data_Z4I
# 
_chem_comp.id                                    Z4I 
_chem_comp.name                                  "2-(benzylamino)-N'-(difluoroacetyl)pyrimidine-5-carbohydrazide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H13 F2 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-06 
_chem_comp.pdbx_modified_date                    2023-09-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        321.282 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Z4I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GD4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Z4I N12 N1  N 0 1 Y N N 29.247 -5.544 -10.281 1.162  -0.357 -0.043 N12 Z4I 1  
Z4I C13 C1  C 0 1 Y N N 30.368 -5.018 -10.782 1.943  0.716  -0.032 C13 Z4I 2  
Z4I C15 C2  C 0 1 N N N 32.464 -5.247 -12.182 3.883  -0.802 0.012  C15 Z4I 3  
Z4I C17 C3  C 0 1 Y N N 34.277 -4.690 -10.478 6.053  -0.663 1.251  C17 Z4I 4  
Z4I C20 C4  C 0 1 Y N N 34.197 -7.266 -9.384  7.481  -0.599 -1.115 C20 Z4I 5  
Z4I C21 C5  C 0 1 Y N N 33.362 -6.924 -10.444 6.101  -0.672 -1.142 C21 Z4I 6  
Z4I C02 C6  C 0 1 N N N 25.999 -4.696 -5.449  -6.691 -0.572 -0.197 C02 Z4I 7  
Z4I C04 C7  C 0 1 N N N 25.869 -3.180 -5.368  -5.195 -0.756 -0.167 C04 Z4I 8  
Z4I C07 C8  C 0 1 N N N 28.593 -3.043 -7.526  -2.182 1.224  -0.116 C07 Z4I 9  
Z4I C08 C9  C 0 1 Y N N 29.218 -3.785 -8.729  -0.718 1.044  -0.086 C08 Z4I 10 
Z4I C09 C10 C 0 1 Y N N 30.385 -3.260 -9.278  0.142  2.149  -0.073 C09 Z4I 11 
Z4I C11 C11 C 0 1 Y N N 28.636 -4.951 -9.235  -0.152 -0.238 -0.070 C11 Z4I 12 
Z4I C16 C12 C 0 1 Y N N 33.404 -5.622 -10.997 5.387  -0.710 0.041  C16 Z4I 13 
Z4I C18 C13 C 0 1 Y N N 35.123 -5.029 -9.415  7.433  -0.578 1.278  C18 Z4I 14 
Z4I C19 C14 C 0 1 Y N N 35.080 -6.326 -8.866  8.147  -0.546 0.095  C19 Z4I 15 
Z4I F01 F1  F 0 1 N N N 26.695 -5.102 -4.361  -7.317 -1.819 -0.090 F01 Z4I 16 
Z4I F03 F2  F 0 1 N N N 24.740 -5.189 -5.355  -7.082 0.240  0.873  F03 Z4I 17 
Z4I N05 N2  N 0 1 N N N 26.484 -2.377 -6.372  -4.384 0.320  -0.155 N05 Z4I 18 
Z4I N06 N3  N 0 1 N N N 27.158 -3.037 -7.442  -2.994 0.148  -0.128 N06 Z4I 19 
Z4I N10 N4  N 0 1 Y N N 30.923 -3.916 -10.293 1.446  1.946  -0.047 N10 Z4I 20 
Z4I N14 N5  N 0 1 N N N 31.089 -5.648 -11.926 3.312  0.547  -0.005 N14 Z4I 21 
Z4I O22 O1  O 0 1 N N N 29.266 -2.506 -6.683  -2.657 2.344  -0.129 O22 Z4I 22 
Z4I O23 O2  O 0 1 N N N 25.267 -2.669 -4.494  -4.722 -1.873 -0.154 O23 Z4I 23 
Z4I H1  H1  H 0 1 N N N 32.819 -5.752 -13.092 3.570  -1.340 -0.883 H1  Z4I 24 
Z4I H2  H2  H 0 1 N N N 32.496 -4.158 -12.331 3.535  -1.334 0.897  H2  Z4I 25 
Z4I H3  H3  H 0 1 N N N 34.309 -3.694 -10.893 5.496  -0.688 2.176  H3  Z4I 26 
Z4I H4  H4  H 0 1 N N N 34.159 -8.261 -8.965  8.039  -0.574 -2.040 H4  Z4I 27 
Z4I H5  H5  H 0 1 N N N 32.678 -7.657 -10.847 5.581  -0.714 -2.088 H5  Z4I 28 
Z4I H6  H6  H 0 1 N N N 26.491 -4.978 -6.392  -6.980 -0.100 -1.136 H6  Z4I 29 
Z4I H7  H7  H 0 1 N N N 30.832 -2.356 -8.892  -0.255 3.154  -0.085 H7  Z4I 30 
Z4I H8  H8  H 0 1 N N N 27.734 -5.360 -8.806  -0.781 -1.115 -0.079 H8  Z4I 31 
Z4I H9  H9  H 0 1 N N N 35.809 -4.296 -9.016  7.953  -0.537 2.224  H9  Z4I 32 
Z4I H10 H10 H 0 1 N N N 35.731 -6.589 -8.045  9.225  -0.489 0.116  H10 Z4I 33 
Z4I H11 H11 H 0 1 N N N 26.444 -1.379 -6.328  -4.762 1.213  -0.166 H11 Z4I 34 
Z4I H12 H12 H 0 1 N N N 26.623 -3.504 -8.146  -2.615 -0.745 -0.117 H12 Z4I 35 
Z4I H13 H13 H 0 1 N N N 30.564 -5.448 -12.753 3.896  1.321  0.004  H13 Z4I 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Z4I C15 N14 SING N N 1  
Z4I C15 C16 SING N N 2  
Z4I N14 C13 SING N N 3  
Z4I C16 C17 DOUB Y N 4  
Z4I C16 C21 SING Y N 5  
Z4I C13 N10 DOUB Y N 6  
Z4I C13 N12 SING Y N 7  
Z4I C17 C18 SING Y N 8  
Z4I C21 C20 DOUB Y N 9  
Z4I N10 C09 SING Y N 10 
Z4I N12 C11 DOUB Y N 11 
Z4I C18 C19 DOUB Y N 12 
Z4I C20 C19 SING Y N 13 
Z4I C09 C08 DOUB Y N 14 
Z4I C11 C08 SING Y N 15 
Z4I C08 C07 SING N N 16 
Z4I C07 N06 SING N N 17 
Z4I C07 O22 DOUB N N 18 
Z4I N06 N05 SING N N 19 
Z4I N05 C04 SING N N 20 
Z4I C02 C04 SING N N 21 
Z4I C02 F03 SING N N 22 
Z4I C02 F01 SING N N 23 
Z4I C04 O23 DOUB N N 24 
Z4I C15 H1  SING N N 25 
Z4I C15 H2  SING N N 26 
Z4I C17 H3  SING N N 27 
Z4I C20 H4  SING N N 28 
Z4I C21 H5  SING N N 29 
Z4I C02 H6  SING N N 30 
Z4I C09 H7  SING N N 31 
Z4I C11 H8  SING N N 32 
Z4I C18 H9  SING N N 33 
Z4I C19 H10 SING N N 34 
Z4I N05 H11 SING N N 35 
Z4I N06 H12 SING N N 36 
Z4I N14 H13 SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Z4I SMILES           ACDLabs              12.01 "FC(F)C(=O)NNC(=O)c1cnc(NCc2ccccc2)nc1"                                                                                                   
Z4I InChI            InChI                1.06  "InChI=1S/C14H13F2N5O2/c15-11(16)13(23)21-20-12(22)10-7-18-14(19-8-10)17-6-9-4-2-1-3-5-9/h1-5,7-8,11H,6H2,(H,20,22)(H,21,23)(H,17,18,19)" 
Z4I InChIKey         InChI                1.06  WAERNYVSQGAOPC-UHFFFAOYSA-N                                                                                                               
Z4I SMILES_CANONICAL CACTVS               3.385 "FC(F)C(=O)NNC(=O)c1cnc(NCc2ccccc2)nc1"                                                                                                   
Z4I SMILES           CACTVS               3.385 "FC(F)C(=O)NNC(=O)c1cnc(NCc2ccccc2)nc1"                                                                                                   
Z4I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNc2ncc(cn2)C(=O)NNC(=O)C(F)F"                                                                                                 
Z4I SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNc2ncc(cn2)C(=O)NNC(=O)C(F)F"                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Z4I "SYSTEMATIC NAME" ACDLabs              12.01 "2-(benzylamino)-N'-(difluoroacetyl)pyrimidine-5-carbohydrazide"                        
Z4I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}'-[2,2-bis(fluoranyl)ethanoyl]-2-[(phenylmethyl)amino]pyrimidine-5-carbohydrazide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Z4I "Create component" 2023-03-06 RCSB 
Z4I "Initial release"  2023-10-04 RCSB 
# 
