data_VXI
# 
_chem_comp.id                                    VXI 
_chem_comp.name                                  "3-[[(3~{S})-1-[2-(3,4-dimethoxyphenyl)ethyl]piperidin-3-yl]methyl]-7,8-dimethoxy-2,5-dihydro-1~{H}-3-benzazepin-4-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H38 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Cilobradine 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-02 
_chem_comp.pdbx_modified_date                    2024-04-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        482.612 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VXI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8IO3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VXI CAH C1  C 0 1 N N S N N N 128.189 89.122 94.601  -0.143 -0.391 0.304  CAH VXI 1  
VXI CAI C2  C 0 1 N N N N N N 127.334 89.869 93.710  -0.333 -1.794 0.887  CAI VXI 2  
VXI CAJ C3  C 0 1 N N N N N N 129.009 88.102 93.764  1.223  -0.309 -0.381 CAJ VXI 3  
VXI CAK C4  C 0 1 N N N N N N 126.420 89.042 92.960  0.807  -2.090 1.865  CAK VXI 4  
VXI CAL C5  C 0 1 N N N N N N 129.131 89.980 95.619  -1.245 -0.109 -0.720 CAL VXI 5  
VXI CAM C6  C 0 1 N N N N N N 127.207 87.996 92.153  2.146  -1.959 1.135  CAM VXI 6  
VXI CAN C7  C 0 1 N N N N N N 128.763 86.479 92.321  3.611  -0.395 0.009  CAN VXI 7  
VXI CAO C8  C 0 1 N N N N N N 130.060 91.837 95.044  -2.921 1.242  0.434  CAO VXI 8  
VXI CAP C9  C 0 1 N N N N N N 127.930 85.259 91.911  4.670  -0.462 1.110  CAP VXI 9  
VXI CAQ C10 C 0 1 N N N N N N 128.179 92.073 96.136  -3.141 -1.237 0.017  CAQ VXI 10 
VXI CAR C11 C 0 1 N N N N N N 131.146 92.169 95.988  -4.095 1.201  1.393  CAR VXI 11 
VXI CAS C12 C 0 1 N N N N N N 127.997 93.275 96.163  -4.425 -1.581 0.691  CAS VXI 12 
VXI CAT C13 C 0 1 Y N N N N N 130.685 93.561 97.108  -5.340 0.716  0.714  CAT VXI 13 
VXI CAU C14 C 0 1 Y N N N N N 128.964 94.041 97.097  -5.508 -0.586 0.345  CAU VXI 14 
VXI CAV C15 C 0 1 Y N N N N N 128.415 84.695 90.578  6.036  -0.252 0.508  CAV VXI 15 
VXI CAW C16 C 0 1 Y N N N N N 131.528 94.191 97.885  -6.350 1.636  0.447  CAW VXI 16 
VXI CAX C17 C 0 1 Y N N N N N 128.532 95.016 97.853  -6.642 -1.008 -0.324 CAX VXI 17 
VXI CAY C18 C 0 1 Y N N N N N 129.531 83.878 90.560  6.555  1.025  0.405  CAY VXI 18 
VXI CAZ C19 C 0 1 Y N N N N N 131.031 95.313 98.760  -7.498 1.231  -0.210 CAZ VXI 19 
VXI CBA C20 C 0 1 Y N N N N N 127.750 85.002 89.402  6.768  -1.337 0.064  CBA VXI 20 
VXI CBB C21 C 0 1 Y N N N N N 129.485 95.733 98.740  -7.647 -0.094 -0.607 CBB VXI 21 
VXI CBC C22 C 0 1 Y N N N N N 129.994 83.361 89.357  7.811  1.220  -0.148 CBC VXI 22 
VXI CBD C23 C 0 1 Y N N N N N 128.205 84.485 88.198  8.021  -1.150 -0.489 CBD VXI 23 
VXI CBE C24 C 0 1 Y N N N N N 129.325 83.665 88.180  8.545  0.128  -0.600 CBE VXI 24 
VXI CBF C25 C 0 1 N N N N N N 132.302 97.254 99.134  -8.268 3.474  -0.032 CBF VXI 25 
VXI CBG C26 C 0 1 N N N N N N 127.649 96.856 99.759  -8.847 -1.867 -1.643 CBG VXI 26 
VXI CBH C27 C 0 1 N N N N N N 132.034 82.641 90.371  7.512  3.548  0.233  CBH VXI 27 
VXI CBI C28 C 0 1 N N N N N N 128.862 82.313 86.315  10.475 -0.852 -1.586 CBI VXI 28 
VXI NAF N1  N 0 1 N N N N N N 128.122 87.265 92.990  2.280  -0.600 0.596  NAF VXI 29 
VXI NAG N2  N 0 1 N N N N N N 129.134 91.459 95.560  -2.543 -0.075 -0.042 NAG VXI 30 
VXI OAA O1  O 0 1 N N N N N N 127.305 91.460 96.649  -2.578 -2.151 -0.548 OAA VXI 31 
VXI OAB O2  O 0 1 N N N N N N 131.915 95.997 99.604  -8.485 2.131  -0.468 OAB VXI 32 
VXI OAC O3  O 0 1 N N N N N N 129.035 96.780 99.558  -8.767 -0.491 -1.267 OAC VXI 33 
VXI OAD O4  O 0 1 N N N N N N 131.121 82.527 89.312  8.323  2.476  -0.250 OAD VXI 34 
VXI OAE O5  O 0 1 N N N N N N 129.785 83.144 86.963  9.778  0.314  -1.143 OAE VXI 35 
VXI H1  H1  H 0 1 N N N N N N 127.535 88.522 95.251  -0.193 0.346  1.105  H1  VXI 36 
VXI H2  H2  H 0 1 N N N N N N 126.748 90.583 94.307  -1.286 -1.844 1.413  H2  VXI 37 
VXI H3  H3  H 0 1 N N N N N N 127.968 90.420 93.000  -0.322 -2.528 0.081  H3  VXI 38 
VXI H4  H4  H 0 1 N N N N N N 129.681 88.646 93.084  1.268  -1.036 -1.191 H4  VXI 39 
VXI H5  H5  H 0 1 N N N N N N 129.605 87.472 94.441  1.367  0.693  -0.785 H5  VXI 40 
VXI H6  H6  H 0 1 N N N N N N 125.737 88.530 93.654  0.772  -1.380 2.691  H6  VXI 41 
VXI H7  H7  H 0 1 N N N N N N 125.838 89.672 92.271  0.701  -3.104 2.251  H7  VXI 42 
VXI H8  H8  H 0 1 N N N N N N 128.828 89.704 96.640  -1.059 0.852  -1.199 H8  VXI 43 
VXI H9  H9  H 0 1 N N N N N N 130.167 89.654 95.443  -1.250 -0.896 -1.474 H9  VXI 44 
VXI H10 H10 H 0 1 N N N N N N 126.498 87.290 91.696  2.961  -2.155 1.832  H10 VXI 45 
VXI H11 H11 H 0 1 N N N N N N 127.776 88.508 91.363  2.186  -2.679 0.317  H11 VXI 46 
VXI H12 H12 H 0 1 N N N N N N 129.628 86.137 92.908  3.649  0.582  -0.473 H12 VXI 47 
VXI H13 H13 H 0 1 N N N N N N 129.115 86.990 91.413  3.805  -1.172 -0.730 H13 VXI 48 
VXI H14 H14 H 0 1 N N N N N N 129.801 92.742 94.475  -3.187 1.863  -0.421 H14 VXI 49 
VXI H15 H15 H 0 1 N N N N N N 130.420 91.060 94.354  -2.068 1.691  0.942  H15 VXI 50 
VXI H16 H16 H 0 1 N N N N N N 128.021 84.483 92.685  4.476  0.315  1.849  H16 VXI 51 
VXI H17 H17 H 0 1 N N N N N N 126.876 85.558 91.814  4.632  -1.439 1.592  H17 VXI 52 
VXI H18 H18 H 0 1 N N N N N N 131.370 91.282 96.598  -3.857 0.532  2.220  H18 VXI 53 
VXI H19 H19 H 0 1 N N N N N N 132.040 92.455 95.415  -4.271 2.203  1.785  H19 VXI 54 
VXI H21 H21 H 0 1 N N N N N N 128.121 93.666 95.142  -4.740 -2.575 0.374  H21 VXI 55 
VXI H22 H22 H 0 1 N N N N N N 126.968 93.461 96.504  -4.273 -1.582 1.770  H22 VXI 56 
VXI H26 H26 H 0 1 N N N N N N 132.571 93.910 97.899  -6.237 2.666  0.752  H26 VXI 57 
VXI H27 H27 H 0 1 N N N N N N 127.490 95.299 97.833  -6.744 -2.040 -0.625 H27 VXI 58 
VXI H28 H28 H 0 1 N N N N N N 130.042 83.642 91.482  5.983  1.871  0.756  H28 VXI 59 
VXI H29 H29 H 0 1 N N N N N N 126.880 85.642 89.423  6.360  -2.334 0.150  H29 VXI 60 
VXI H30 H30 H 0 1 N N N N N N 127.690 84.719 87.278  8.592  -1.999 -0.834 H30 VXI 61 
VXI H31 H31 H 0 1 N N N N N N 132.992 97.719 99.854  -7.375 3.873  -0.515 H31 VXI 62 
VXI H32 H32 H 0 1 N N N N N N 132.806 97.143 98.162  -9.129 4.087  -0.300 H32 VXI 63 
VXI H33 H33 H 0 1 N N N N N N 131.413 97.891 99.015  -8.134 3.489  1.049  H33 VXI 64 
VXI H34 H34 H 0 1 N N N N N N 127.419 97.711 100.412 -8.015 -2.112 -2.304 H34 VXI 65 
VXI H35 H35 H 0 1 N N N N N N 127.145 96.989 98.790  -8.797 -2.491 -0.750 H35 VXI 66 
VXI H36 H36 H 0 1 N N N N N N 127.296 95.928 100.232 -9.788 -2.049 -2.161 H36 VXI 67 
VXI H37 H37 H 0 1 N N N N N N 132.866 81.938 90.216  8.038  4.493  0.093  H37 VXI 68 
VXI H38 H38 H 0 1 N N N N N N 132.425 83.668 90.409  6.572  3.570  -0.317 H38 VXI 69 
VXI H39 H39 H 0 1 N N N N N N 131.527 82.406 91.319  7.308  3.400  1.294  H39 VXI 70 
VXI H40 H40 H 0 1 N N N N N N 129.296 81.947 85.373  10.626 -1.527 -0.743 H40 VXI 71 
VXI H41 H41 H 0 1 N N N N N N 128.620 81.458 86.964  9.889  -1.357 -2.354 H41 VXI 72 
VXI H42 H42 H 0 1 N N N N N N 127.945 82.881 86.100  11.442 -0.564 -1.997 H42 VXI 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VXI CAH CAI SING N N 1  
VXI CAH CAJ SING N N 2  
VXI CAH CAL SING N N 3  
VXI CAI CAK SING N N 4  
VXI CAJ NAF SING N N 5  
VXI CAK CAM SING N N 6  
VXI CAL NAG SING N N 7  
VXI CAM NAF SING N N 8  
VXI CAN CAP SING N N 9  
VXI CAN NAF SING N N 10 
VXI CAO CAR SING N N 11 
VXI CAO NAG SING N N 12 
VXI CAP CAV SING N N 13 
VXI CAQ CAS SING N N 14 
VXI CAQ NAG SING N N 15 
VXI CAQ OAA DOUB N N 16 
VXI CAS CAU SING N N 17 
VXI CAT CAW DOUB Y N 18 
VXI CAU CAX DOUB Y N 19 
VXI CAV CAY DOUB Y N 20 
VXI CAV CBA SING Y N 21 
VXI CAW CAZ SING Y N 22 
VXI CAX CBB SING Y N 23 
VXI CAY CBC SING Y N 24 
VXI CAZ CBB DOUB Y N 25 
VXI CAZ OAB SING N N 26 
VXI CBA CBD DOUB Y N 27 
VXI CBB OAC SING N N 28 
VXI CBC CBE DOUB Y N 29 
VXI CBC OAD SING N N 30 
VXI CBD CBE SING Y N 31 
VXI CBE OAE SING N N 32 
VXI CBF OAB SING N N 33 
VXI CBG OAC SING N N 34 
VXI CBH OAD SING N N 35 
VXI CBI OAE SING N N 36 
VXI CAH H1  SING N N 37 
VXI CAI H2  SING N N 38 
VXI CAI H3  SING N N 39 
VXI CAJ H4  SING N N 40 
VXI CAJ H5  SING N N 41 
VXI CAK H6  SING N N 42 
VXI CAK H7  SING N N 43 
VXI CAL H8  SING N N 44 
VXI CAL H9  SING N N 45 
VXI CAM H10 SING N N 46 
VXI CAM H11 SING N N 47 
VXI CAN H12 SING N N 48 
VXI CAN H13 SING N N 49 
VXI CAO H14 SING N N 50 
VXI CAO H15 SING N N 51 
VXI CAP H16 SING N N 52 
VXI CAP H17 SING N N 53 
VXI CAR H18 SING N N 54 
VXI CAR H19 SING N N 55 
VXI CAS H21 SING N N 56 
VXI CAS H22 SING N N 57 
VXI CAW H26 SING N N 58 
VXI CAX H27 SING N N 59 
VXI CAY H28 SING N N 60 
VXI CBA H29 SING N N 61 
VXI CBD H30 SING N N 62 
VXI CBF H31 SING N N 63 
VXI CBF H32 SING N N 64 
VXI CBF H33 SING N N 65 
VXI CBG H34 SING N N 66 
VXI CBG H35 SING N N 67 
VXI CBG H36 SING N N 68 
VXI CBH H37 SING N N 69 
VXI CBH H38 SING N N 70 
VXI CBH H39 SING N N 71 
VXI CBI H40 SING N N 72 
VXI CBI H41 SING N N 73 
VXI CBI H42 SING N N 74 
VXI CAR CAT SING N N 75 
VXI CAT CAU SING Y N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VXI InChI            InChI                1.06  "InChI=1S/C28H38N2O5/c1-32-24-8-7-20(14-25(24)33-2)9-12-29-11-5-6-21(18-29)19-30-13-10-22-15-26(34-3)27(35-4)16-23(22)17-28(30)31/h7-8,14-16,21H,5-6,9-13,17-19H2,1-4H3/t21-/m0/s1" 
VXI InChIKey         InChI                1.06  OBUFMJDDZTXJPY-NRFANRHFSA-N                                                                                                                                                         
VXI SMILES_CANONICAL CACTVS               3.385 "COc1ccc(CCN2CCC[C@@H](C2)CN3CCc4cc(OC)c(OC)cc4CC3=O)cc1OC"                                                                                                                         
VXI SMILES           CACTVS               3.385 "COc1ccc(CCN2CCC[CH](C2)CN3CCc4cc(OC)c(OC)cc4CC3=O)cc1OC"                                                                                                                           
VXI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1OC)CCN2CCC[C@@H](C2)CN3CCc4cc(c(cc4CC3=O)OC)OC"                                                                                                                         
VXI SMILES           "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1OC)CCN2CCCC(C2)CN3CCc4cc(c(cc4CC3=O)OC)OC"                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           VXI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[[(3~{S})-1-[2-(3,4-dimethoxyphenyl)ethyl]piperidin-3-yl]methyl]-7,8-dimethoxy-2,5-dihydro-1~{H}-3-benzazepin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VXI "Create component" 2023-09-02 PDBJ 
VXI "Initial release"  2024-04-10 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      VXI 
_pdbx_chem_comp_synonyms.name         Cilobradine 
_pdbx_chem_comp_synonyms.provenance   PUBCHEM 
_pdbx_chem_comp_synonyms.type         ? 
# 
