data_YZI
# 
_chem_comp.id                                    YZI 
_chem_comp.name                                  "(3S,5S)-5-(aminomethyl)-N-(4-chloro-3-fluorophenyl)-1-(4-methylpiperazine-1-carbonyl)piperidine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H27 Cl F N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-06 
_chem_comp.pdbx_modified_date                    2023-06-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        411.901 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YZI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GCZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YZI C01 C1  C  0 1 N N N -1.402 13.675 -8.098  -7.906 1.909  1.360  C01 YZI 1  
YZI C03 C2  C  0 1 N N N -0.093 12.776 -9.571  -5.878 0.586  1.360  C03 YZI 2  
YZI C04 C3  C  0 1 N N N 0.607  13.699 -10.549 -4.897 -0.163 0.451  C04 YZI 3  
YZI C06 C4  C  0 1 N N N 0.009  16.121 -11.181 -2.970 0.883  -0.648 C06 YZI 4  
YZI C08 C5  C  0 1 N N N -2.267 16.985 -12.362 -0.748 0.246  0.159  C08 YZI 5  
YZI C09 C6  C  0 1 N N S -2.047 17.570 -13.769 0.101  -0.851 -0.492 C09 YZI 6  
YZI C10 C7  C  0 1 N N N -3.077 17.280 -14.881 1.550  -0.643 -0.135 C10 YZI 7  
YZI C13 C8  C  0 1 Y N N -3.469 16.817 -17.356 3.548  0.643  -0.264 C13 YZI 8  
YZI C14 C9  C  0 1 Y N N -4.831 16.961 -17.320 4.364  -0.479 -0.206 C14 YZI 9  
YZI C15 C10 C  0 1 Y N N -5.554 16.718 -18.469 5.722  -0.333 0.014  C15 YZI 10 
YZI C17 C11 C  0 1 Y N N -4.949 16.345 -19.633 6.266  0.932  0.176  C17 YZI 11 
YZI C19 C12 C  0 1 Y N N -3.596 16.209 -19.662 5.454  2.049  0.119  C19 YZI 12 
YZI C20 C13 C  0 1 Y N N -2.866 16.450 -18.521 4.098  1.908  -0.106 C20 YZI 13 
YZI C21 C14 C  0 1 N N N -1.855 19.002 -13.708 -0.360 -2.218 0.019  C21 YZI 14 
YZI C22 C15 C  0 1 N N S -0.514 19.175 -13.164 -1.822 -2.444 -0.372 C22 YZI 15 
YZI C23 C16 C  0 1 N N N -0.191 20.675 -13.043 -2.272 -3.824 0.111  C23 YZI 16 
YZI C25 C17 C  0 1 N N N -0.517 18.568 -11.765 -2.693 -1.365 0.280  C25 YZI 17 
YZI C27 C18 C  0 1 N N N -1.405 14.028 -11.489 -5.212 1.668  -1.258 C27 YZI 18 
YZI C28 C19 C  0 1 N N N -2.103 13.907 -10.142 -6.181 2.344  -0.282 C28 YZI 19 
YZI F16 F1  F  0 1 N N N -6.872 16.837 -18.476 6.517  -1.423 0.071  F16 YZI 20 
YZI N02 N1  N  0 1 N N N -1.376 13.153 -9.225  -6.845 1.318  0.532  N02 YZI 21 
YZI N05 N2  N  0 1 N N N -0.257 14.658 -11.103 -4.306 0.799  -0.491 N05 YZI 22 
YZI N07 N3  N  0 1 N N N -0.923 17.144 -11.734 -2.167 -0.045 -0.090 N07 YZI 23 
YZI N12 N4  N  0 1 N N N -2.599 17.069 -16.224 2.174  0.499  -0.486 N12 YZI 24 
YZI N24 N5  N  0 1 N N N 0.710  20.894 -11.904 -3.635 -4.090 -0.368 N24 YZI 25 
YZI O11 O1  O  0 1 N N N -4.198 17.252 -14.656 2.156  -1.503 0.469  O11 YZI 26 
YZI O26 O2  O  0 1 N N N 1.036  16.510 -10.774 -2.490 1.795  -1.292 O26 YZI 27 
YZI CL1 CL1 CL 0 0 N N N -5.867 16.032 -21.107 7.971  1.112  0.453  CL1 YZI 28 
YZI H1  H1  H  0 1 N N N -0.821 13.060 -7.395  -7.464 2.602  2.077  H1  YZI 29 
YZI H2  H2  H  0 1 N N N -0.965 14.683 -8.151  -8.608 2.446  0.722  H2  YZI 30 
YZI H3  H3  H  0 1 N N N -2.443 13.745 -7.750  -8.432 1.119  1.895  H3  YZI 31 
YZI H4  H4  H  0 1 N N N -0.142 11.775 -10.023 -6.407 -0.129 1.991  H4  YZI 32 
YZI H5  H5  H  0 1 N N N 0.509  12.734 -8.652  -5.330 1.289  1.987  H5  YZI 33 
YZI H6  H6  H  0 1 N N N 1.029  13.093 -11.364 -4.110 -0.614 1.056  H6  YZI 34 
YZI H7  H7  H  0 1 N N N 1.419  14.220 -10.021 -5.427 -0.940 -0.099 H7  YZI 35 
YZI H8  H8  H  0 1 N N N -3.033 17.551 -11.811 -0.562 0.264  1.232  H8  YZI 36 
YZI H9  H9  H  0 1 N N N -2.559 15.926 -12.413 -0.492 1.213  -0.273 H9  YZI 37 
YZI H10 H10 H  0 1 N N N -1.099 17.139 -14.124 -0.017 -0.808 -1.575 H10 YZI 38 
YZI H11 H11 H  0 1 N N N -5.329 17.259 -16.409 3.940  -1.463 -0.332 H11 YZI 39 
YZI H12 H12 H  0 1 N N N -3.098 15.914 -20.574 5.880  3.033  0.247  H12 YZI 40 
YZI H13 H13 H  0 1 N N N -1.791 16.346 -18.550 3.464  2.782  -0.151 H13 YZI 41 
YZI H14 H14 H  0 1 N N N -1.926 19.446 -14.712 0.259  -2.998 -0.424 H14 YZI 42 
YZI H15 H15 H  0 1 N N N -2.603 19.466 -13.049 -0.265 -2.251 1.104  H15 YZI 43 
YZI H16 H16 H  0 1 N N N 0.238  18.677 -13.793 -1.922 -2.387 -1.456 H16 YZI 44 
YZI H17 H17 H  0 1 N N N 0.296  21.020 -13.967 -1.596 -4.584 -0.280 H17 YZI 45 
YZI H18 H18 H  0 1 N N N -1.123 21.239 -12.887 -2.258 -3.851 1.200  H18 YZI 46 
YZI H19 H19 H  0 1 N N N 0.498  18.649 -11.349 -3.720 -1.462 -0.073 H19 YZI 47 
YZI H20 H20 H  0 1 N N N -1.216 19.142 -11.139 -2.665 -1.479 1.364  H20 YZI 48 
YZI H21 H21 H  0 1 N N N -1.987 14.636 -12.197 -5.773 1.069  -1.975 H21 YZI 49 
YZI H22 H22 H  0 1 N N N -1.201 13.043 -11.933 -4.633 2.427  -1.785 H22 YZI 50 
YZI H23 H23 H  0 1 N N N -2.250 14.916 -9.730  -5.628 3.023  0.367  H23 YZI 51 
YZI H24 H24 H  0 1 N N N -3.081 13.428 -10.295 -6.929 2.905  -0.843 H24 YZI 52 
YZI H26 H26 H  0 1 N N N -1.612 17.098 -16.384 1.670  1.221  -0.893 H26 YZI 53 
YZI H27 H27 H  0 1 N N N 0.919  21.869 -11.826 -3.956 -4.996 -0.062 H27 YZI 54 
YZI H28 H28 H  0 1 N N N 0.267  20.580 -11.064 -4.270 -3.363 -0.072 H28 YZI 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YZI CL1 C17 SING N N 1  
YZI C19 C17 DOUB Y N 2  
YZI C19 C20 SING Y N 3  
YZI C17 C15 SING Y N 4  
YZI C20 C13 DOUB Y N 5  
YZI F16 C15 SING N N 6  
YZI C15 C14 DOUB Y N 7  
YZI C13 C14 SING Y N 8  
YZI C13 N12 SING N N 9  
YZI N12 C10 SING N N 10 
YZI C10 O11 DOUB N N 11 
YZI C10 C09 SING N N 12 
YZI C09 C21 SING N N 13 
YZI C09 C08 SING N N 14 
YZI C21 C22 SING N N 15 
YZI C22 C23 SING N N 16 
YZI C22 C25 SING N N 17 
YZI C23 N24 SING N N 18 
YZI C08 N07 SING N N 19 
YZI C25 N07 SING N N 20 
YZI N07 C06 SING N N 21 
YZI C27 N05 SING N N 22 
YZI C27 C28 SING N N 23 
YZI C06 N05 SING N N 24 
YZI C06 O26 DOUB N N 25 
YZI N05 C04 SING N N 26 
YZI C04 C03 SING N N 27 
YZI C28 N02 SING N N 28 
YZI C03 N02 SING N N 29 
YZI N02 C01 SING N N 30 
YZI C01 H1  SING N N 31 
YZI C01 H2  SING N N 32 
YZI C01 H3  SING N N 33 
YZI C03 H4  SING N N 34 
YZI C03 H5  SING N N 35 
YZI C04 H6  SING N N 36 
YZI C04 H7  SING N N 37 
YZI C08 H8  SING N N 38 
YZI C08 H9  SING N N 39 
YZI C09 H10 SING N N 40 
YZI C14 H11 SING N N 41 
YZI C19 H12 SING N N 42 
YZI C20 H13 SING N N 43 
YZI C21 H14 SING N N 44 
YZI C21 H15 SING N N 45 
YZI C22 H16 SING N N 46 
YZI C23 H17 SING N N 47 
YZI C23 H18 SING N N 48 
YZI C25 H19 SING N N 49 
YZI C25 H20 SING N N 50 
YZI C27 H21 SING N N 51 
YZI C27 H22 SING N N 52 
YZI C28 H23 SING N N 53 
YZI C28 H24 SING N N 54 
YZI N12 H26 SING N N 55 
YZI N24 H27 SING N N 56 
YZI N24 H28 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YZI SMILES           ACDLabs              12.01 "O=C(N1CCN(C)CC1)N1CC(CC(CN)C1)C(=O)Nc1ccc(Cl)c(F)c1"                                                                                                                   
YZI InChI            InChI                1.06  "InChI=1S/C19H27ClFN5O2/c1-24-4-6-25(7-5-24)19(28)26-11-13(10-22)8-14(12-26)18(27)23-15-2-3-16(20)17(21)9-15/h2-3,9,13-14H,4-8,10-12,22H2,1H3,(H,23,27)/t13-,14-/m0/s1" 
YZI InChIKey         InChI                1.06  JAKJXJBBYMLBJM-KBPBESRZSA-N                                                                                                                                             
YZI SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)C(=O)N2C[C@H](CN)C[C@@H](C2)C(=O)Nc3ccc(Cl)c(F)c3"                                                                                                          
YZI SMILES           CACTVS               3.385 "CN1CCN(CC1)C(=O)N2C[CH](CN)C[CH](C2)C(=O)Nc3ccc(Cl)c(F)c3"                                                                                                             
YZI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)N2C[C@@H](C[C@@H](C2)C(=O)Nc3ccc(c(c3)F)Cl)CN"                                                                                                         
YZI SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)N2CC(CC(C2)C(=O)Nc3ccc(c(c3)F)Cl)CN"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YZI "SYSTEMATIC NAME" ACDLabs              12.01 "(3S,5S)-5-(aminomethyl)-N-(4-chloro-3-fluorophenyl)-1-(4-methylpiperazine-1-carbonyl)piperidine-3-carboxamide"                   
YZI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},5~{S})-5-(aminomethyl)-~{N}-(4-chloranyl-3-fluoranyl-phenyl)-1-(4-methylpiperazin-1-yl)carbonyl-piperidine-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YZI "Create component" 2023-03-06 RCSB 
YZI "Initial release"  2023-06-07 RCSB 
# 
