data_04J
#

_chem_comp.id                                   04J
_chem_comp.name                                 Aminopterin
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C19 H20 N8 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-(4-{[(2,4-diaminopteridin-6-yl)methyl]amino}benzoyl)-L-glutamic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-11-23
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       440.413
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    04J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3URW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
04J  C     C     C  0  1  N  N  N  19.846  -36.763   4.370    3.748   1.123   0.932  C     04J   1  
04J  N     N     N  0  1  N  N  N  20.558  -35.709   3.994    4.562   0.498   0.058  N     04J   2  
04J  O     O     O  0  1  N  N  N  20.449  -37.824   5.070    4.220   1.746   1.864  O     04J   3  
04J  N1    N1    N  0  1  Y  N  N  14.073  -35.710  -3.005   -7.929   0.491  -0.740  N1    04J   4  
04J  O1    O1    O  0  1  N  N  N  23.592  -33.986   4.784    5.772   2.592  -0.952  O1    04J   5  
04J  C2    C2    C  0  1  Y  N  N  13.012  -35.291  -3.777   -8.613  -0.353   0.007  C2    04J   6  
04J  O2    O2    O  0  1  N  N  N  21.616  -33.733   5.591    7.849   2.108  -0.372  O2    04J   7  
04J  N3    N3    N  0  1  Y  N  N  11.794  -35.017  -3.190   -8.048  -1.305   0.744  N3    04J   8  
04J  C4    C4    C  0  1  Y  N  N  11.624  -35.161  -1.827   -6.732  -1.464   0.771  C4    04J   9  
04J  N5    N5    N  0  1  Y  N  N  12.535  -35.713   0.322   -4.594  -0.635  -0.078  N5    04J  10  
04J  C6    C6    C  0  1  Y  N  N  13.602  -36.130   1.097   -3.914   0.208  -0.825  C6    04J  11  
04J  C7    C7    C  0  1  Y  N  N  14.823  -36.408   0.495   -4.571   1.184  -1.574  C7    04J  12  
04J  N8    N8    N  0  1  Y  N  N  14.978  -36.264  -0.870   -5.883   1.282  -1.549  N8    04J  13  
04J  C9    C9    C  0  1  N  N  N  13.433  -36.280   2.592   -2.410   0.119  -0.871  C9    04J  14  
04J  CA    CA    C  0  1  N  N  S  21.984  -35.687   4.256    6.015   0.569   0.232  CA    04J  15  
04J  CB    CB    C  0  1  N  N  N  22.756  -35.922   2.958    6.668  -0.646  -0.431  CB    04J  16  
04J  CD    CD    C  0  1  N  N  N  23.300  -38.361   2.840    6.878  -3.115  -0.354  CD    04J  17  
04J  CG    CG    C  0  1  N  N  N  23.839  -36.983   3.142    6.235  -1.919   0.299  CG    04J  18  
04J  CT    CT    C  0  1  N  N  N  22.421  -34.404   4.911    6.536   1.831  -0.407  CT    04J  19  
04J  N10   N10   N  0  1  N  N  N  14.301  -37.314   3.127   -1.842   0.870   0.252  N10   04J  20  
04J  C11   C11   C  0  1  Y  N  N  18.384  -36.852   4.039    2.285   1.057   0.754  C11   04J  21  
04J  C12   C12   C  0  1  Y  N  N  17.806  -38.113   3.965    1.440   1.709   1.656  C12   04J  22  
04J  C13   C13   C  0  1  Y  N  N  16.457  -38.246   3.665    0.075   1.646   1.487  C13   04J  23  
04J  C14   C14   C  0  1  Y  N  N  15.677  -37.121   3.430   -0.463   0.932   0.420  C14   04J  24  
04J  C15   C15   C  0  1  Y  N  N  16.250  -35.854   3.509    0.377   0.281  -0.480  C15   04J  25  
04J  C16   C16   C  0  1  Y  N  N  17.606  -35.716   3.811    1.742   0.346  -0.320  C16   04J  26  
04J  C4A   C4A   C  0  1  Y  N  N  12.691  -35.576  -1.044   -5.920  -0.554  -0.040  C4A   04J  27  
04J  C8A   C8A   C  0  1  Y  N  N  13.915  -35.851  -1.642   -6.593   0.435  -0.799  C8A   04J  28  
04J  NA2   NA2   N  0  1  N  N  N  13.156  -35.154  -5.089   -9.990  -0.243   0.025  NA2   04J  29  
04J  NA4   NA4   N  0  1  N  N  N  10.445  -34.896  -1.266   -6.149  -2.450   1.536  NA4   04J  30  
04J  OE1   OE1   O  0  1  N  N  N  22.952  -38.662   1.678    7.607  -2.965  -1.306  OE1   04J  31  
04J  OE2   OE2   O  0  1  N  N  N  23.190  -39.215   3.747    6.640  -4.348   0.121  OE2   04J  32  
04J  HN    HN    H  0  1  N  N  N  20.116  -34.938   3.535    4.186   0.001  -0.685  HN    04J  33  
04J  HO2   HO2   H  0  1  N  N  N  22.052  -32.959   5.926    8.136   2.929  -0.795  HO2   04J  34  
04J  H7    H7    H  0  1  N  N  N  15.656  -36.739   1.098   -3.996   1.868  -2.181  H7    04J  35  
04J  H9    H9    H  0  1  N  N  N  13.677  -35.323   3.077   -2.105  -0.925  -0.801  H9    04J  36  
04J  H9A   H9A   H  0  1  N  N  N  12.387  -36.544   2.808   -2.049   0.541  -1.809  H9A   04J  37  
04J  HA    HA    H  0  1  N  N  N  22.226  -36.514   4.940    6.255   0.575   1.295  HA    04J  38  
04J  HB    HB    H  0  1  N  N  N  22.055  -36.257   2.179    6.357  -0.701  -1.474  HB    04J  39  
04J  HBA   HBA   H  0  1  N  N  N  23.228  -34.979   2.646    7.752  -0.548  -0.380  HBA   04J  40  
04J  HG    HG    H  0  1  N  N  N  24.675  -36.766   2.461    6.546  -1.863   1.342  HG    04J  41  
04J  HGA   HGA   H  0  1  N  N  N  24.197  -36.956   4.182    5.151  -2.016   0.248  HGA   04J  42  
04J  HN10  HN10  H  0  0  N  N  N  13.875  -37.610   3.982   -2.428   1.323   0.879  HN10  04J  43  
04J  H12   H12   H  0  1  N  N  N  18.408  -38.992   4.141    1.857   2.262   2.485  H12   04J  44  
04J  H13   H13   H  0  1  N  N  N  16.012  -39.229   3.614   -0.578   2.150   2.184  H13   04J  45  
04J  H15   H15   H  0  1  N  N  N  15.644  -34.977   3.336   -0.044  -0.272  -1.307  H15   04J  46  
04J  H16   H16   H  0  1  N  N  N  18.051  -34.734   3.868    2.392  -0.160  -1.018  H16   04J  47  
04J  HNA2  HNA2  H  0  0  N  N  N  14.091  -35.395  -5.349  -10.429   0.442  -0.502  HNA2  04J  48  
04J  HNAA  HNAA  H  0  0  N  N  N  12.513  -35.758  -5.560  -10.518  -0.851   0.566  HNAA  04J  49  
04J  HNA4  HNA4  H  0  0  N  N  N   9.797  -34.606  -1.971   -6.703  -3.043   2.067  HNA4  04J  50  
04J  HNAB  HNAB  H  0  0  N  N  N  10.099  -35.718  -0.813   -5.184  -2.551   1.543  HNAB  04J  51  
04J  HOE2  HOE2  H  0  0  N  N  N  22.833  -40.018   3.385    7.075  -5.084  -0.331  HOE2  04J  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
04J  N    C     SING  N  N   1  
04J  C11  C     SING  N  N   2  
04J  C    O     DOUB  N  N   3  
04J  N    CA    SING  N  N   4  
04J  N    HN    SING  N  N   5  
04J  C2   N1    DOUB  Y  N   6  
04J  N1   C8A   SING  Y  N   7  
04J  O1   CT    DOUB  N  N   8  
04J  NA2  C2    SING  N  N   9  
04J  C2   N3    SING  Y  N  10  
04J  CT   O2    SING  N  N  11  
04J  O2   HO2   SING  N  N  12  
04J  N3   C4    DOUB  Y  N  13  
04J  C4   NA4   SING  N  N  14  
04J  C4   C4A   SING  Y  N  15  
04J  C4A  N5    SING  Y  N  16  
04J  N5   C6    DOUB  Y  N  17  
04J  C7   C6    SING  Y  N  18  
04J  C6   C9    SING  N  N  19  
04J  N8   C7    DOUB  Y  N  20  
04J  C7   H7    SING  N  N  21  
04J  C8A  N8    SING  Y  N  22  
04J  C9   N10   SING  N  N  23  
04J  C9   H9    SING  N  N  24  
04J  C9   H9A   SING  N  N  25  
04J  CB   CA    SING  N  N  26  
04J  CA   CT    SING  N  N  27  
04J  CA   HA    SING  N  N  28  
04J  CB   CG    SING  N  N  29  
04J  CB   HB    SING  N  N  30  
04J  CB   HBA   SING  N  N  31  
04J  OE1  CD    DOUB  N  N  32  
04J  CD   CG    SING  N  N  33  
04J  CD   OE2   SING  N  N  34  
04J  CG   HG    SING  N  N  35  
04J  CG   HGA   SING  N  N  36  
04J  N10  C14   SING  N  N  37  
04J  N10  HN10  SING  N  N  38  
04J  C16  C11   DOUB  Y  N  39  
04J  C12  C11   SING  Y  N  40  
04J  C13  C12   DOUB  Y  N  41  
04J  C12  H12   SING  N  N  42  
04J  C14  C13   SING  Y  N  43  
04J  C13  H13   SING  N  N  44  
04J  C14  C15   DOUB  Y  N  45  
04J  C15  C16   SING  Y  N  46  
04J  C15  H15   SING  N  N  47  
04J  C16  H16   SING  N  N  48  
04J  C8A  C4A   DOUB  Y  N  49  
04J  NA2  HNA2  SING  N  N  50  
04J  NA2  HNAA  SING  N  N  51  
04J  NA4  HNA4  SING  N  N  52  
04J  NA4  HNAB  SING  N  N  53  
04J  OE2  HOE2  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
04J  SMILES            ACDLabs               12.01  "O=C(O)C(NC(=O)c1ccc(cc1)NCc2nc3c(nc2)nc(nc3N)N)CCC(=O)O"  
04J  InChI             InChI                 1.03   "InChI=1S/C19H20N8O5/c20-15-14-16(27-19(21)26-15)23-8-11(24-14)7-22-10-3-1-9(2-4-10)17(30)25-12(18(31)32)5-6-13(28)29/h1-4,8,12,22H,5-7H2,(H,25,30)(H,28,29)(H,31,32)(H4,20,21,23,26,27)/t12-/m0/s1"  
04J  InChIKey          InChI                 1.03   TVZGACDUOSZQKY-LBPRGKRZSA-N  
04J  SMILES_CANONICAL  CACTVS                3.370  "Nc1nc(N)c2nc(CNc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)cnc2n1"  
04J  SMILES            CACTVS                3.370  "Nc1nc(N)c2nc(CNc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)cnc2n1"  
04J  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCc2cnc3c(n2)c(nc(n3)N)N"  
04J  SMILES            "OpenEye OEToolkits"  1.7.6  "c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)NCc2cnc3c(n2)c(nc(n3)N)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
04J  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-(4-{[(2,4-diaminopteridin-6-yl)methyl]amino}benzoyl)-L-glutamic acid"  
04J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2S)-2-[[4-[[2,4-bis(azanyl)pteridin-6-yl]methylamino]phenyl]carbonylamino]pentanedioic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
04J  "Create component"  2011-11-23  RCSB  
04J  "Modify name"       2012-01-19  RCSB  
04J  "Initial release"   2013-08-07  RCSB  
04J  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     04J
_pdbx_chem_comp_synonyms.name        "N-(4-{[(2,4-diaminopteridin-6-yl)methyl]amino}benzoyl)-L-glutamic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
