data_VVI
# 
_chem_comp.id                                    VVI 
_chem_comp.name                                  "1-[4-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-5-cyano-pyridin-2-yl]-3-[5-bromanyl-6-(hydroxymethyl)-3-methoxy-pyridin-2-yl]urea" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H17 Br Cl2 N6 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        568.207 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VVI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8KH6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VVI CAA  C1  C  0 1 Y N N N N N 12.578 -5.793  28.152 -5.318 0.685  -0.301 CAA  VVI 1  
VVI CAB  C2  C  0 1 Y N N N N N 11.906 -5.744  29.374 -6.319 -0.258 -0.168 CAB  VVI 2  
VVI CAC  C3  C  0 1 Y N N N N N 10.519 -5.737  29.405 -5.989 -1.551 0.215  CAC  VVI 3  
VVI CAD  C4  C  0 1 Y N N N N N 9.834  -5.782  28.202 -4.655 -1.850 0.453  CAD  VVI 4  
VVI CAE  C5  C  0 1 Y N N N N N 10.534 -5.828  27.005 -3.699 -0.846 0.298  CAE  VVI 5  
VVI CAH  C6  C  0 1 N N N N N N 13.980 -5.795  28.114 -5.671 2.090  -0.716 CAH  VVI 6  
VVI CAL  C7  C  0 1 N N N N N N 10.313 -6.169  24.715 -1.424 -0.166 0.386  CAL  VVI 7  
VVI CAM  C8  C  0 1 N N N N N N 7.850  -5.732  29.402 -5.326 -4.073 0.966  CAM  VVI 8  
VVI CAP  C9  C  0 1 Y N N N N N 12.301 -6.755  23.559 0.846  0.524  0.359  CAP  VVI 9  
VVI CAQ  C10 C  0 1 Y N N N N N 11.707 -7.543  22.566 2.188  0.195  0.494  CAQ  VVI 10 
VVI CAR  C11 C  0 1 Y N N N N N 12.407 -7.916  21.422 3.150  1.162  0.239  CAR  VVI 11 
VVI CAS  C12 C  0 1 Y N N N N N 13.742 -7.529  21.286 2.718  2.446  -0.149 CAS  VVI 12 
VVI CAT  C13 C  0 1 Y N N N N N 14.333 -6.759  22.283 1.349  2.692  -0.261 CAT  VVI 13 
VVI CAW  C14 C  0 1 N N R N N N 10.498 -9.172  20.544 4.821  -0.481 0.627  CAW  VVI 14 
VVI CAX  C15 C  0 1 Y N N N N N 9.500  -8.364  19.953 6.128  -0.805 -0.049 CAX  VVI 15 
VVI CAY  C16 C  0 1 N N N N N N 10.368 -10.572 19.935 4.964  -0.683 2.137  CAY  VVI 16 
VVI CAZ  C17 C  0 1 Y N N N N N 8.323  -8.147  20.673 6.287  -1.987 -0.757 CAZ  VVI 17 
VVI CBA  C18 C  0 1 Y N N N N N 7.294  -7.368  20.155 7.502  -2.250 -1.365 CBA  VVI 18 
VVI CBC  C19 C  0 1 Y N N N N N 8.596  -7.031  18.149 8.383  -0.258 -0.616 CBC  VVI 19 
VVI CBD  C20 C  0 1 Y N N N N N 9.626  -7.810  18.673 7.199  0.074  0.017  CBD  VVI 20 
VVI CBG  C21 C  0 1 N N N N N N 14.514 -7.890  20.112 3.669  3.481  -0.424 CBG  VVI 21 
VVI NAF  N1  N  0 1 Y N N N N N 11.880 -5.837  27.004 -4.057 0.374  -0.064 NAF  VVI 22 
VVI NAJ  N2  N  0 1 N N N N N N 9.771  -5.868  25.906 -2.352 -1.131 0.533  NAJ  VVI 23 
VVI NAN  N3  N  0 1 N N N N N N 11.650 -6.395  24.687 -0.124 -0.441 0.613  NAN  VVI 24 
VVI NAU  N4  N  0 1 Y N N N N N 13.589 -6.390  23.422 0.473  1.744  -0.003 NAU  VVI 25 
VVI NBB  N5  N  0 1 Y N N N N N 7.425  -6.807  18.882 8.500  -1.393 -1.276 NBB  VVI 26 
VVI NBH  N6  N  0 1 N N N N N N 15.160 -8.185  19.140 4.423  4.302  -0.642 NBH  VVI 27 
VVI OAI  O1  O  0 1 N N N N N N 14.467 -4.439  28.146 -5.935 2.878  0.447  OAI  VVI 28 
VVI OAK  O2  O  0 1 N N N N N N 8.471  -5.781  28.111 -4.286 -3.103 0.830  OAK  VVI 29 
VVI OAO  O3  O  0 1 N N N N N N 9.588  -6.214  23.716 -1.758 0.953  0.049  OAO  VVI 30 
VVI OAV  O4  O  0 1 N N N N N N 11.862 -8.668  20.399 4.471  0.879  0.360  OAV  VVI 31 
VVI BRAG BR1 BR 0 0 N N N N N N 12.858 -5.681  31.006 -8.120 0.209  -0.504 BRAG VVI 32 
VVI CLBE CL1 CL 0 0 N N N N N N 11.055 -8.042  17.696 7.056  1.572  0.884  CLBE VVI 33 
VVI CLBF CL2 CL 0 0 N N N N N N 8.137  -8.840  22.246 4.979  -3.122 -0.879 CLBF VVI 34 
VVI H1   H1  H  0 1 N N N N N N 9.987  -5.697  30.344 -6.753 -2.306 0.326  H1   VVI 35 
VVI H2   H2  H  0 1 N N N N N N 14.320 -6.284  27.190 -4.838 2.525  -1.269 H2   VVI 36 
VVI H3   H3  H  0 1 N N N N N N 14.369 -6.344  28.984 -6.557 2.069  -1.350 H3   VVI 37 
VVI H4   H4  H  0 1 N N N N N N 6.756  -5.733  29.284 -5.837 -4.194 0.011  H4   VVI 38 
VVI H5   H5  H  0 1 N N N N N N 8.156  -6.610  29.989 -4.896 -5.027 1.271  H5   VVI 39 
VVI H6   H6  H  0 1 N N N N N N 8.161  -4.815  29.924 -6.039 -3.739 1.720  H6   VVI 40 
VVI H7   H7  H  0 1 N N N N N N 10.685 -7.868  22.690 2.480  -0.800 0.794  H7   VVI 41 
VVI H8   H8  H  0 1 N N N N N N 15.361 -6.444  22.184 1.005  3.672  -0.557 H8   VVI 42 
VVI H9   H9  H  0 1 N N N N N N 10.283 -9.265  21.619 4.041  -1.138 0.245  H9   VVI 43 
VVI H10  H10 H  0 1 N N N N N N 11.131 -11.234 20.371 4.018  -0.448 2.626  H10  VVI 44 
VVI H11  H11 H  0 1 N N N N N N 9.367  -10.974 20.151 5.231  -1.720 2.341  H11  VVI 45 
VVI H12  H12 H  0 1 N N N N N N 10.513 -10.513 18.846 5.744  -0.025 2.520  H12  VVI 46 
VVI H13  H13 H  0 1 N N N N N N 6.398  -7.198  20.734 7.634  -3.168 -1.918 H13  VVI 47 
VVI H14  H14 H  0 1 N N N N N N 8.703  -6.595  17.167 9.222  0.421  -0.570 H14  VVI 48 
VVI H15  H15 H  0 1 N N N N N N 8.792  -5.673  25.972 -2.085 -2.024 0.803  H15  VVI 49 
VVI H16  H16 H  0 1 N N N N N N 12.174 -6.291  25.533 0.135  -1.311 0.953  H16  VVI 50 
VVI H17  H17 H  0 1 N N N N N N 15.417 -4.442  28.120 -6.169 3.796  0.254  H17  VVI 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VVI CLBE CBD  SING N N 1  
VVI CBC  CBD  DOUB Y N 2  
VVI CBC  NBB  SING Y N 3  
VVI CBD  CAX  SING Y N 4  
VVI NBB  CBA  DOUB Y N 5  
VVI NBH  CBG  TRIP N N 6  
VVI CAY  CAW  SING N N 7  
VVI CAX  CAW  SING N N 8  
VVI CAX  CAZ  DOUB Y N 9  
VVI CBG  CAS  SING N N 10 
VVI CBA  CAZ  SING Y N 11 
VVI OAV  CAW  SING N N 12 
VVI OAV  CAR  SING N N 13 
VVI CAZ  CLBF SING N N 14 
VVI CAS  CAR  DOUB Y N 15 
VVI CAS  CAT  SING Y N 16 
VVI CAR  CAQ  SING Y N 17 
VVI CAT  NAU  DOUB Y N 18 
VVI CAQ  CAP  DOUB Y N 19 
VVI NAU  CAP  SING Y N 20 
VVI CAP  NAN  SING N N 21 
VVI OAO  CAL  DOUB N N 22 
VVI NAN  CAL  SING N N 23 
VVI CAL  NAJ  SING N N 24 
VVI NAJ  CAE  SING N N 25 
VVI NAF  CAE  DOUB Y N 26 
VVI NAF  CAA  SING Y N 27 
VVI CAE  CAD  SING Y N 28 
VVI OAK  CAD  SING N N 29 
VVI OAK  CAM  SING N N 30 
VVI CAH  OAI  SING N N 31 
VVI CAH  CAA  SING N N 32 
VVI CAA  CAB  DOUB Y N 33 
VVI CAD  CAC  DOUB Y N 34 
VVI CAB  CAC  SING Y N 35 
VVI CAB  BRAG SING N N 36 
VVI CAC  H1   SING N N 37 
VVI CAH  H2   SING N N 38 
VVI CAH  H3   SING N N 39 
VVI CAM  H4   SING N N 40 
VVI CAM  H5   SING N N 41 
VVI CAM  H6   SING N N 42 
VVI CAQ  H7   SING N N 43 
VVI CAT  H8   SING N N 44 
VVI CAW  H9   SING N N 45 
VVI CAY  H10  SING N N 46 
VVI CAY  H11  SING N N 47 
VVI CAY  H12  SING N N 48 
VVI CBA  H13  SING N N 49 
VVI CBC  H14  SING N N 50 
VVI NAJ  H15  SING N N 51 
VVI NAN  H16  SING N N 52 
VVI OAI  H17  SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VVI InChI            InChI                1.06  "InChI=1S/C21H17BrCl2N6O4/c1-10(19-13(23)7-26-8-14(19)24)34-16-4-18(27-6-11(16)5-25)29-21(32)30-20-17(33-2)3-12(22)15(9-31)28-20/h3-4,6-8,10,31H,9H2,1-2H3,(H2,27,28,29,30,32)/t10-/m1/s1" 
VVI InChIKey         InChI                1.06  QPFZVILXPYACRC-SNVBAGLBSA-N                                                                                                                                                                
VVI SMILES_CANONICAL CACTVS               3.385 "COc1cc(Br)c(CO)nc1NC(=O)Nc2cc(O[C@H](C)c3c(Cl)cncc3Cl)c(cn2)C#N"                                                                                                                          
VVI SMILES           CACTVS               3.385 "COc1cc(Br)c(CO)nc1NC(=O)Nc2cc(O[CH](C)c3c(Cl)cncc3Cl)c(cn2)C#N"                                                                                                                           
VVI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](c1c(cncc1Cl)Cl)Oc2cc(ncc2C#N)NC(=O)Nc3c(cc(c(n3)CO)Br)OC"                                                                                                                          
VVI SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1c(cncc1Cl)Cl)Oc2cc(ncc2C#N)NC(=O)Nc3c(cc(c(n3)CO)Br)OC"                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           VVI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[4-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-5-cyano-pyridin-2-yl]-3-[5-bromanyl-6-(hydroxymethyl)-3-methoxy-pyridin-2-yl]urea" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VVI "Create component" 2023-08-22 PDBJ 
VVI "Initial release"  2024-07-31 RCSB 
VVI "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VVI 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAH 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
