data_2IJ
# 
_chem_comp.id                                    2IJ 
_chem_comp.name                                  "5-{(3S)-1-[(Z)-iminomethyl]piperidin-3-yl}-2-(4-phenoxyphenoxy)pyridine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H24 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-06-29 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        416.472 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2IJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7R61 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2IJ C2  C1  C 0 1 Y N N N N N 19.163 5.794  3.414  -0.528 1.584  -0.073 C2  2IJ 1  
2IJ C3  C2  C 0 1 Y N N N N N 19.004 5.726  1.942  -1.638 2.342  0.328  C3  2IJ 2  
2IJ C8  C3  C 0 1 N N N N N N 17.834 5.039  1.319  -1.519 3.798  0.535  C8  2IJ 3  
2IJ C11 C4  C 0 1 Y N N N N N 18.057 5.446  5.483  1.738  1.413  -0.570 C11 2IJ 4  
2IJ C12 C5  C 0 1 Y N N N N N 18.131 4.418  6.430  2.700  1.164  0.399  C12 2IJ 5  
2IJ C13 C6  C 0 1 Y N N N N N 17.947 4.679  7.779  3.788  0.367  0.103  C13 2IJ 6  
2IJ C14 C7  C 0 1 Y N N N N N 17.697 5.989  8.203  3.919  -0.186 -1.162 C14 2IJ 7  
2IJ C15 C8  C 0 1 Y N N N N N 17.644 7.014  7.254  2.958  0.063  -2.131 C15 2IJ 8  
2IJ C16 C9  C 0 1 Y N N N N N 17.832 6.763  5.908  1.870  0.860  -1.836 C16 2IJ 9  
2IJ O17 O1  O 0 1 N N N N N N 17.521 6.269  9.521  4.991  -0.971 -1.453 O17 2IJ 10 
2IJ C19 C10 C 0 1 Y N N N N N 16.604 7.747  11.162 7.136  -0.793 -0.439 C19 2IJ 11 
2IJ C20 C11 C 0 1 Y N N N N N 15.506 8.501  11.616 7.997  -1.120 0.590  C20 2IJ 12 
2IJ C21 C12 C 0 1 Y N N N N N 14.294 8.569  10.876 7.572  -1.947 1.613  C21 2IJ 13 
2IJ C22 C13 C 0 1 Y N N N N N 14.177 7.901  9.668  6.283  -2.448 1.610  C22 2IJ 14 
2IJ C24 C14 C 0 1 N N S N N N 21.965 7.692  0.831  -4.216 -0.419 0.522  C24 2IJ 15 
2IJ C27 C15 C 0 1 N N N N N N 24.594 8.607  0.096  -5.778 -2.915 0.535  C27 2IJ 16 
2IJ C30 C16 C 0 1 N N N N N N 23.325 10.738 0.126  -6.947 -1.761 -1.305 C30 2IJ 17 
2IJ N1  N1  N 0 1 Y N N N N N 20.214 6.459  3.967  -0.639 0.279  -0.258 N1  2IJ 18 
2IJ C4  C17 C 0 1 Y N N N N N 19.960 6.324  1.153  -2.862 1.692  0.527  C4  2IJ 19 
2IJ C5  C18 C 0 1 Y N N N N N 21.021 7.011  1.754  -2.921 0.325  0.320  C5  2IJ 20 
2IJ C6  C19 C 0 1 Y N N N N N 21.122 7.053  3.164  -1.780 -0.354 -0.070 C6  2IJ 21 
2IJ O7  O2  O 0 1 N N N N N N 18.226 5.192  4.160  0.664  2.194  -0.277 O7  2IJ 22 
2IJ O9  O3  O 0 1 N N N N N N 17.898 4.660  0.163  -0.451 4.352  0.358  O9  2IJ 23 
2IJ N10 N2  N 0 1 N N N N N N 16.654 4.929  2.045  -2.594 4.514  0.920  N10 2IJ 24 
2IJ C18 C20 C 0 1 Y N N N N N 16.462 7.040  9.963  5.840  -1.291 -0.442 C18 2IJ 25 
2IJ C23 C21 C 0 1 Y N N N N N 15.270 7.150  9.223  5.418  -2.125 0.583  C23 2IJ 26 
2IJ C25 C22 C 0 1 N N N N N N 22.981 6.754  0.161  -4.029 -1.485 1.603  C25 2IJ 27 
2IJ C26 C23 C 0 1 N N N N N N 23.882 7.576  -0.773 -5.352 -2.219 1.832  C26 2IJ 28 
2IJ N28 N3  N 0 1 N N N N N N 23.503 9.479  0.573  -5.819 -1.918 -0.544 N28 2IJ 29 
2IJ C29 C24 C 0 1 N N N N N N 22.651 8.837  1.566  -4.629 -1.093 -0.790 C29 2IJ 30 
2IJ N31 N4  N 0 1 N N N N N N 24.185 11.187 -0.696 -7.989 -2.493 -1.078 N31 2IJ 31 
2IJ H1  H1  H 0 1 N N N N N N 18.334 3.408  6.105  2.598  1.595  1.384  H1  2IJ 32 
2IJ H2  H2  H 0 1 N N N N N N 17.996 3.876  8.499  4.536  0.174  0.857  H2  2IJ 33 
2IJ H3  H3  H 0 1 N N N N N N 17.452 8.025  7.580  3.060  -0.368 -3.116 H3  2IJ 34 
2IJ H4  H4  H 0 1 N N N N N N 17.806 7.571  5.192  1.121  1.054  -2.590 H4  2IJ 35 
2IJ H5  H5  H 0 1 N N N N N N 17.527 7.715  11.721 7.469  -0.148 -1.239 H5  2IJ 36 
2IJ H6  H6  H 0 1 N N N N N N 15.586 9.041  12.548 9.004  -0.730 0.595  H6  2IJ 37 
2IJ H7  H7  H 0 1 N N N N N N 13.462 9.143  11.257 8.247  -2.201 2.417  H7  2IJ 38 
2IJ H8  H8  H 0 1 N N N N N N 13.269 7.958  9.087  5.953  -3.094 2.410  H8  2IJ 39 
2IJ H9  H9  H 0 1 N N N N N N 21.368 8.142  0.024  -4.993 0.281  0.831  H9  2IJ 40 
2IJ H10 H10 H 0 1 N N N N N N 25.105 8.122  0.940  -5.057 -3.694 0.285  H10 2IJ 41 
2IJ H11 H11 H 0 1 N N N N N N 25.324 9.180  -0.494 -6.766 -3.357 0.662  H11 2IJ 42 
2IJ H12 H12 H 0 1 N Y N N N N 22.489 11.339 0.452  -6.967 -1.025 -2.096 H12 2IJ 43 
2IJ H13 H13 H 0 1 N N N N N N 19.892 6.264  0.077  -3.739 2.243  0.832  H13 2IJ 44 
2IJ H14 H14 H 0 1 N N N N N N 21.953 7.577  3.613  -1.827 -1.421 -0.228 H14 2IJ 45 
2IJ H15 H15 H 0 1 N N N N N N 15.840 4.534  1.619  -3.446 4.072  1.061  H15 2IJ 46 
2IJ H16 H16 H 0 1 N N N N N N 16.619 5.245  2.993  -2.516 5.471  1.056  H16 2IJ 47 
2IJ H17 H17 H 0 1 N N N N N N 15.196 6.635  8.276  4.411  -2.517 0.581  H17 2IJ 48 
2IJ H18 H18 H 0 1 N N N N N N 22.448 5.988  -0.421 -3.269 -2.198 1.282  H18 2IJ 49 
2IJ H19 H19 H 0 1 N N N N N N 23.596 6.266  0.931  -3.712 -1.010 2.531  H19 2IJ 50 
2IJ H20 H20 H 0 1 N N N N N N 23.274 8.081  -1.538 -6.119 -1.503 2.129  H20 2IJ 51 
2IJ H21 H21 H 0 1 N N N N N N 24.618 6.921  -1.263 -5.224 -2.963 2.619  H21 2IJ 52 
2IJ H22 H22 H 0 1 N N N N N N 23.255 8.451  2.400  -4.859 -0.333 -1.536 H22 2IJ 53 
2IJ H23 H23 H 0 1 N N N N N N 21.906 9.548  1.951  -3.815 -1.724 -1.148 H23 2IJ 54 
2IJ H24 H24 H 0 1 N N N N N N 23.981 12.125 -0.977 -8.787 -2.382 -1.617 H24 2IJ 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2IJ C26 C27 SING N N 1  
2IJ C26 C25 SING N N 2  
2IJ N31 C30 DOUB N N 3  
2IJ C27 N28 SING N N 4  
2IJ C30 N28 SING N N 5  
2IJ C25 C24 SING N N 6  
2IJ O9  C8  DOUB N N 7  
2IJ N28 C29 SING N N 8  
2IJ C24 C29 SING N N 9  
2IJ C24 C5  SING N N 10 
2IJ C4  C5  DOUB Y N 11 
2IJ C4  C3  SING Y N 12 
2IJ C8  C3  SING N N 13 
2IJ C8  N10 SING N N 14 
2IJ C5  C6  SING Y N 15 
2IJ C3  C2  DOUB Y N 16 
2IJ C6  N1  DOUB Y N 17 
2IJ C2  N1  SING Y N 18 
2IJ C2  O7  SING N N 19 
2IJ O7  C11 SING N N 20 
2IJ C11 C16 DOUB Y N 21 
2IJ C11 C12 SING Y N 22 
2IJ C16 C15 SING Y N 23 
2IJ C12 C13 DOUB Y N 24 
2IJ C15 C14 DOUB Y N 25 
2IJ C13 C14 SING Y N 26 
2IJ C14 O17 SING N N 27 
2IJ C23 C22 DOUB Y N 28 
2IJ C23 C18 SING Y N 29 
2IJ O17 C18 SING N N 30 
2IJ C22 C21 SING Y N 31 
2IJ C18 C19 DOUB Y N 32 
2IJ C21 C20 DOUB Y N 33 
2IJ C19 C20 SING Y N 34 
2IJ C12 H1  SING N N 35 
2IJ C13 H2  SING N N 36 
2IJ C15 H3  SING N N 37 
2IJ C16 H4  SING N N 38 
2IJ C19 H5  SING N N 39 
2IJ C20 H6  SING N N 40 
2IJ C21 H7  SING N N 41 
2IJ C22 H8  SING N N 42 
2IJ C24 H9  SING N N 43 
2IJ C27 H10 SING N N 44 
2IJ C27 H11 SING N N 45 
2IJ C30 H12 SING N N 46 
2IJ C4  H13 SING N N 47 
2IJ C6  H14 SING N N 48 
2IJ N10 H15 SING N N 49 
2IJ N10 H16 SING N N 50 
2IJ C23 H17 SING N N 51 
2IJ C25 H18 SING N N 52 
2IJ C25 H19 SING N N 53 
2IJ C26 H20 SING N N 54 
2IJ C26 H21 SING N N 55 
2IJ C29 H22 SING N N 56 
2IJ C29 H23 SING N N 57 
2IJ N31 H24 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2IJ SMILES           ACDLabs              12.01 "N=CN1CCCC(C1)c1cc(C(N)=O)c(Oc2ccc(Oc3ccccc3)cc2)nc1"                                                                                                                                      
2IJ InChI            InChI                1.03  "InChI=1S/C24H24N4O3/c25-16-28-12-4-5-17(15-28)18-13-22(23(26)29)24(27-14-18)31-21-10-8-20(9-11-21)30-19-6-2-1-3-7-19/h1-3,6-11,13-14,16-17,25H,4-5,12,15H2,(H2,26,29)/b25-16-/t17-/m1/s1" 
2IJ InChIKey         InChI                1.03  CLMOAHOTUBCRAU-GGMUZDTOSA-N                                                                                                                                                                
2IJ SMILES_CANONICAL CACTVS               3.385 "NC(=O)c1cc(cnc1Oc2ccc(Oc3ccccc3)cc2)[C@@H]4CCCN(C4)C=N"                                                                                                                                   
2IJ SMILES           CACTVS               3.385 "NC(=O)c1cc(cnc1Oc2ccc(Oc3ccccc3)cc2)[CH]4CCCN(C4)C=N"                                                                                                                                     
2IJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\N1CCC[C@H](C1)c2cc(c(nc2)Oc3ccc(cc3)Oc4ccccc4)C(=O)N"                                                                                                                             
2IJ SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Oc2ccc(cc2)Oc3c(cc(cn3)C4CCCN(C4)C=N)C(=O)N"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2IJ "SYSTEMATIC NAME" ACDLabs              12.01 "5-{(3S)-1-[(Z)-iminomethyl]piperidin-3-yl}-2-(4-phenoxyphenoxy)pyridine-3-carboxamide" 
2IJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[(3~{S})-1-(iminomethyl)piperidin-3-yl]-2-(4-phenoxyphenoxy)pyridine-3-carboxamide"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2IJ "Create component"         2021-06-29 RCSB 
2IJ "Modify leaving atom flag" 2021-06-29 RCSB 
2IJ "Initial release"          2021-10-06 RCSB 
2IJ "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            2IJ 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C30 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
