data_XKI
# 
_chem_comp.id                                    XKI 
_chem_comp.name                                  "3-{2-[3-({(6M)-2,4-diamino-6-[2-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H23 F3 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-23 
_chem_comp.pdbx_modified_date                    2023-12-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        476.448 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XKI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F85 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XKI C15 C1  C 0 1 N N N N N N -7.499 -13.255 15.403 6.216  -1.969 1.681  C15 XKI 1  
XKI C8  C2  C 0 1 Y N N N N N -2.090 -13.353 18.566 3.836  1.957  -1.992 C8  XKI 2  
XKI C9  C3  C 0 1 Y N N N N N -2.624 -13.231 19.834 4.799  2.348  -2.901 C9  XKI 3  
XKI C14 C4  C 0 1 N N N N N N -6.572 -12.793 16.516 5.811  -1.234 0.430  C14 XKI 4  
XKI C13 C5  C 0 1 N N N N N N -5.232 -13.471 16.427 5.949  0.273  0.656  C13 XKI 5  
XKI C12 C6  C 0 1 Y N N N N N -4.326 -13.370 17.629 5.544  1.008  -0.596 C12 XKI 6  
XKI C11 C7  C 0 1 Y N N N N N -4.825 -13.264 18.923 6.503  1.392  -1.514 C11 XKI 7  
XKI C10 C8  C 0 1 Y N N N N N -3.983 -13.182 20.015 6.132  2.066  -2.662 C10 XKI 8  
XKI C5  C9  C 0 1 N N N N N N -0.860 -13.564 14.463 0.991  0.729  0.874  C5  XKI 9  
XKI C3  C10 C 0 1 Y N N N N N -0.653 -9.973  13.783 -2.649 0.829  1.445  C3  XKI 10 
XKI C4  C11 C 0 1 N N N N N N -1.284 -12.282 13.784 -0.463 1.070  0.539  C4  XKI 11 
XKI N2  N1  N 0 1 Y N N N N N -0.485 -8.240  12.125 -4.543 2.182  1.779  N2  XKI 12 
XKI C1  C12 C 0 1 Y N N N N N -1.111 -7.427  12.987 -5.287 1.275  1.163  C1  XKI 13 
XKI C21 C13 C 0 1 Y N N N N N -2.806 -9.960  18.507 -1.834 -3.716 -0.728 C21 XKI 14 
XKI C20 C14 C 0 1 Y N N N N N -1.489 -9.587  18.366 -2.540 -2.869 -1.564 C20 XKI 15 
XKI C19 C15 C 0 1 N N N N N N 0.477  -8.958  16.960 -3.842 -0.774 -1.982 C19 XKI 16 
XKI C18 C16 C 0 1 Y N N N N N -0.967 -9.318  17.102 -3.073 -1.695 -1.071 C18 XKI 17 
XKI C22 C17 C 0 1 Y N N N N N -3.612 -10.083 17.401 -1.663 -3.394 0.606  C22 XKI 18 
XKI C16 C18 C 0 1 Y N N N N N -1.290 -9.094  14.616 -3.468 -0.104 0.808  C16 XKI 19 
XKI C17 C19 C 0 1 Y N N N N N -1.790 -9.424  15.978 -2.898 -1.363 0.272  C17 XKI 20 
XKI C2  C20 C 0 1 Y N N N N N -0.255 -9.493  12.517 -3.237 1.999  1.938  C2  XKI 21 
XKI C23 C21 C 0 1 Y N N N N N -3.111 -9.815  16.149 -2.191 -2.223 1.110  C23 XKI 22 
XKI C6  C22 C 0 1 N N N N N N -1.066 -13.505 15.952 1.903  1.227  -0.248 C6  XKI 23 
XKI C7  C23 C 0 1 Y N N N N N -2.934 -13.414 17.472 4.206  1.285  -0.836 C7  XKI 24 
XKI F1  F1  F 0 1 N N N N N N 1.033  -8.582  18.098 -3.882 -1.318 -3.270 F1  XKI 25 
XKI F2  F2  F 0 1 N N N N N N 1.186  -10.012 16.510 -5.146 -0.623 -1.500 F2  XKI 26 
XKI F3  F3  F 0 1 N N N N N N 0.684  -7.975  16.092 -3.212 0.475  -2.023 F3  XKI 27 
XKI N1  N2  N 0 1 N N N N N N -1.354 -6.157  12.624 -6.647 1.506  1.018  N1  XKI 28 
XKI N3  N3  N 0 1 N N N N N N 0.386  -10.295 11.640 -2.466 2.955  2.585  N3  XKI 29 
XKI N4  N4  N 0 1 Y N N N N N -1.506 -7.813  14.213 -4.772 0.155  0.688  N4  XKI 30 
XKI O1  O1  O 0 1 N N N N N N -0.364 -11.251 14.180 -1.315 0.604  1.587  O1  XKI 31 
XKI O2  O2  O 0 1 N N N N N N -2.480 -13.523 16.186 3.261  0.909  0.065  O2  XKI 32 
XKI O3  O3  O 0 1 N N N N N N -7.454 -12.650 14.323 6.573  -1.350 2.656  O3  XKI 33 
XKI O4  O4  O 0 1 N N N N N N -8.233 -14.238 15.620 6.175  -3.310 1.715  O4  XKI 34 
XKI H1  H1  H 0 1 N N N N N N -1.020 -13.400 18.430 2.795  2.178  -2.180 H1  XKI 35 
XKI H2  H2  H 0 1 N N N N N N -1.967 -13.174 20.689 4.512  2.874  -3.800 H2  XKI 36 
XKI H3  H3  H 0 1 N N N N N N -6.429 -11.705 16.435 6.456  -1.538 -0.395 H3  XKI 37 
XKI H4  H4  H 0 1 N N N N N N -7.031 -13.032 17.487 4.775  -1.472 0.188  H4  XKI 38 
XKI H5  H5  H 0 1 N N N N N N -5.414 -14.539 16.239 5.304  0.577  1.480  H5  XKI 39 
XKI H6  H6  H 0 1 N N N N N N -4.696 -13.034 15.571 6.985  0.511  0.897  H6  XKI 40 
XKI H7  H7  H 0 1 N N N N N N -5.894 -13.245 19.077 7.543  1.166  -1.333 H7  XKI 41 
XKI H8  H8  H 0 1 N N N N N N -4.393 -13.080 21.009 6.884  2.372  -3.375 H8  XKI 42 
XKI H9  H9  H 0 1 N N N N N N -1.453 -14.396 14.055 1.270  1.211  1.811  H9  XKI 43 
XKI H10 H10 H 0 1 N N N N N N 0.207  -13.739 14.258 1.096  -0.351 0.976  H10 XKI 44 
XKI H11 H11 H 0 1 N N N N N N -2.304 -12.013 14.095 -0.568 2.150  0.438  H11 XKI 45 
XKI H12 H12 H 0 1 N N N N N N -1.256 -12.410 12.692 -0.743 0.588  -0.398 H12 XKI 46 
XKI H13 H13 H 0 1 N N N N N N -3.207 -10.157 19.490 -1.420 -4.633 -1.118 H13 XKI 47 
XKI H14 H14 H 0 1 N N N N N N -0.857 -9.502  19.238 -2.675 -3.126 -2.604 H14 XKI 48 
XKI H15 H15 H 0 1 N N N N N N -4.641 -10.391 17.515 -1.114 -4.062 1.255  H15 XKI 49 
XKI H16 H16 H 0 1 N N N N N N -3.754 -9.910  15.287 -2.056 -1.974 2.152  H16 XKI 50 
XKI H17 H17 H 0 1 N N N N N N -0.594 -14.374 16.432 1.623  0.745  -1.185 H17 XKI 51 
XKI H18 H18 H 0 1 N N N N N N -0.629 -12.580 16.356 1.797  2.307  -0.350 H18 XKI 52 
XKI H19 H19 H 0 1 N N N N N N -1.006 -6.002  11.700 -7.040 2.322  1.365  H19 XKI 53 
XKI H20 H20 H 0 1 N N N N N N -2.340 -5.988  12.641 -7.205 0.852  0.569  H20 XKI 54 
XKI H21 H21 H 0 1 N N N N N N 0.587  -9.783  10.805 -2.880 3.763  2.925  H21 XKI 55 
XKI H22 H22 H 0 1 N N N N N N 1.240  -10.618 12.047 -1.512 2.814  2.697  H22 XKI 56 
XKI H23 H23 H 0 1 N N N N N N -8.736 -14.437 14.839 6.444  -3.737 2.540  H23 XKI 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XKI N3  C2  SING N N 1  
XKI N2  C2  DOUB Y N 2  
XKI N2  C1  SING Y N 3  
XKI C2  C3  SING Y N 4  
XKI N1  C1  SING N N 5  
XKI C1  N4  DOUB Y N 6  
XKI C3  O1  SING N N 7  
XKI C3  C16 DOUB Y N 8  
XKI C4  O1  SING N N 9  
XKI C4  C5  SING N N 10 
XKI N4  C16 SING Y N 11 
XKI O3  C15 DOUB N N 12 
XKI C5  C6  SING N N 13 
XKI C16 C17 SING N N 14 
XKI C15 O4  SING N N 15 
XKI C15 C14 SING N N 16 
XKI C6  O2  SING N N 17 
XKI C17 C23 DOUB Y N 18 
XKI C17 C18 SING Y N 19 
XKI F3  C19 SING N N 20 
XKI C23 C22 SING Y N 21 
XKI O2  C7  SING N N 22 
XKI C13 C14 SING N N 23 
XKI C13 C12 SING N N 24 
XKI F2  C19 SING N N 25 
XKI C19 C18 SING N N 26 
XKI C19 F1  SING N N 27 
XKI C18 C20 DOUB Y N 28 
XKI C22 C21 DOUB Y N 29 
XKI C7  C12 DOUB Y N 30 
XKI C7  C8  SING Y N 31 
XKI C12 C11 SING Y N 32 
XKI C20 C21 SING Y N 33 
XKI C8  C9  DOUB Y N 34 
XKI C11 C10 DOUB Y N 35 
XKI C9  C10 SING Y N 36 
XKI C8  H1  SING N N 37 
XKI C9  H2  SING N N 38 
XKI C14 H3  SING N N 39 
XKI C14 H4  SING N N 40 
XKI C13 H5  SING N N 41 
XKI C13 H6  SING N N 42 
XKI C11 H7  SING N N 43 
XKI C10 H8  SING N N 44 
XKI C5  H9  SING N N 45 
XKI C5  H10 SING N N 46 
XKI C4  H11 SING N N 47 
XKI C4  H12 SING N N 48 
XKI C21 H13 SING N N 49 
XKI C20 H14 SING N N 50 
XKI C22 H15 SING N N 51 
XKI C23 H16 SING N N 52 
XKI C6  H17 SING N N 53 
XKI C6  H18 SING N N 54 
XKI N1  H19 SING N N 55 
XKI N1  H20 SING N N 56 
XKI N3  H21 SING N N 57 
XKI N3  H22 SING N N 58 
XKI O4  H23 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XKI SMILES           ACDLabs              12.01 "Nc1nc(c2ccccc2C(F)(F)F)c(OCCCOc2ccccc2CCC(=O)O)c(N)n1"                                                                                                                      
XKI InChI            InChI                1.06  "InChI=1S/C23H23F3N4O4/c24-23(25,26)16-8-3-2-7-15(16)19-20(21(27)30-22(28)29-19)34-13-5-12-33-17-9-4-1-6-14(17)10-11-18(31)32/h1-4,6-9H,5,10-13H2,(H,31,32)(H4,27,28,29,30)" 
XKI InChIKey         InChI                1.06  OUIRZIUAXRLDKD-UHFFFAOYSA-N                                                                                                                                                  
XKI SMILES_CANONICAL CACTVS               3.385 "Nc1nc(N)c(OCCCOc2ccccc2CCC(O)=O)c(n1)c3ccccc3C(F)(F)F"                                                                                                                      
XKI SMILES           CACTVS               3.385 "Nc1nc(N)c(OCCCOc2ccccc2CCC(O)=O)c(n1)c3ccccc3C(F)(F)F"                                                                                                                      
XKI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CCC(=O)O)OCCCOc2c(nc(nc2N)N)c3ccccc3C(F)(F)F"                                                                                                                    
XKI SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CCC(=O)O)OCCCOc2c(nc(nc2N)N)c3ccccc3C(F)(F)F"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XKI "SYSTEMATIC NAME" ACDLabs              12.01 "3-{2-[3-({(6M)-2,4-diamino-6-[2-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid" 
XKI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-[3-[2,4-bis(azanyl)-6-[2-(trifluoromethyl)phenyl]pyrimidin-5-yl]oxypropoxy]phenyl]propanoic acid"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XKI "Create component" 2022-11-23 RCSB 
XKI "Initial release"  2023-12-13 RCSB 
# 
