data_Y3I
# 
_chem_comp.id                                    Y3I 
_chem_comp.name                                  "(3P)-3-{4-[(3R,5S)-3-amino-5-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H19 Cl N6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-03 
_chem_comp.pdbx_modified_date                    2023-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        366.847 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y3I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FJZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y3I C1  C1  C  0 1 N N N 53.004 16.670 38.134 1.852  4.057  -1.038 C1  Y3I 1  
Y3I C4  C2  C  0 1 Y N N 51.923 14.163 35.608 0.294  2.402  1.900  C4  Y3I 2  
Y3I C5  C3  C  0 1 Y N N 52.125 15.378 36.240 0.720  3.385  1.029  C5  Y3I 3  
Y3I C3  C4  C  0 1 Y N N 52.423 12.997 36.158 0.549  1.072  1.629  C3  Y3I 4  
Y3I C7  C5  C  0 1 Y N N 53.352 14.251 37.993 1.671  1.696  -0.413 C7  Y3I 5  
Y3I C11 C6  C  0 1 Y N N 55.176 8.147  36.811 -0.737 -4.041 -0.726 C11 Y3I 6  
Y3I C6  C7  C  0 1 Y N N 52.832 15.421 37.443 1.412  3.038  -0.134 C6  Y3I 7  
Y3I C13 C8  C  0 1 Y N N 54.276 10.620 37.311 0.520  -1.753 -0.134 C13 Y3I 8  
Y3I C8  C9  C  0 1 Y N N 53.143 13.030 37.355 1.239  0.712  0.471  C8  Y3I 9  
Y3I C9  C10 C  0 1 Y N N 53.647 11.769 37.967 1.511  -0.716 0.182  C9  Y3I 10 
Y3I C12 C11 C  0 1 Y N N 54.333 9.615  38.265 1.245  -2.941 -0.329 C12 Y3I 11 
Y3I C14 C12 C  0 1 Y N N 54.778 10.253 36.023 -0.875 -1.785 -0.266 C14 Y3I 12 
Y3I C10 C13 C  0 1 Y N N 53.429 11.390 39.252 2.725  -1.323 0.158  C10 Y3I 13 
Y3I C17 C14 C  0 1 N N N 55.607 13.051 32.828 -4.023 0.976  -0.038 C17 Y3I 14 
Y3I C15 C15 C  0 1 N N N 55.571 12.470 35.264 -2.260 -0.219 -1.341 C15 Y3I 15 
Y3I C2  C16 C  0 1 N N N 55.340 10.667 33.663 -2.632 -0.834 0.973  C2  Y3I 16 
Y3I C16 C17 C  0 1 N N S 55.227 13.554 34.226 -2.966 1.124  -1.135 C16 Y3I 17 
Y3I C18 C18 C  0 1 N N R 55.007 11.637 32.522 -3.349 0.490  1.248  C18 Y3I 18 
Y3I C19 C19 C  0 1 N N N 55.958 14.858 34.548 -3.640 1.551  -2.440 C19 Y3I 19 
Y3I N1  N1  N  0 1 N N N 53.109 17.673 38.669 2.202  4.866  -1.756 N1  Y3I 20 
Y3I N4  N2  N  0 1 Y N N 54.764 8.361  38.064 0.574  -4.054 -0.622 N4  Y3I 21 
Y3I N3  N3  N  0 1 Y N N 55.221 9.000  35.785 -1.455 -2.946 -0.555 N3  Y3I 22 
Y3I N2  N4  N  0 1 Y N N 53.826 10.104 39.438 2.570  -2.647 -0.146 N2  Y3I 23 
Y3I N5  N5  N  0 1 N N N 54.917 11.193 34.966 -1.631 -0.640 -0.083 N5  Y3I 24 
Y3I N6  N6  N  0 1 N N N 55.583 11.129 31.236 -4.365 0.291  2.290  N6  Y3I 25 
Y3I CL1 CL1 CL 0 0 N N N 52.777 12.270 40.553 4.242  -0.538 0.466  CL1 Y3I 26 
Y3I H1  H1  H  0 1 N N N 51.372 14.126 34.680 -0.236 2.675  2.801  H1  Y3I 27 
Y3I H2  H2  H  0 1 N N N 51.738 16.287 35.805 0.519  4.423  1.247  H2  Y3I 28 
Y3I H3  H3  H  0 1 N N N 52.256 12.054 35.659 0.212  0.309  2.315  H3  Y3I 29 
Y3I H4  H4  H  0 1 N N N 53.916 14.291 38.913 2.205  1.423  -1.311 H4  Y3I 30 
Y3I H5  H5  H  0 1 N N N 55.520 7.146  36.599 -1.247 -4.963 -0.964 H5  Y3I 31 
Y3I H6  H6  H  0 1 N N N 56.703 12.993 32.759 -4.498 1.941  0.142  H6  Y3I 32 
Y3I H7  H7  H  0 1 N N N 55.230 13.765 32.081 -4.775 0.252  -0.351 H7  Y3I 33 
Y3I H8  H8  H  0 1 N N N 56.660 12.318 35.270 -2.989 -0.968 -1.651 H8  Y3I 34 
Y3I H9  H9  H  0 1 N N N 55.244 12.813 36.257 -1.497 -0.114 -2.112 H9  Y3I 35 
Y3I H10 H10 H  0 1 N N N 54.825 9.712  33.480 -2.139 -1.176 1.883  H10 Y3I 36 
Y3I H11 H11 H  0 1 N N N 56.427 10.500 33.682 -3.359 -1.580 0.652  H11 Y3I 37 
Y3I H12 H12 H  0 1 N N N 54.143 13.738 34.254 -2.236 1.877  -0.839 H12 Y3I 38 
Y3I H13 H13 H  0 1 N N N 53.915 11.727 32.430 -2.624 1.233  1.582  H13 Y3I 39 
Y3I H14 H14 H  0 1 N N N 55.672 15.201 35.553 -4.146 2.506  -2.292 H14 Y3I 40 
Y3I H15 H15 H  0 1 N N N 57.044 14.687 34.514 -2.887 1.656  -3.221 H15 Y3I 41 
Y3I H16 H16 H  0 1 N N N 55.684 15.624 33.808 -4.369 0.797  -2.737 H16 Y3I 42 
Y3I H17 H17 H  0 1 N N N 53.758 9.595  40.296 3.295  -3.287 -0.221 H17 Y3I 43 
Y3I H18 H18 H  0 1 N N N 55.204 10.226 31.034 -3.948 -0.060 3.139  H18 Y3I 44 
Y3I H19 H19 H  0 1 N N N 55.353 11.760 30.495 -4.877 1.143  2.464  H19 Y3I 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y3I N6  C18 SING N N 1  
Y3I C18 C17 SING N N 2  
Y3I C18 C2  SING N N 3  
Y3I C17 C16 SING N N 4  
Y3I C2  N5  SING N N 5  
Y3I C16 C19 SING N N 6  
Y3I C16 C15 SING N N 7  
Y3I N5  C15 SING N N 8  
Y3I N5  C14 SING N N 9  
Y3I C4  C3  DOUB Y N 10 
Y3I C4  C5  SING Y N 11 
Y3I N3  C14 DOUB Y N 12 
Y3I N3  C11 SING Y N 13 
Y3I C14 C13 SING Y N 14 
Y3I C3  C8  SING Y N 15 
Y3I C5  C6  DOUB Y N 16 
Y3I C11 N4  DOUB Y N 17 
Y3I C13 C9  SING Y N 18 
Y3I C13 C12 DOUB Y N 19 
Y3I C8  C9  SING N N 20 
Y3I C8  C7  DOUB Y N 21 
Y3I C6  C7  SING Y N 22 
Y3I C6  C1  SING N N 23 
Y3I C9  C10 DOUB Y N 24 
Y3I N4  C12 SING Y N 25 
Y3I C1  N1  TRIP N N 26 
Y3I C12 N2  SING Y N 27 
Y3I C10 N2  SING Y N 28 
Y3I C10 CL1 SING N N 29 
Y3I C4  H1  SING N N 30 
Y3I C5  H2  SING N N 31 
Y3I C3  H3  SING N N 32 
Y3I C7  H4  SING N N 33 
Y3I C11 H5  SING N N 34 
Y3I C17 H6  SING N N 35 
Y3I C17 H7  SING N N 36 
Y3I C15 H8  SING N N 37 
Y3I C15 H9  SING N N 38 
Y3I C2  H10 SING N N 39 
Y3I C2  H11 SING N N 40 
Y3I C16 H12 SING N N 41 
Y3I C18 H13 SING N N 42 
Y3I C19 H14 SING N N 43 
Y3I C19 H15 SING N N 44 
Y3I C19 H16 SING N N 45 
Y3I N2  H17 SING N N 46 
Y3I N6  H18 SING N N 47 
Y3I N6  H19 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y3I SMILES           ACDLabs              12.01 "N#Cc1cccc(c1)c1c2c(ncnc2[NH]c1Cl)N1CC(C)CC(N)C1"                                                                                                                   
Y3I InChI            InChI                1.06  "InChI=1S/C19H19ClN6/c1-11-5-14(22)9-26(8-11)19-16-15(13-4-2-3-12(6-13)7-21)17(20)25-18(16)23-10-24-19/h2-4,6,10-11,14H,5,8-9,22H2,1H3,(H,23,24,25)/t11-,14+/m0/s1" 
Y3I InChIKey         InChI                1.06  BSBZFPBEYMSVPJ-SMDDNHRTSA-N                                                                                                                                         
Y3I SMILES_CANONICAL CACTVS               3.385 "C[C@H]1C[C@@H](N)CN(C1)c2ncnc3[nH]c(Cl)c(c4cccc(c4)C#N)c23"                                                                                                        
Y3I SMILES           CACTVS               3.385 "C[CH]1C[CH](N)CN(C1)c2ncnc3[nH]c(Cl)c(c4cccc(c4)C#N)c23"                                                                                                           
Y3I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C[C@H](CN(C1)c2c3c(c([nH]c3ncn2)Cl)c4cccc(c4)C#N)N"                                                                                                         
Y3I SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CC(CN(C1)c2c3c(c([nH]c3ncn2)Cl)c4cccc(c4)C#N)N"                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y3I "SYSTEMATIC NAME" ACDLabs              12.01 "(3P)-3-{4-[(3R,5S)-3-amino-5-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile"                 
Y3I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[4-[(3~{R},5~{S})-3-azanyl-5-methyl-piperidin-1-yl]-6-chloranyl-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl]benzenecarbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y3I "Create component" 2023-01-03 RCSB 
Y3I "Initial release"  2023-04-05 RCSB 
# 
