data_V4I
# 
_chem_comp.id                                    V4I 
_chem_comp.name                                  "3-[2-oxidanylidene-2-[[5-[[(3R)-1-pyridazin-3-ylpyrrolidin-3-yl]amino]-1,3,4-thiadiazol-2-yl]amino]ethyl]benzoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H19 N7 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-05 
_chem_comp.pdbx_modified_date                    2023-10-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        425.464 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V4I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8JUB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V4I O1  O1  O 0 1 N N N -0.929  -8.817  44.785 -3.106 0.319  0.399  O1  V4I 1  
V4I C1  C1  C 0 1 N N N -1.057  -9.051  45.985 -3.345 1.354  -0.188 C1  V4I 2  
V4I N1  N1  N 0 1 N N N -1.776  -10.116 46.459 -2.335 2.095  -0.685 N1  V4I 3  
V4I C2  C2  C 0 1 Y N N -2.701  -10.946 45.874 -1.017 1.674  -0.524 C2  V4I 4  
V4I N2  N2  N 0 1 Y N N -3.392  -11.883 46.540 -0.644 0.592  0.082  N2  V4I 5  
V4I N3  N3  N 0 1 Y N N -4.314  -12.603 45.763 0.715  0.371  0.124  N3  V4I 6  
V4I C3  C3  C 0 1 Y N N -4.302  -12.244 44.476 1.448  1.275  -0.448 C3  V4I 7  
V4I N4  N4  N 0 1 N N N -5.096  -12.859 43.623 2.835  1.257  -0.526 N4  V4I 8  
V4I C4  C4  C 0 1 N N R -6.088  -13.777 44.141 3.587  0.150  0.071  C4  V4I 9  
V4I C5  C5  C 0 1 N N N -6.539  -14.813 43.104 3.927  0.466  1.545  C5  V4I 10 
V4I C6  C6  C 0 1 N N N -7.135  -13.928 42.032 5.366  -0.088 1.696  C6  V4I 11 
V4I N5  N5  N 0 1 N N N -7.888  -12.966 42.838 5.993  0.235  0.388  N5  V4I 12 
V4I C7  C7  C 0 1 Y N N -8.834  -12.106 42.353 7.109  -0.563 0.160  C7  V4I 13 
V4I C8  C8  C 0 1 Y N N -9.582  -11.282 43.193 8.188  -0.528 1.042  C8  V4I 14 
V4I C9  C9  C 0 1 Y N N -10.509 -10.461 42.634 9.275  -1.343 0.770  C9  V4I 15 
V4I C10 C10 C 0 1 Y N N -10.661 -10.430 41.238 9.224  -2.142 -0.363 C10 V4I 16 
V4I N6  N6  N 0 1 Y N N -9.925  -11.235 40.483 8.162  -2.112 -1.144 N6  V4I 17 
V4I N7  N7  N 0 1 Y N N -9.003  -12.056 41.019 7.149  -1.365 -0.895 N7  V4I 18 
V4I C11 C11 C 0 1 N N N -7.445  -13.044 44.233 4.949  -0.009 -0.631 C11 V4I 19 
V4I S1  S1  S 0 1 Y N N -3.084  -10.922 44.075 0.405  2.525  -1.118 S1  V4I 20 
V4I C12 C12 C 0 1 N N N -0.384  -8.164  47.026 -4.771 1.806  -0.368 C12 V4I 21 
V4I C13 C13 C 0 1 Y N N -1.259  -7.068  47.597 -5.699 0.804  0.269  C13 V4I 22 
V4I C14 C14 C 0 1 Y N N -1.610  -5.976  46.815 -6.179 -0.257 -0.472 C14 V4I 23 
V4I C15 C15 C 0 1 Y N N -2.427  -4.966  47.313 -7.040 -1.184 0.120  C15 V4I 24 
V4I C16 C16 C 0 1 N N N -2.806  -3.810  46.421 -7.557 -2.322 -0.666 C16 V4I 25 
V4I O2  O2  O 0 1 N N N -2.276  -2.685  46.628 -8.387 -3.215 -0.093 O2  V4I 26 
V4I O3  O3  O 0 1 N N N -3.632  -4.040  45.499 -7.234 -2.454 -1.830 O3  V4I 27 
V4I C17 C17 C 0 1 Y N N -2.903  -5.046  48.618 -7.408 -1.030 1.458  C17 V4I 28 
V4I C18 C18 C 0 1 Y N N -2.566  -6.123  49.414 -6.921 0.035  2.186  C18 V4I 29 
V4I C19 C19 C 0 1 Y N N -1.749  -7.122  48.901 -6.064 0.947  1.595  C19 V4I 30 
V4I H1  H1  H 0 1 N N N -1.592  -10.331 47.418 -2.526 2.922  -1.154 H1  V4I 31 
V4I H2  H2  H 0 1 N N N -4.513  -13.377 42.997 3.305  1.976  -0.975 H2  V4I 32 
V4I H3  H3  H 0 1 N N N -5.803  -14.241 45.097 3.016  -0.775 0.002  H3  V4I 33 
V4I H4  H4  H 0 1 N N N -7.290  -15.499 43.522 3.907  1.541  1.724  H4  V4I 34 
V4I H5  H5  H 0 1 N N N -5.687  -15.393 42.719 3.241  -0.048 2.218  H5  V4I 35 
V4I H6  H6  H 0 1 N N N -7.797  -14.497 41.362 5.890  0.416  2.508  H6  V4I 36 
V4I H7  H7  H 0 1 N N N -6.353  -13.431 41.439 5.348  -1.166 1.858  H7  V4I 37 
V4I H8  H8  H 0 1 N N N -9.428  -11.296 44.262 8.176  0.114  1.911  H8  V4I 38 
V4I H9  H9  H 0 1 N N N -11.127 -9.835  43.261 10.138 -1.355 1.420  H9  V4I 39 
V4I H10 H10 H 0 1 N N N -11.372 -9.756  40.783 10.054 -2.789 -0.606 H10 V4I 40 
V4I H11 H11 H 0 1 N N N -7.321  -12.039 44.663 5.046  -1.020 -1.027 H11 V4I 41 
V4I H12 H12 H 0 1 N N N -8.161  -13.617 44.841 5.039  0.719  -1.437 H12 V4I 42 
V4I H13 H13 H 0 1 N N N -0.054  -8.804  47.857 -4.906 2.778  0.106  H13 V4I 43 
V4I H14 H14 H 0 1 N N N 0.492   -7.692  46.557 -4.996 1.885  -1.431 H14 V4I 44 
V4I H15 H15 H 0 1 N N N -1.242  -5.909  45.802 -5.891 -0.369 -1.506 H15 V4I 45 
V4I H16 H16 H 0 1 N N N -2.597  -2.061  45.988 -8.699 -3.943 -0.647 H16 V4I 46 
V4I H17 H17 H 0 1 N N N -3.537  -4.264  49.009 -8.073 -1.744 1.921  H17 V4I 47 
V4I H18 H18 H 0 1 N N N -2.935  -6.188  50.427 -7.206 0.155  3.221  H18 V4I 48 
V4I H19 H19 H 0 1 N N N -1.487  -7.962  49.528 -5.682 1.777  2.172  H19 V4I 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V4I N6  N7  DOUB Y N 1  
V4I N6  C10 SING Y N 2  
V4I N7  C7  SING Y N 3  
V4I C10 C9  DOUB Y N 4  
V4I C6  N5  SING N N 5  
V4I C6  C5  SING N N 6  
V4I C7  N5  SING N N 7  
V4I C7  C8  DOUB Y N 8  
V4I C9  C8  SING Y N 9  
V4I N5  C11 SING N N 10 
V4I C5  C4  SING N N 11 
V4I N4  C4  SING N N 12 
V4I N4  C3  SING N N 13 
V4I S1  C3  SING Y N 14 
V4I S1  C2  SING Y N 15 
V4I C4  C11 SING N N 16 
V4I C3  N3  DOUB Y N 17 
V4I O1  C1  DOUB N N 18 
V4I O3  C16 DOUB N N 19 
V4I N3  N2  SING Y N 20 
V4I C2  N1  SING N N 21 
V4I C2  N2  DOUB Y N 22 
V4I C1  N1  SING N N 23 
V4I C1  C12 SING N N 24 
V4I C16 O2  SING N N 25 
V4I C16 C15 SING N N 26 
V4I C14 C15 DOUB Y N 27 
V4I C14 C13 SING Y N 28 
V4I C12 C13 SING N N 29 
V4I C15 C17 SING Y N 30 
V4I C13 C19 DOUB Y N 31 
V4I C17 C18 DOUB Y N 32 
V4I C19 C18 SING Y N 33 
V4I N1  H1  SING N N 34 
V4I N4  H2  SING N N 35 
V4I C4  H3  SING N N 36 
V4I C5  H4  SING N N 37 
V4I C5  H5  SING N N 38 
V4I C6  H6  SING N N 39 
V4I C6  H7  SING N N 40 
V4I C8  H8  SING N N 41 
V4I C9  H9  SING N N 42 
V4I C10 H10 SING N N 43 
V4I C11 H11 SING N N 44 
V4I C11 H12 SING N N 45 
V4I C12 H13 SING N N 46 
V4I C12 H14 SING N N 47 
V4I C14 H15 SING N N 48 
V4I O2  H16 SING N N 49 
V4I C17 H17 SING N N 50 
V4I C18 H18 SING N N 51 
V4I C19 H19 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V4I InChI            InChI                1.06  "InChI=1S/C19H19N7O3S/c27-16(10-12-3-1-4-13(9-12)17(28)29)22-19-25-24-18(30-19)21-14-6-8-26(11-14)15-5-2-7-20-23-15/h1-5,7,9,14H,6,8,10-11H2,(H,21,24)(H,28,29)(H,22,25,27)/t14-/m1/s1" 
V4I InChIKey         InChI                1.06  HMCXTWYQJBJKRJ-CQSZACIVSA-N                                                                                                                                                             
V4I SMILES_CANONICAL CACTVS               3.385 "OC(=O)c1cccc(CC(=O)Nc2sc(N[C@@H]3CCN(C3)c4cccnn4)nn2)c1"                                                                                                                               
V4I SMILES           CACTVS               3.385 "OC(=O)c1cccc(CC(=O)Nc2sc(N[CH]3CCN(C3)c4cccnn4)nn2)c1"                                                                                                                                 
V4I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)O)CC(=O)Nc2nnc(s2)N[C@@H]3CCN(C3)c4cccnn4"                                                                                                                             
V4I SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)O)CC(=O)Nc2nnc(s2)NC3CCN(C3)c4cccnn4"                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           V4I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[2-oxidanylidene-2-[[5-[[(3~{R})-1-pyridazin-3-ylpyrrolidin-3-yl]amino]-1,3,4-thiadiazol-2-yl]amino]ethyl]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V4I "Create component" 2023-07-05 PDBJ 
V4I "Initial release"  2023-10-11 RCSB 
# 
