data_X5I
# 
_chem_comp.id                                    X5I 
_chem_comp.name                                  "(6M)-4-{[(2R)-azepan-2-yl]methyl}-6-[(4R)-imidazo[1,2-a]pyridin-3-yl]-2H-pyrido[3,2-b][1,4]oxazin-3(4H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H23 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-23 
_chem_comp.pdbx_modified_date                    2024-11-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        377.440 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X5I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UOJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X5I C10 C1  C 0 1 Y N N N N N -16.203 -31.271 -18.457 -0.595 1.487  0.373  C10 X5I 1  
X5I C12 C2  C 0 1 N N N N N N -16.107 -32.247 -20.750 -2.335 0.060  1.427  C12 X5I 2  
X5I C13 C3  C 0 1 N N R N N N -15.015 -31.418 -21.473 -2.626 -1.083 0.452  C13 X5I 3  
X5I C14 C4  C 0 1 N N N N N N -14.132 -32.315 -22.360 -3.095 -2.239 1.209  C14 X5I 4  
X5I C15 C5  C 0 1 N N N N N N -13.465 -31.661 -23.585 -3.356 -3.453 0.289  C15 X5I 5  
X5I C16 C6  C 0 1 N N N N N N -14.429 -31.576 -24.791 -4.663 -3.247 -0.427 C16 X5I 6  
X5I N19 N1  N 0 1 N N N N N N -15.606 -30.282 -22.197 -3.608 -0.617 -0.550 N19 X5I 7  
X5I C02 C7  C 0 1 N N N N N N -18.124 -31.178 -19.910 -2.869 2.144  0.267  C02 X5I 8  
X5I C03 C8  C 0 1 N N N N N N -18.879 -30.525 -18.761 -2.450 3.351  -0.537 C03 X5I 9  
X5I C05 C9  C 0 1 Y N N N N N -16.832 -30.446 -17.528 -0.205 2.762  -0.039 C05 X5I 10 
X5I C06 C10 C 0 1 Y N N N N N -16.225 -30.243 -16.320 1.128  3.008  -0.335 C06 X5I 11 
X5I C07 C11 C 0 1 Y N N N N N -15.013 -30.863 -16.053 2.034  1.967  -0.211 C07 X5I 12 
X5I C08 C12 C 0 1 Y N N N N N -14.449 -31.684 -17.011 1.580  0.715  0.205  C08 X5I 13 
X5I C17 C13 C 0 1 N N N N N N -15.500 -30.470 -24.699 -4.498 -2.558 -1.798 C17 X5I 14 
X5I C18 C14 C 0 1 N N N N N N -16.367 -30.551 -23.430 -3.480 -1.405 -1.751 C18 X5I 15 
X5I C20 C15 C 0 1 Y N N N N N -13.147 -32.318 -16.830 2.537  -0.400 0.340  C20 X5I 16 
X5I C21 C16 C 0 1 Y N N N N N -12.323 -32.199 -15.748 2.282  -1.633 0.872  C21 X5I 17 
X5I C23 C17 C 0 1 Y N N N N N -11.210 -33.387 -17.142 4.366  -1.633 0.264  C23 X5I 18 
X5I C24 C18 C 0 1 Y N N N N N -10.264 -34.165 -17.848 5.714  -1.922 -0.022 C24 X5I 19 
X5I C25 C19 C 0 1 Y N N N N N -10.562 -34.579 -19.096 6.492  -0.969 -0.603 C25 X5I 20 
X5I C26 C20 C 0 1 Y N N N N N -11.818 -34.245 -19.695 5.943  0.286  -0.909 C26 X5I 21 
X5I C27 C21 C 0 1 Y N N N N N -12.719 -33.511 -19.027 4.646  0.546  -0.635 C27 X5I 22 
X5I N09 N2  N 0 1 Y N N N N N -15.055 -31.848 -18.199 0.293  0.514  0.481  N09 X5I 23 
X5I N11 N3  N 0 1 N N N N N N -16.811 -31.486 -19.695 -1.940 1.254  0.675  N11 X5I 24 
X5I N22 N4  N 0 1 Y N N N N N -11.146 -32.861 -15.935 3.397  -2.355 0.815  N22 X5I 25 
X5I N28 N5  N 0 1 Y N N N N N -12.428 -33.083 -17.749 3.857  -0.400 -0.052 N28 X5I 26 
X5I O01 O1  O 0 1 N N N N N N -18.685 -31.389 -20.967 -4.037 1.973  0.545  O01 X5I 27 
X5I O04 O2  O 0 1 N N N N N N -18.026 -29.834 -17.831 -1.133 3.749  -0.147 O04 X5I 28 
X5I H1  H1  H 0 1 N N N N N N -16.846 -32.578 -21.495 -3.231 0.277  2.009  H1  X5I 29 
X5I H2  H2  H 0 1 N N N N N N -15.632 -33.126 -20.290 -1.527 -0.231 2.098  H2  X5I 30 
X5I H3  H3  H 0 1 N N N N N N -14.362 -31.007 -20.689 -1.701 -1.350 -0.060 H3  X5I 31 
X5I H4  H4  H 0 1 N N N N N N -14.762 -33.139 -22.727 -2.342 -2.508 1.949  H4  X5I 32 
X5I H5  H5  H 0 1 N N N N N N -13.331 -32.721 -21.725 -4.020 -1.976 1.722  H5  X5I 33 
X5I H6  H6  H 0 1 N N N N N N -12.587 -32.258 -23.873 -2.550 -3.539 -0.439 H6  X5I 34 
X5I H7  H7  H 0 1 N N N N N N -13.144 -30.644 -23.314 -3.405 -4.361 0.890  H7  X5I 35 
X5I H8  H8  H 0 1 N N N N N N -14.945 -32.543 -24.883 -5.137 -4.217 -0.577 H8  X5I 36 
X5I H9  H9  H 0 1 N N N N N N -13.829 -31.394 -25.694 -5.313 -2.635 0.198  H9  X5I 37 
X5I H10 H10 H 0 1 N N N N N N -14.857 -29.666 -22.441 -3.485 0.365  -0.747 H10 X5I 38 
X5I H12 H12 H 0 1 N N N N N N -19.594 -29.802 -19.181 -2.458 3.101  -1.598 H12 X5I 39 
X5I H13 H13 H 0 1 N N N N N N -19.427 -31.307 -18.215 -3.146 4.169  -0.352 H13 X5I 40 
X5I H14 H14 H 0 1 N N N N N N -16.685 -29.605 -15.580 1.452  3.987  -0.655 H14 X5I 41 
X5I H15 H15 H 0 1 N N N N N N -14.516 -30.706 -15.107 3.079  2.123  -0.434 H15 X5I 42 
X5I H16 H16 H 0 1 N N N N N N -14.993 -29.494 -24.711 -4.166 -3.296 -2.527 H16 X5I 43 
X5I H17 H17 H 0 1 N N N N N N -16.159 -30.552 -25.576 -5.464 -2.162 -2.113 H17 X5I 44 
X5I H18 H18 H 0 1 N N N N N N -17.177 -29.811 -23.511 -3.634 -0.761 -2.617 H18 X5I 45 
X5I H19 H19 H 0 1 N N N N N N -16.798 -31.561 -23.363 -2.473 -1.820 -1.796 H19 X5I 46 
X5I H20 H20 H 0 1 N N N N N N -12.573 -31.648 -14.853 1.335  -1.964 1.271  H20 X5I 47 
X5I H21 H21 H 0 1 N N N N N N -9.318  -34.423 -17.395 6.126  -2.891 0.218  H21 X5I 48 
X5I H22 H22 H 0 1 N N N N N N -9.846  -35.168 -19.649 7.528  -1.177 -0.828 H22 X5I 49 
X5I H23 H23 H 0 1 N N N N N N -12.042 -34.587 -20.694 6.558  1.045  -1.370 H23 X5I 50 
X5I H24 H24 H 0 1 N N N N N N -13.663 -33.257 -19.485 4.232  1.515  -0.874 H24 X5I 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X5I C16 C17 SING N N 1  
X5I C16 C15 SING N N 2  
X5I C17 C18 SING N N 3  
X5I C15 C14 SING N N 4  
X5I C18 N19 SING N N 5  
X5I C14 C13 SING N N 6  
X5I N19 C13 SING N N 7  
X5I C13 C12 SING N N 8  
X5I O01 C02 DOUB N N 9  
X5I C12 N11 SING N N 10 
X5I C02 N11 SING N N 11 
X5I C02 C03 SING N N 12 
X5I N11 C10 SING N N 13 
X5I C26 C25 SING Y N 14 
X5I C26 C27 DOUB Y N 15 
X5I C25 C24 DOUB Y N 16 
X5I C27 N28 SING Y N 17 
X5I C03 O04 SING N N 18 
X5I C10 N09 DOUB Y N 19 
X5I C10 C05 SING Y N 20 
X5I N09 C08 SING Y N 21 
X5I C24 C23 SING Y N 22 
X5I O04 C05 SING N N 23 
X5I N28 C23 SING Y N 24 
X5I N28 C20 SING Y N 25 
X5I C05 C06 DOUB Y N 26 
X5I C23 N22 DOUB Y N 27 
X5I C08 C20 SING N N 28 
X5I C08 C07 DOUB Y N 29 
X5I C20 C21 DOUB Y N 30 
X5I C06 C07 SING Y N 31 
X5I N22 C21 SING Y N 32 
X5I C12 H1  SING N N 33 
X5I C12 H2  SING N N 34 
X5I C13 H3  SING N N 35 
X5I C14 H4  SING N N 36 
X5I C14 H5  SING N N 37 
X5I C15 H6  SING N N 38 
X5I C15 H7  SING N N 39 
X5I C16 H8  SING N N 40 
X5I C16 H9  SING N N 41 
X5I N19 H10 SING N N 42 
X5I C03 H12 SING N N 43 
X5I C03 H13 SING N N 44 
X5I C06 H14 SING N N 45 
X5I C07 H15 SING N N 46 
X5I C17 H16 SING N N 47 
X5I C17 H17 SING N N 48 
X5I C18 H18 SING N N 49 
X5I C18 H19 SING N N 50 
X5I C21 H20 SING N N 51 
X5I C24 H21 SING N N 52 
X5I C25 H22 SING N N 53 
X5I C26 H23 SING N N 54 
X5I C27 H24 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X5I SMILES           ACDLabs              12.01 "O=C1COc2ccc(nc2N1CC1CCCCCN1)c1cnc2ccccn21"                                                                                                                          
X5I InChI            InChI                1.06  "InChI=1S/C21H23N5O2/c27-20-14-28-18-9-8-16(17-12-23-19-7-3-5-11-25(17)19)24-21(18)26(20)13-15-6-2-1-4-10-22-15/h3,5,7-9,11-12,15,22H,1-2,4,6,10,13-14H2/t15-/m1/s1" 
X5I InChIKey         InChI                1.06  YYCHTNBYNGXUNO-OAHLLOKOSA-N                                                                                                                                          
X5I SMILES_CANONICAL CACTVS               3.385 "O=C1COc2ccc(nc2N1C[C@H]3CCCCCN3)c4cnc5ccccn45"                                                                                                                      
X5I SMILES           CACTVS               3.385 "O=C1COc2ccc(nc2N1C[CH]3CCCCCN3)c4cnc5ccccn45"                                                                                                                       
X5I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccn2c(c1)ncc2c3ccc4c(n3)N(C(=O)CO4)C[C@H]5CCCCCN5"                                                                                                                
X5I SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccn2c(c1)ncc2c3ccc4c(n3)N(C(=O)CO4)CC5CCCCCN5"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X5I "SYSTEMATIC NAME" ACDLabs              12.01 "(6M)-4-{[(2R)-azepan-2-yl]methyl}-6-[(4R)-imidazo[1,2-a]pyridin-3-yl]-2H-pyrido[3,2-b][1,4]oxazin-3(4H)-one" 
X5I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[(2~{R})-azepan-2-yl]methyl]-6-imidazo[1,2-a]pyridin-3-yl-pyrido[3,2-b][1,4]oxazin-3-one"                 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X5I "Create component" 2023-10-23 RCSB 
X5I "Initial release"  2024-11-06 RCSB 
# 
