data_13J
# 
_chem_comp.id                                    13J 
_chem_comp.name                                  "3-{4-amino-1-[(3S)-1-propanoylpiperidin-3-yl]-1H-pyrazolo[3,4-d]pyrimidin-3-yl}-N-[4-(propan-2-yl)phenyl]benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H33 N7 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-10-03 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        511.618 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     13J 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4HCV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
13J C4  C4  C 0 1 Y N N N N N 1.413  13.396 15.887 -6.587  2.191  -0.048 C4  13J 1  
13J C7  C7  C 0 1 Y N N N N N 2.633  11.152 14.842 -6.992  -0.529 0.273  C7  13J 2  
13J C6  C6  C 0 1 Y N N N N N 1.294  12.196 16.549 -5.521  1.372  0.266  C6  13J 3  
13J C9  C9  C 0 1 Y N N N N N 4.316  3.520  24.075 4.615   -3.738 -1.360 C9  13J 4  
13J C13 C13 C 0 1 Y N N N N N 2.122  13.484 14.709 -7.852  1.655  -0.201 C13 13J 5  
13J C20 C20 C 0 1 N N N N N N 9.176  6.519  23.353 4.536   2.779  -2.057 C20 13J 6  
13J C21 C21 C 0 1 N N N N N N 7.662  6.390  23.319 3.571   1.627  -1.768 C21 13J 7  
13J C8  C8  C 0 1 Y N N N N N 2.867  7.835  19.502 -0.979  -1.070 0.209  C8  13J 8  
13J C18 C18 C 0 1 N N N N N N 2.131  9.647  18.006 -3.411  -0.547 0.268  C18 13J 9  
13J C16 C16 C 0 1 Y N N N N N 4.930  5.008  22.559 3.582   -1.772 -0.758 C16 13J 10 
13J C19 C19 C 0 1 N N N N N N 10.279 5.498  20.408 6.462   2.809  0.901  C19 13J 11 
13J C26 C26 C 0 1 N N N N N N 1.485  14.831 12.679 -9.626  2.109  -1.874 C26 13J 12 
13J C1  C1  C 0 1 Y N N N N N 1.025  6.100  18.383 -1.351  -3.181 1.984  C1  13J 13 
13J C2  C2  C 0 1 Y N N N N N 1.897  5.666  19.366 -0.086  -2.896 1.507  C2  13J 14 
13J C3  C3  C 0 1 Y N N N N N 1.095  7.401  17.917 -2.431  -2.416 1.592  C3  13J 15 
13J C5  C5  C 0 1 Y N N N N N 2.733  12.361 14.170 -8.054  0.296  -0.040 C5  13J 16 
13J C10 C10 C 0 1 Y N N N N N 3.657  5.110  22.028 2.445   -2.509 -0.378 C10 13J 17 
13J C11 C11 C 0 1 Y N N N N N 2.822  6.517  19.951 0.107   -1.840 0.617  C11 13J 18 
13J C12 C12 C 0 1 Y N N N N N 2.012  8.268  18.496 -2.252  -1.358 0.697  C12 13J 19 
13J C14 C14 C 0 1 Y N N N N N 1.920  11.078 16.025 -5.719  0.006  0.423  C14 13J 20 
13J C15 C15 C 0 1 Y N N N N N 3.765  6.039  20.949 1.465   -1.537 0.106  C15 13J 21 
13J C17 C17 C 0 1 Y N N N N N 2.687  4.313  22.624 2.468   -3.905 -0.529 C17 13J 22 
13J C22 C22 C 0 1 N N N N N N 9.827  5.288  22.758 4.818   3.542  -0.759 C22 13J 23 
13J C23 C23 C 0 1 N N N N N N 7.934  4.938  21.244 4.492   1.398  0.542  C23 13J 24 
13J C24 C24 C 0 1 N N S N N N 7.156  6.080  21.911 4.213   0.660  -0.771 C24 13J 25 
13J C25 C25 C 0 1 N N N N N N 10.806 4.269  18.442 8.538   4.043  1.461  C25 13J 26 
13J C27 C27 C 0 1 N N N N N N 3.351  15.655 14.186 -10.070 2.462  0.560  C27 13J 27 
13J C28 C28 C 0 1 N N N N N N 9.817  5.288  19.005 7.279   4.037  0.592  C28 13J 28 
13J C29 C29 C 0 1 N N N N N N 2.102  14.833 14.062 -9.013  2.552  -0.543 C29 13J 29 
13J N30 N30 N 0 1 Y N N N N N 5.335  4.221  23.571 4.637   -2.429 -1.241 N30 13J 30 
13J N31 N31 N 0 1 Y N N N N N 3.038  3.523  23.660 3.568   -4.468 -1.020 N31 13J 31 
13J N32 N32 N 0 1 Y N N N N N 5.028  6.463  20.863 2.010   -0.348 0.006  N32 13J 32 
13J N33 N33 N 0 1 Y N N N N N 5.722  5.854  21.837 3.303   -0.460 -0.519 N33 13J 33 
13J N34 N34 N 0 1 N N N N N N 9.377  5.141  21.398 5.301   2.592  0.252  N34 13J 34 
13J N35 N35 N 0 1 N N N N N N 1.351  4.340  22.232 1.378   -4.674 -0.171 N35 13J 35 
13J N36 N36 N 0 1 N N N N N N 1.786  9.841  16.692 -4.642  -0.827 0.741  N36 13J 36 
13J O37 O37 O 0 1 N N N N N N 2.537  10.529 18.750 -3.254  0.373  -0.511 O37 13J 37 
13J O38 O38 O 0 1 N N N N N N 11.421 5.911  20.614 6.849   2.017  1.734  O38 13J 38 
13J H1  H1  H 0 1 N N N N N N 0.945  14.280 16.296 -6.433  3.253  -0.170 H1  13J 39 
13J H2  H2  H 0 1 N N N N N N 3.111  10.270 14.442 -7.150  -1.591 0.395  H2  13J 40 
13J H3  H3  H 0 1 N N N N N N 0.722  12.127 17.462 -4.533  1.792  0.389  H3  13J 41 
13J H4  H4  H 0 1 N N N N N N 4.545  2.877  24.912 5.488   -4.237 -1.756 H4  13J 42 
13J H5  H5  H 0 1 N N N N N N 9.506  6.635  24.396 5.469   2.381  -2.456 H5  13J 43 
13J H6  H6  H 0 1 N N N N N N 9.477  7.404  22.773 4.087   3.454  -2.786 H6  13J 44 
13J H7  H7  H 0 1 N N N N N N 7.215  7.336  23.659 2.648   2.023  -1.347 H7  13J 45 
13J H8  H8  H 0 1 N N N N N N 7.358  5.577  23.995 3.349   1.097  -2.695 H8  13J 46 
13J H9  H9  H 0 1 N N N N N N 3.572  8.526  19.940 -0.835  -0.251 -0.480 H9  13J 47 
13J H10 H10 H 0 1 N N N N N N 0.579  14.207 12.682 -10.466 2.758  -2.121 H10 13J 48 
13J H11 H11 H 0 1 N N N N N N 1.220  15.860 12.394 -8.873  2.173  -2.659 H11 13J 49 
13J H12 H12 H 0 1 N N N N N N 2.208  14.425 11.956 -9.975  1.080  -1.788 H12 13J 50 
13J H13 H13 H 0 1 N N N N N N 0.288  5.422  17.979 -1.494  -4.000 2.672  H13 13J 51 
13J H14 H14 H 0 1 N N N N N N 1.856  4.635  19.686 0.755   -3.499 1.818  H14 13J 52 
13J H15 H15 H 0 1 N N N N N N 0.449  7.735  17.119 -3.417  -2.643 1.968  H15 13J 53 
13J H16 H16 H 0 1 N N N N N N 3.279  12.427 13.240 -9.043  -0.120 -0.161 H16 13J 54 
13J H17 H17 H 0 1 N N N N N N 9.542  4.400  23.341 5.579   4.301  -0.940 H17 13J 55 
13J H18 H18 H 0 1 N N N N N N 10.921 5.402  22.776 3.903   4.018  -0.409 H18 13J 56 
13J H19 H19 H 0 1 N N N N N N 7.685  4.908  20.173 3.550   1.697  1.000  H19 13J 57 
13J H20 H20 H 0 1 N N N N N N 7.651  3.984  21.713 5.039   0.743  1.221  H20 13J 58 
13J H21 H21 H 0 1 N N N N N N 7.367  6.977  21.311 5.150   0.282  -1.182 H21 13J 59 
13J H22 H22 H 0 1 N N N N N N 10.547 4.045  17.397 8.254   4.051  2.513  H22 13J 60 
13J H23 H23 H 0 1 N N N N N N 11.824 4.683  18.487 9.129   3.152  1.250  H23 13J 61 
13J H24 H24 H 0 1 N N N N N N 10.759 3.345  19.037 9.129   4.931  1.238  H24 13J 62 
13J H25 H25 H 0 1 N N N N N N 3.727  15.598 15.218 -9.633  2.778  1.507  H25 13J 63 
13J H26 H26 H 0 1 N N N N N N 4.115  15.267 13.496 -10.910 3.111  0.312  H26 13J 64 
13J H27 H27 H 0 1 N N N N N N 3.127  16.702 13.934 -10.419 1.433  0.645  H27 13J 65 
13J H28 H28 H 0 1 N N N N N N 9.856  6.228  18.435 7.563   4.030  -0.460 H28 13J 66 
13J H29 H29 H 0 1 N N N N N N 8.792  4.890  18.986 6.688   4.929  0.803  H29 13J 67 
13J H30 H30 H 0 1 N N N N N N 1.370  15.392 14.663 -8.664  3.581  -0.629 H30 13J 68 
13J H31 H31 H 0 1 N N N N N N 0.819  3.728  22.818 0.513   -4.256 -0.035 H31 13J 69 
13J H32 H32 H 0 1 N N N N N N 0.998  5.272  22.315 1.477   -5.632 -0.056 H32 13J 70 
13J H33 H33 H 0 1 N N N N N N 1.420  9.064  16.179 -4.780  -1.606 1.302  H33 13J 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
13J C26 C29 SING N N 1  
13J C29 C27 SING N N 2  
13J C29 C13 SING N N 3  
13J C5  C13 DOUB Y N 4  
13J C5  C7  SING Y N 5  
13J C13 C4  SING Y N 6  
13J C7  C14 DOUB Y N 7  
13J C4  C6  DOUB Y N 8  
13J C14 C6  SING Y N 9  
13J C14 N36 SING N N 10 
13J N36 C18 SING N N 11 
13J C3  C1  DOUB Y N 12 
13J C3  C12 SING Y N 13 
13J C18 C12 SING N N 14 
13J C18 O37 DOUB N N 15 
13J C1  C2  SING Y N 16 
13J C25 C28 SING N N 17 
13J C12 C8  DOUB Y N 18 
13J C28 C19 SING N N 19 
13J C2  C11 DOUB Y N 20 
13J C8  C11 SING Y N 21 
13J C11 C15 SING N N 22 
13J C19 O38 DOUB N N 23 
13J C19 N34 SING N N 24 
13J N32 C15 DOUB Y N 25 
13J N32 N33 SING Y N 26 
13J C15 C10 SING Y N 27 
13J C23 N34 SING N N 28 
13J C23 C24 SING N N 29 
13J N34 C22 SING N N 30 
13J N33 C24 SING N N 31 
13J N33 C16 SING Y N 32 
13J C24 C21 SING N N 33 
13J C10 C16 DOUB Y N 34 
13J C10 C17 SING Y N 35 
13J N35 C17 SING N N 36 
13J C16 N30 SING Y N 37 
13J C17 N31 DOUB Y N 38 
13J C22 C20 SING N N 39 
13J C21 C20 SING N N 40 
13J N30 C9  DOUB Y N 41 
13J N31 C9  SING Y N 42 
13J C4  H1  SING N N 43 
13J C7  H2  SING N N 44 
13J C6  H3  SING N N 45 
13J C9  H4  SING N N 46 
13J C20 H5  SING N N 47 
13J C20 H6  SING N N 48 
13J C21 H7  SING N N 49 
13J C21 H8  SING N N 50 
13J C8  H9  SING N N 51 
13J C26 H10 SING N N 52 
13J C26 H11 SING N N 53 
13J C26 H12 SING N N 54 
13J C1  H13 SING N N 55 
13J C2  H14 SING N N 56 
13J C3  H15 SING N N 57 
13J C5  H16 SING N N 58 
13J C22 H17 SING N N 59 
13J C22 H18 SING N N 60 
13J C23 H19 SING N N 61 
13J C23 H20 SING N N 62 
13J C24 H21 SING N N 63 
13J C25 H22 SING N N 64 
13J C25 H23 SING N N 65 
13J C25 H24 SING N N 66 
13J C27 H25 SING N N 67 
13J C27 H26 SING N N 68 
13J C27 H27 SING N N 69 
13J C28 H28 SING N N 70 
13J C28 H29 SING N N 71 
13J C29 H30 SING N N 72 
13J N35 H31 SING N N 73 
13J N35 H32 SING N N 74 
13J N36 H33 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
13J SMILES           ACDLabs              12.01 "O=C(Nc1ccc(cc1)C(C)C)c5cccc(c3nn(c2ncnc(c23)N)C4CCCN(C(=O)CC)C4)c5"                                                                                                                                                           
13J InChI            InChI                1.03  "InChI=1S/C29H33N7O2/c1-4-24(37)35-14-6-9-23(16-35)36-28-25(27(30)31-17-32-28)26(34-36)20-7-5-8-21(15-20)29(38)33-22-12-10-19(11-13-22)18(2)3/h5,7-8,10-13,15,17-18,23H,4,6,9,14,16H2,1-3H3,(H,33,38)(H2,30,31,32)/t23-/m0/s1" 
13J InChIKey         InChI                1.03  OQUNLLPGZMGVNR-QHCPKHFHSA-N                                                                                                                                                                                                    
13J SMILES_CANONICAL CACTVS               3.370 "CCC(=O)N1CCC[C@@H](C1)n2nc(c3cccc(c3)C(=O)Nc4ccc(cc4)C(C)C)c5c(N)ncnc25"                                                                                                                                                      
13J SMILES           CACTVS               3.370 "CCC(=O)N1CCC[CH](C1)n2nc(c3cccc(c3)C(=O)Nc4ccc(cc4)C(C)C)c5c(N)ncnc25"                                                                                                                                                        
13J SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCC(=O)N1CCC[C@@H](C1)n2c3c(c(n2)c4cccc(c4)C(=O)Nc5ccc(cc5)C(C)C)c(ncn3)N"                                                                                                                                                    
13J SMILES           "OpenEye OEToolkits" 1.7.6 "CCC(=O)N1CCCC(C1)n2c3c(c(n2)c4cccc(c4)C(=O)Nc5ccc(cc5)C(C)C)c(ncn3)N"                                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
13J "SYSTEMATIC NAME" ACDLabs              12.01 "3-{4-amino-1-[(3S)-1-propanoylpiperidin-3-yl]-1H-pyrazolo[3,4-d]pyrimidin-3-yl}-N-[4-(propan-2-yl)phenyl]benzamide" 
13J "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[4-azanyl-1-[(3S)-1-propanoylpiperidin-3-yl]pyrazolo[3,4-d]pyrimidin-3-yl]-N-(4-propan-2-ylphenyl)benzamide"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
13J "Create component" 2012-10-03 RCSB 
13J "Initial release"  2012-11-09 RCSB 
13J "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            13J 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C25 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
