H33 H33 H 0 1 N N N -30.576 1.485  24.753 -2.791 1.313  -0.060 H33 3YJ 70 
3YJ H34 H34 H 0 1 N N N -25.945 -1.062 27.070 -5.533 -4.729 -2.161 H34 3YJ 71 
3YJ H35 H35 H 0 1 N N N -33.117 2.868  20.290 2.131  -0.549 -0.724 H35 3YJ 72 
3YJ H36 H36 H 0 1 N N N -31.376 3.312  20.313 2.198  1.180  -0.305 H36 3YJ 73 
3YJ H37 H37 H 0 1 N N N -31.996 3.808  17.983 4.626  -0.615 -0.846 H37 3YJ 74 
3YJ H38 H38 H 0 1 N N N -31.072 5.304  18.348 4.693  1.114  -0.428 H38 3YJ 75 
3YJ H39 H39 H 0 1 N N N -31.297 7.011  17.183 7.120  -0.682 -0.969 H39 3YJ 76 
3YJ H40 H40 H 0 1 N N N -32.833 7.732  17.774 7.187  1.047  -0.550 H40 3YJ 77 
3YJ H41 H41 H 0 1 N N N -35.189 10.601 14.903 11.106 -1.634 1.748  H41 3YJ 78 
3YJ H42 H42 H 0 1 N N N -35.005 10.392 13.129 12.045 -0.141 1.987  H42 3YJ 79 
3YJ H43 H43 H 0 1 N N N -36.343 9.565  13.996 10.282 -0.133 2.233  H43 3YJ 80 
3YJ H44 H44 H 0 1 N N N -35.364 7.131  13.337 12.871 -0.682 -0.308 H44 3YJ 81 
3YJ H45 H45 H 0 1 N N N -33.594 6.963  13.597 11.785 -0.315 -1.669 H45 3YJ 82 
3YJ H46 H46 H 0 1 N N N -33.066 8.096  11.683 11.710 2.063  -0.969 H46 3YJ 83 
3YJ H47 H47 H 0 1 N N N -34.458 9.220  11.836 12.797 1.696  0.393  H47 3YJ 84 
3YJ H48 H48 H 0 1 N N N -34.708 7.744  9.863  13.455 1.314  -2.563 H48 3YJ 85 
3YJ H49 H49 H 0 1 N N N -34.600 6.300  10.926 14.059 2.629  -1.527 H49 3YJ 86 
3YJ H50 H50 H 0 1 N N N -35.992 7.425  11.078 14.542 0.947  -1.202 H50 3YJ 87 
3YJ H51 H51 H 0 1 N N N -31.305 1.293  28.596 -6.158 0.155  1.081  H51 3YJ 88 
3YJ H52 H52 H 0 1 N N N -24.617 0.640  26.740 -5.210 -6.292 0.382  H52 3YJ 89 
3YJ H53 H53 H 0 1 N N N -35.011 -2.678 29.324 -8.447 4.964  -0.451 H53 3YJ 90 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3YJ C33 C32 SING N N 1  
3YJ C32 C31 SING N N 2  
3YJ C31 N1  SING N N 3  
3YJ C30 N1  SING N N 4  
3YJ N1  C29 SING N N 5  
3YJ C29 C28 SING N N 6  
3YJ C29 O3  DOUB N N 7  
3YJ C28 C27 SING N N 8  
3YJ C27 C26 SING N N 9  
3YJ C26 C25 SING N N 10 
3YJ C25 C24 SING N N 11 
3YJ C24 C23 SING N N 12 
3YJ C23 C22 SING N N 13 
3YJ C22 C21 SING N N 14 
3YJ C21 C20 SING N N 15 
3YJ C20 C19 SING N N 16 
3YJ C19 C8  SING N N 17 
3YJ C8  C7  SING N N 18 
3YJ C8  C9  SING N N 19 
3YJ O1  C3  SING N N 20 
3YJ C4  C3  DOUB Y N 21 
3YJ C4  C5  SING Y N 22 
3YJ C3  C2  SING Y N 23 
3YJ C7  C5  SING N N 24 
3YJ C5  C6  DOUB Y N 25 
3YJ C2  C1  DOUB Y N 26 
3YJ C6  C1  SING Y N 27 
3YJ C6  C10 SING N N 28 
3YJ C10 C9  SING N N 29 
3YJ C10 C14 SING N N 30 
3YJ C11 C9  SING N N 31 
3YJ C11 C15 SING N N 32 
3YJ C11 C12 SING N N 33 
3YJ C15 C16 SING N N 34 
3YJ C13 C14 SING N N 35 
3YJ C13 C12 SING N N 36 
3YJ C16 C17 SING N N 37 
3YJ C17 C12 SING N N 38 
3YJ C17 O2  SING N N 39 
3YJ C12 C18 SING N N 40 
3YJ C4  H1  SING N N 41 
3YJ C7  H2  SING N N 42 
3YJ C7  H3  SING N N 43 
3YJ C8  H4  SING N N 44 
3YJ C10 H5  SING N N 45 
3YJ C13 H6  SING N N 46 
3YJ C13 H7  SING N N 47 
3YJ C15 H8  SING N N 48 
3YJ C15 H9  SING N N 49 
3YJ C17 H10 SING N N 50 
3YJ C20 H11 SING N N 51 
3YJ C20 H12 SING N N 52 
3YJ C21 H13 SING N N 53 
3YJ C21 H14 SING N N 54 
3YJ C22 H15 SING N N 55 
3YJ C22 H16 SING N N 56 
3YJ C24 H17 SING N N 57 
3YJ C24 H18 SING N N 58 
3YJ C26 H19 SING N N 59 
3YJ C26 H20 SING N N 60 
3YJ C28 H21 SING N N 61 
3YJ C28 H22 SING N N 62 
3YJ C1  H23 SING N N 63 
3YJ C11 H24 SING N N 64 
3YJ C14 H25 SING N N 65 
3YJ C14 H26 SING N N 66 
3YJ C16 H27 SING N N 67 
3YJ C16 H28 SING N N 68 
3YJ C18 H29 SING N N 69 
3YJ C18 H30 SING N N 70 
3YJ C18 H31 SING N N 71 
3YJ C19 H32 SING N N 72 
3YJ C19 H33 SING N N 73 
3YJ C2  H34 SING N N 74 
3YJ C23 H35 SING N N 75 
3YJ C23 H36 SING N N 76 
3YJ C25 H37 SING N N 77 
3YJ C25 H38 SING N N 78 
3YJ C27 H39 SING N N 79 
3YJ C27 H40 SING N N 80 
3YJ C30 H41 SING N N 81 
3YJ C30 H42 SING N N 82 
3YJ C30 H43 SING N N 83 
3YJ C31 H44 SING N N 84 
3YJ C31 H45 SING N N 85 
3YJ C32 H46 SING N N 86 
3YJ C32 H47 SING N N 87 
3YJ C33 H48 SING N N 88 
3YJ C33 H49 SING N N 89 
3YJ C33 H50 SING N N 90 
3YJ C9  H51 SING N N 91 
3YJ O1  H52 SING N N 92 
3YJ O2  H53 SING N N 93 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3YJ SMILES           ACDLabs              12.01 "CCCN(C)C(=O)CCCCCCCCCCC1Cc2cc(O)ccc2C2CCC3(C)C(CCC3O)C21"                                                                                                                                                             
3YJ InChI            InChI                1.03  "InChI=1S/C33H53NO3/c1-4-21-34(3)31(37)14-12-10-8-6-5-7-9-11-13-24-22-25-23-26(35)15-16-27(25)28-19-20-33(2)29(32(24)28)17-18-30(33)36/h15-16,23-24,28-30,32,35-36H,4-14,17-22H2,1-3H3/t24-,28-,29+,30+,32-,33+/m1/s1" 
3YJ InChIKey         InChI                1.03  UUJHTDRJNXJHMK-XEXYCPDTSA-N                                                                                                                                                                                            
3YJ SMILES_CANONICAL CACTVS               3.385 "CCCN(C)C(=O)CCCCCCCCCC[C@@H]1Cc2cc(O)ccc2[C@H]3CC[C@]4(C)[C@@H](O)CC[C@H]4[C@H]13"                                                                                                                                    
3YJ SMILES           CACTVS               3.385 "CCCN(C)C(=O)CCCCCCCCCC[CH]1Cc2cc(O)ccc2[CH]3CC[C]4(C)[CH](O)CC[CH]4[CH]13"                                                                                                                                            
3YJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCN(C)C(=O)CCCCCCCCCC[C@@H]1Cc2cc(ccc2[C@@H]3[C@@H]1[C@@H]4CC[C@@H]([C@]4(CC3)C)O)O"                                                                                                                                 
3YJ SMILES           "OpenEye OEToolkits" 2.0.7 "CCCN(C)C(=O)CCCCCCCCCCC1Cc2cc(ccc2C3C1C4CCC(C4(CC3)C)O)O"                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3YJ "SYSTEMATIC NAME" ACDLabs              12.01 "11-[3,17beta-dihydroxyestra-1,3,5(10)-trien-7beta-yl]-N-methyl-N-propylundecanamide"                                                                                              
3YJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-methyl-11-[(7~{R},8~{R},9~{S},13~{S},14~{S},17~{S})-13-methyl-3,17-bis(oxidanyl)-6,7,8,9,11,12,14,15,16,17-decahydrocyclopenta[a]phenanthren-7-yl]-~{N}-propyl-undecanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3YJ "Create component" 2021-07-07 RCSB 
3YJ "Initial release"  2022-07-06 RCSB 
# 
