data_U3I
# 
_chem_comp.id                                    U3I 
_chem_comp.name                                  "(3S)-3-(5-{(1R)-1-[(2R)-1-ethylpiperidin-2-yl]ethoxy}-1-oxo-1,3-dihydro-2H-isoindol-2-yl)piperidine-2,6-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H29 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-29 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        399.483 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U3I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TZX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U3I C1  C1  C 0 1 Y N N N N N -13.990 26.589 35.155 1.023  1.369  -0.086 C1  U3I 1  
U3I C2  C2  C 0 1 Y N N N N N -14.714 27.486 35.965 1.080  -0.001 0.142  C2  U3I 2  
U3I C3  C3  C 0 1 Y N N N N N -16.092 27.329 36.116 -0.088 -0.715 0.391  C3  U3I 3  
U3I C12 C4  C 0 1 N N S N N N -19.472 24.023 34.306 -5.015 0.701  0.681  C12 U3I 4  
U3I C13 C5  C 0 1 N N N N N N -19.956 23.329 35.603 -5.660 1.093  -0.653 C13 U3I 5  
U3I C14 C6  C 0 1 N N N N N N -21.374 22.741 35.437 -5.358 -0.002 -1.681 C14 U3I 6  
U3I C15 C7  C 0 1 N N N N N N -22.316 23.785 34.898 -5.834 -1.327 -1.147 C15 U3I 7  
U3I C17 C8  C 0 1 N N N N N N -20.527 24.992 33.822 -5.510 -0.663 1.087  C17 U3I 8  
U3I C20 C9  C 0 1 N N R N N N -13.391 28.529 37.873 3.426  0.141  -0.201 C20 U3I 9  
U3I C21 C10 C 0 1 N N R N N N -12.966 30.017 38.087 4.678  -0.535 0.361  C21 U3I 10 
U3I C22 C11 C 0 1 N N N N N N -14.247 27.968 39.045 3.551  0.260  -1.722 C22 U3I 11 
U3I C24 C12 C 0 1 N N N N N N -12.278 31.186 35.899 7.095  -0.400 0.466  C24 U3I 12 
U3I C25 C13 C 0 1 N N N N N N -10.844 31.327 36.462 7.234  -1.842 -0.028 C25 U3I 13 
U3I C26 C14 C 0 1 N N N N N N -10.515 30.089 37.318 6.009  -2.647 0.414  C26 U3I 14 
U3I C27 C15 C 0 1 N N N N N N -11.473 30.112 38.528 4.744  -1.981 -0.136 C27 U3I 15 
U3I C28 C16 C 0 1 N N N N N N -14.345 31.972 37.157 5.777  1.619  0.253  C28 U3I 16 
U3I C29 C17 C 0 1 N N N N N N -15.050 32.538 35.893 6.837  2.401  -0.525 C29 U3I 17 
U3I C4  C18 C 0 1 Y N N N N N -16.736 26.287 35.463 -1.297 -0.065 0.411  C4  U3I 18 
U3I C5  C19 C 0 1 Y N N N N N -16.021 25.408 34.665 -1.364 1.313  0.182  C5  U3I 19 
U3I C6  C20 C 0 1 Y N N N N N -14.641 25.537 34.491 -0.187 2.027  -0.062 C6  U3I 20 
U3I C7  C21 C 0 1 N N N N N N -18.222 25.940 35.498 -2.714 -0.527 0.643  C7  U3I 21 
U3I C9  C22 C 0 1 N N N N N N -17.042 24.433 34.136 -2.775 1.727  0.263  C9  U3I 22 
U3I N16 N1  N 0 1 N N N N N N -21.827 24.801 34.150 -5.874 -1.572 0.171  N16 U3I 23 
U3I N23 N2  N 0 1 N N N N N N -13.322 30.908 36.929 5.871  0.193  -0.087 N23 U3I 24 
U3I N8  N3  N 0 1 N N N N N N -18.258 24.768 34.619 -3.558 0.668  0.529  N8  U3I 25 
U3I O10 O1  O 0 1 N N N N N N -16.775 23.506 33.389 -3.175 2.865  0.112  O10 U3I 26 
U3I O11 O2  O 0 1 N N N N N N -14.153 28.565 36.656 2.276  -0.642 0.122  O11 U3I 27 
U3I O18 O3  O 0 1 N N N N N N -20.179 25.943 33.137 -5.578 -0.943 2.264  O18 U3I 28 
U3I O19 O4  O 0 1 N N N N N N -23.505 23.678 35.151 -6.187 -2.189 -1.923 O19 U3I 29 
U3I H1  H1  H 0 1 N N N N N N -12.923 26.712 35.044 1.931  1.920  -0.279 H1  U3I 30 
U3I H2  H2  H 0 1 N N N N N N -16.653 28.013 36.736 -0.043 -1.780 0.569  H2  U3I 31 
U3I H3  H3  H 0 1 N N N N N N -19.276 23.264 33.534 -5.286 1.430  1.444  H3  U3I 32 
U3I H4  H4  H 0 1 N N N N N N -19.259 22.516 35.854 -6.738 1.187  -0.525 H4  U3I 33 
U3I H5  H5  H 0 1 N N N N N N -19.968 24.066 36.419 -5.247 2.042  -0.994 H5  U3I 34 
U3I H6  H6  H 0 1 N N N N N N -21.739 22.394 36.415 -5.876 0.221  -2.614 H6  U3I 35 
U3I H7  H7  H 0 1 N N N N N N -21.335 21.893 34.738 -4.284 -0.046 -1.863 H7  U3I 36 
U3I H8  H8  H 0 1 N N N N N N -12.490 27.910 37.754 3.323  1.135  0.234  H8  U3I 37 
U3I H9  H9  H 0 1 N N N N N N -13.554 30.375 38.945 4.636  -0.527 1.451  H9  U3I 38 
U3I H10 H10 H 0 1 N N N N N N -13.644 27.950 39.965 3.727  -0.727 -2.150 H10 U3I 39 
U3I H11 H11 H 0 1 N N N N N N -15.127 28.611 39.197 2.630  0.675  -2.131 H11 U3I 40 
U3I H12 H12 H 0 1 N N N N N N -14.576 26.947 38.802 4.386  0.916  -1.967 H12 U3I 41 
U3I H13 H13 H 0 1 N N N N N N -12.540 32.124 35.388 7.042  -0.393 1.555  H13 U3I 42 
U3I H14 H14 H 0 1 N N N N N N -12.283 30.359 35.173 7.959  0.180  0.141  H14 U3I 43 
U3I H15 H15 H 0 1 N N N N N N -10.127 31.401 35.631 7.301  -1.849 -1.116 H15 U3I 44 
U3I H16 H16 H 0 1 N N N N N N -10.780 32.232 37.083 8.134  -2.287 0.396  H16 U3I 45 
U3I H17 H17 H 0 1 N N N N N N -10.669 29.172 36.731 6.082  -3.664 0.027  H17 U3I 46 
U3I H18 H18 H 0 1 N N N N N N -9.471  30.133 37.661 5.963  -2.674 1.502  H18 U3I 47 
U3I H19 H19 H 0 1 N N N N N N -11.240 29.259 39.183 3.866  -2.526 0.211  H19 U3I 48 
U3I H20 H20 H 0 1 N N N N N N -11.324 31.051 39.082 4.772  -1.990 -1.226 H20 U3I 49 
U3I H21 H21 H 0 1 N N N N N N -13.847 32.811 37.666 5.942  1.749  1.323  H21 U3I 50 
U3I H22 H22 H 0 1 N N N N N N -15.122 31.554 37.814 4.786  1.990  -0.009 H22 U3I 51 
U3I H23 H23 H 0 1 N N N N N N -15.776 33.309 36.192 6.672  2.271  -1.595 H23 U3I 52 
U3I H24 H24 H 0 1 N N N N N N -14.299 32.981 35.222 6.767  3.459  -0.272 H24 U3I 53 
U3I H25 H25 H 0 1 N N N N N N -15.574 31.724 35.370 7.828  2.030  -0.263 H25 U3I 54 
U3I H26 H26 H 0 1 N N N N N N -14.092 24.849 33.865 -0.227 3.091  -0.240 H26 U3I 55 
U3I H27 H27 H 0 1 N N N N N N -18.838 26.761 35.102 -2.998 -1.260 -0.113 H27 U3I 56 
U3I H28 H28 H 0 1 N N N N N N -18.555 25.691 36.517 -2.809 -0.961 1.639  H28 U3I 57 
U3I H29 H29 H 0 1 N N N N N N -22.485 25.472 33.808 -6.180 -2.442 0.475  H29 U3I 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U3I O18 C17 DOUB N N 1  
U3I O10 C9  DOUB N N 2  
U3I C17 N16 SING N N 3  
U3I C17 C12 SING N N 4  
U3I C9  N8  SING N N 5  
U3I C9  C5  SING N N 6  
U3I N16 C15 SING N N 7  
U3I C12 N8  SING N N 8  
U3I C12 C13 SING N N 9  
U3I C6  C5  DOUB Y N 10 
U3I C6  C1  SING Y N 11 
U3I N8  C7  SING N N 12 
U3I C5  C4  SING Y N 13 
U3I C15 O19 DOUB N N 14 
U3I C15 C14 SING N N 15 
U3I C1  C2  DOUB Y N 16 
U3I C14 C13 SING N N 17 
U3I C4  C7  SING N N 18 
U3I C4  C3  DOUB Y N 19 
U3I C29 C28 SING N N 20 
U3I C24 C25 SING N N 21 
U3I C24 N23 SING N N 22 
U3I C2  C3  SING Y N 23 
U3I C2  O11 SING N N 24 
U3I C25 C26 SING N N 25 
U3I O11 C20 SING N N 26 
U3I N23 C28 SING N N 27 
U3I N23 C21 SING N N 28 
U3I C26 C27 SING N N 29 
U3I C20 C21 SING N N 30 
U3I C20 C22 SING N N 31 
U3I C21 C27 SING N N 32 
U3I C1  H1  SING N N 33 
U3I C3  H2  SING N N 34 
U3I C12 H3  SING N N 35 
U3I C13 H4  SING N N 36 
U3I C13 H5  SING N N 37 
U3I C14 H6  SING N N 38 
U3I C14 H7  SING N N 39 
U3I C20 H8  SING N N 40 
U3I C21 H9  SING N N 41 
U3I C22 H10 SING N N 42 
U3I C22 H11 SING N N 43 
U3I C22 H12 SING N N 44 
U3I C24 H13 SING N N 45 
U3I C24 H14 SING N N 46 
U3I C25 H15 SING N N 47 
U3I C25 H16 SING N N 48 
U3I C26 H17 SING N N 49 
U3I C26 H18 SING N N 50 
U3I C27 H19 SING N N 51 
U3I C27 H20 SING N N 52 
U3I C28 H21 SING N N 53 
U3I C28 H22 SING N N 54 
U3I C29 H23 SING N N 55 
U3I C29 H24 SING N N 56 
U3I C29 H25 SING N N 57 
U3I C6  H26 SING N N 58 
U3I C7  H27 SING N N 59 
U3I C7  H28 SING N N 60 
U3I N16 H29 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U3I SMILES           ACDLabs              12.01 "CCN1CCCCC1C(C)Oc1cc2CN(C3CCC(=O)NC3=O)C(=O)c2cc1"                                                                                                                                     
U3I InChI            InChI                1.06  "InChI=1S/C22H29N3O4/c1-3-24-11-5-4-6-18(24)14(2)29-16-7-8-17-15(12-16)13-25(22(17)28)19-9-10-20(26)23-21(19)27/h7-8,12,14,18-19H,3-6,9-11,13H2,1-2H3,(H,23,26,27)/t14-,18-,19+/m1/s1" 
U3I InChIKey         InChI                1.06  FVZCFUKXGUUDBQ-ZMYBRWDISA-N                                                                                                                                                            
U3I SMILES_CANONICAL CACTVS               3.385 "CCN1CCCC[C@@H]1[C@@H](C)Oc2ccc3C(=O)N(Cc3c2)[C@H]4CCC(=O)NC4=O"                                                                                                                       
U3I SMILES           CACTVS               3.385 "CCN1CCCC[CH]1[CH](C)Oc2ccc3C(=O)N(Cc3c2)[CH]4CCC(=O)NC4=O"                                                                                                                            
U3I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN1CCCC[C@@H]1[C@@H](C)Oc2ccc3c(c2)CN(C3=O)[C@H]4CCC(=O)NC4=O"                                                                                                                       
U3I SMILES           "OpenEye OEToolkits" 2.0.7 "CCN1CCCCC1C(C)Oc2ccc3c(c2)CN(C3=O)C4CCC(=O)NC4=O"                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
U3I "SYSTEMATIC NAME" ACDLabs              12.01 "(3S)-3-(5-{(1R)-1-[(2R)-1-ethylpiperidin-2-yl]ethoxy}-1-oxo-1,3-dihydro-2H-isoindol-2-yl)piperidine-2,6-dione"           
U3I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[6-[(1~{R})-1-[(2~{R})-1-ethylpiperidin-2-yl]ethoxy]-3-oxidanylidene-1~{H}-isoindol-2-yl]piperidine-2,6-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U3I "Create component" 2023-08-29 RCSB 
U3I "Initial release"  2024-07-10 RCSB 
# 
