data_X7I
# 
_chem_comp.id                                    X7I 
_chem_comp.name                                  "[(2~{R},3~{S},4~{R},5~{R})-5-imidazo[2,1-f]purin-3-yl-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[2-(1~{H}-indol-3-yl)ethyl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H23 N7 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-05 
_chem_comp.pdbx_modified_date                    2023-06-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        477.473 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X7I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P8P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X7I C4    C1  C 0 1 Y N N 8.283  5.487  0.400  -5.068 -0.384 -0.255 C4    X7I 1  
X7I C6    C2  C 0 1 Y N N 8.453  4.814  -1.900 -6.481 -2.370 -0.014 C6    X7I 2  
X7I C13   C3  C 0 1 N N N 4.400  8.173  8.308  5.533  0.209  -1.431 C13   X7I 3  
X7I C16   C4  C 0 1 Y N N 0.904  8.553  9.656  8.791  -0.950 0.045  C16   X7I 4  
X7I C2    C5  C 0 1 Y N N 10.359 5.441  -0.510 -7.329 -0.280 -0.737 C2    X7I 5  
X7I C5    C6  C 0 1 Y N N 7.635  5.082  -0.784 -5.166 -1.737 0.081  C5    X7I 6  
X7I C11   C7  C 0 1 N N N 4.619  4.961  7.613  2.388  1.548  0.033  C11   X7I 7  
X7I C12   C8  C 0 1 N N N 5.127  7.025  8.914  4.685  0.807  -0.307 C12   X7I 8  
X7I C14   C9  C 0 1 Y N N 2.934  8.217  8.621  6.938  -0.016 -0.934 C14   X7I 9  
X7I C15   C10 C 0 1 Y N N 1.924  7.759  7.835  7.981  0.817  -1.082 C15   X7I 10 
X7I C17   C11 C 0 1 Y N N -0.020 8.968  10.616 9.535  -1.904 0.732  C17   X7I 11 
X7I N12   N1  N 0 1 N N N 4.443  5.755  8.677  3.319  1.026  -0.790 N12   X7I 12 
X7I "O5'" O1  O 0 1 N N N 5.579  5.466  6.810  1.133  1.749  -0.411 "O5'" X7I 13 
X7I "C5'" C12 C 0 1 N N N 5.746  4.823  5.518  0.184  2.315  0.531  "C5'" X7I 14 
X7I "C4'" C13 C 0 1 N N R 6.838  5.559  4.807  -1.178 2.469  -0.149 "C4'" X7I 15 
X7I "O4'" O2  O 0 1 N N N 6.984  4.990  3.487  -1.725 1.174  -0.447 "O4'" X7I 16 
X7I "C3'" C14 C 0 1 N N S 6.595  7.084  4.624  -2.162 3.177  0.803  "C3'" X7I 17 
X7I "O3'" O3  O 0 1 N N N 7.592  7.855  5.301  -2.630 4.396  0.223  "O3'" X7I 18 
X7I "C2'" C15 C 0 1 N N R 6.584  7.268  3.106  -3.327 2.170  0.962  "C2'" X7I 19 
X7I "O2'" O4  O 0 1 N N N 7.080  8.493  2.598  -4.588 2.843  0.945  "O2'" X7I 20 
X7I "C1'" C16 C 0 1 N N R 7.451  6.079  2.696  -3.157 1.276  -0.298 "C1'" X7I 21 
X7I N9    N2  N 0 1 Y N N 7.277  5.662  1.317  -3.750 -0.045 -0.076 N9    X7I 22 
X7I C8    C17 C 0 1 Y N N 6.088  5.352  0.686  -3.095 -1.161 0.344  C8    X7I 23 
X7I N7    N3  N 0 1 Y N N 6.264  5.023  -0.578 -3.933 -2.156 0.437  N7    X7I 24 
X7I N6    N4  N 0 1 Y N N 8.194  4.419  -3.163 -6.933 -3.584 0.222  N6    X7I 25 
X7I N1    N5  N 0 1 Y N N 9.822  4.998  -1.699 -7.535 -1.590 -0.428 N1    X7I 26 
X7I N3    N6  N 0 1 Y N N 9.628  5.678  0.549  -6.161 0.284  -0.648 N3    X7I 27 
X7I C9    C18 C 0 1 Y N N 9.435  4.379  -3.759 -8.248 -3.620 -0.026 C9    X7I 28 
X7I C10   C19 C 0 1 Y N N 10.443 4.687  -2.901 -8.643 -2.397 -0.435 C10   X7I 29 
X7I O11   O5  O 0 1 N N N 3.976  3.938  7.392  2.682  1.838  1.176  O11   X7I 30 
X7I N15   N7  N 0 1 Y N N 0.711  7.936  8.450  9.095  0.277  -0.501 N15   X7I 31 
X7I C21   C20 C 0 1 Y N N 2.300  8.740  9.815  7.427  -1.188 -0.205 C21   X7I 32 
X7I C20   C21 C 0 1 Y N N 2.760  9.344  11.000 6.835  -2.373 0.236  C20   X7I 33 
X7I C19   C22 C 0 1 Y N N 1.846  9.748  11.954 7.584  -3.296 0.910  C19   X7I 34 
X7I C18   C23 C 0 1 Y N N 0.473  9.567  11.755 8.931  -3.066 1.158  C18   X7I 35 
X7I H1    H1  H 0 1 N N N 4.516  8.115  7.216  5.103  -0.741 -1.745 H1    X7I 36 
X7I H2    H2  H 0 1 N N N 4.858  9.103  8.677  5.553  0.897  -2.276 H2    X7I 37 
X7I H3    H3  H 0 1 N N N 11.426 5.599  -0.450 -8.170 0.316  -1.061 H3    X7I 38 
X7I H4    H4  H 0 1 N N N 6.135  6.972  8.476  4.665  0.119  0.539  H4    X7I 39 
X7I H5    H5  H 0 1 N N N 5.206  7.188  9.999  5.115  1.758  0.008  H5    X7I 40 
X7I H6    H6  H 0 1 N N N 2.058  7.316  6.859  7.944  1.773  -1.583 H6    X7I 41 
X7I H7    H7  H 0 1 N N N -1.081 8.825  10.472 10.583 -1.733 0.930  H7    X7I 42 
X7I H8    H8  H 0 1 N N N 3.787  5.453  9.369  3.084  0.794  -1.702 H8    X7I 43 
X7I H9    H9  H 0 1 N N N 4.811  4.883  4.941  0.087  1.654  1.392  H9    X7I 44 
X7I H10   H10 H 0 1 N N N 6.026  3.768  5.653  0.538  3.292  0.861  H10   X7I 45 
X7I H11   H11 H 0 1 N N N 7.775  5.429  5.368  -1.071 3.047  -1.067 H11   X7I 46 
X7I H12   H12 H 0 1 N N N 5.597  7.327  5.017  -1.689 3.371  1.766  H12   X7I 47 
X7I H13   H13 H 0 1 N N N 7.540  7.691  6.235  -3.252 4.883  0.780  H13   X7I 48 
X7I H14   H14 H 0 1 N N N 5.561  7.096  2.741  -3.213 1.584  1.873  H14   X7I 49 
X7I H15   H15 H 0 1 N N N 6.514  9.204  2.875  -4.703 3.480  1.663  H15   X7I 50 
X7I H16   H16 H 0 1 N N N 8.508  6.300  2.907  -3.600 1.755  -1.171 H16   X7I 51 
X7I H17   H17 H 0 1 N N N 5.124  5.376  1.173  -2.040 -1.215 0.571  H17   X7I 52 
X7I H18   H18 H 0 1 N N N 9.591  4.129  -4.798 -8.885 -4.485 0.080  H18   X7I 53 
X7I H19   H19 H 0 1 N N N 11.503 4.689  -3.110 -9.646 -2.106 -0.711 H19   X7I 54 
X7I H20   H20 H 0 1 N N N -0.174 7.658  8.076  9.970  0.696  -0.477 H20   X7I 55 
X7I H21   H21 H 0 1 N N N 3.818  9.490  11.162 5.788  -2.559 0.047  H21   X7I 56 
X7I H22   H22 H 0 1 N N N 2.196  10.210 12.865 7.126  -4.213 1.251  H22   X7I 57 
X7I H23   H23 H 0 1 N N N -0.218 9.905  12.513 9.510  -3.805 1.691  H23   X7I 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X7I C9    N6    SING Y N 1  
X7I C9    C10   DOUB Y N 2  
X7I N6    C6    DOUB Y N 3  
X7I C10   N1    SING Y N 4  
X7I C6    N1    SING Y N 5  
X7I C6    C5    SING Y N 6  
X7I N1    C2    SING Y N 7  
X7I C5    N7    SING Y N 8  
X7I C5    C4    DOUB Y N 9  
X7I N7    C8    DOUB Y N 10 
X7I C2    N3    DOUB Y N 11 
X7I C4    N3    SING Y N 12 
X7I C4    N9    SING Y N 13 
X7I C8    N9    SING Y N 14 
X7I N9    "C1'" SING N N 15 
X7I "O2'" "C2'" SING N N 16 
X7I "C1'" "C2'" SING N N 17 
X7I "C1'" "O4'" SING N N 18 
X7I "C2'" "C3'" SING N N 19 
X7I "O4'" "C4'" SING N N 20 
X7I "C3'" "C4'" SING N N 21 
X7I "C3'" "O3'" SING N N 22 
X7I "C4'" "C5'" SING N N 23 
X7I "C5'" "O5'" SING N N 24 
X7I "O5'" C11   SING N N 25 
X7I O11   C11   DOUB N N 26 
X7I C11   N12   SING N N 27 
X7I C15   N15   SING Y N 28 
X7I C15   C14   DOUB Y N 29 
X7I C13   C14   SING N N 30 
X7I C13   C12   SING N N 31 
X7I N15   C16   SING Y N 32 
X7I C14   C21   SING Y N 33 
X7I N12   C12   SING N N 34 
X7I C16   C21   DOUB Y N 35 
X7I C16   C17   SING Y N 36 
X7I C21   C20   SING Y N 37 
X7I C17   C18   DOUB Y N 38 
X7I C20   C19   DOUB Y N 39 
X7I C18   C19   SING Y N 40 
X7I C13   H1    SING N N 41 
X7I C13   H2    SING N N 42 
X7I C2    H3    SING N N 43 
X7I C12   H4    SING N N 44 
X7I C12   H5    SING N N 45 
X7I C15   H6    SING N N 46 
X7I C17   H7    SING N N 47 
X7I N12   H8    SING N N 48 
X7I "C5'" H9    SING N N 49 
X7I "C5'" H10   SING N N 50 
X7I "C4'" H11   SING N N 51 
X7I "C3'" H12   SING N N 52 
X7I "O3'" H13   SING N N 53 
X7I "C2'" H14   SING N N 54 
X7I "O2'" H15   SING N N 55 
X7I "C1'" H16   SING N N 56 
X7I C8    H17   SING N N 57 
X7I C9    H18   SING N N 58 
X7I C10   H19   SING N N 59 
X7I N15   H20   SING N N 60 
X7I C20   H21   SING N N 61 
X7I C19   H22   SING N N 62 
X7I C18   H23   SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X7I InChI            InChI                1.06  "InChI=1S/C23H23N7O5/c31-18-16(10-34-23(33)25-6-5-13-9-26-15-4-2-1-3-14(13)15)35-22(19(18)32)30-12-27-17-20-24-7-8-29(20)11-28-21(17)30/h1-4,7-9,11-12,16,18-19,22,26,31-32H,5-6,10H2,(H,25,33)/t16-,18-,19-,22-/m1/s1" 
X7I InChIKey         InChI                1.06  PDQVMZAZVYVBOK-WGQQHEPDSA-N                                                                                                                                                                                             
X7I SMILES_CANONICAL CACTVS               3.385 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COC(=O)NCCc2c[nH]c3ccccc23)n4cnc5c6nccn6cnc45"                                                                                                                                          
X7I SMILES           CACTVS               3.385 "O[CH]1[CH](O)[CH](O[CH]1COC(=O)NCCc2c[nH]c3ccccc23)n4cnc5c6nccn6cnc45"                                                                                                                                                 
X7I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)CCNC(=O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncn6c5ncc6)O)O"                                                                                                                                     
X7I SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)CCNC(=O)OCC3C(C(C(O3)n4cnc5c4ncn6c5ncc6)O)O"                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           X7I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{S},4~{R},5~{R})-5-imidazo[2,1-f]purin-3-yl-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[2-(1~{H}-indol-3-yl)ethyl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X7I "Create component" 2023-06-05 PDBE 
X7I "Initial release"  2023-06-14 RCSB 
# 
