data_SJI
# 
_chem_comp.id                                    SJI 
_chem_comp.name                                  "N-ethyl-1-{(3S,4S)-1-[(1-hydroxycyclohexyl)methyl]-3-methylpiperidin-4-yl}-2-methyl-1H-benzimidazole-5-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H36 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-06 
_chem_comp.pdbx_modified_date                    2023-01-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        412.568 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SJI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DKB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SJI C32 C1  C 0 1 N N N 9.598  17.083 -13.424 1.208  -4.863 -0.094 C32 SJI 1  
SJI N3  N1  N 0 1 N N N 15.699 14.335 -9.554  4.990  2.697  0.061  N3  SJI 2  
SJI C4  C2  C 0 1 N N N 15.558 15.643 -9.318  5.182  1.369  -0.061 C4  SJI 3  
SJI C7  C3  C 0 1 Y N N 14.058 17.624 -9.433  2.736  0.958  0.175  C7  SJI 4  
SJI C6  C4  C 0 1 Y N N 14.292 16.292 -9.781  4.029  0.448  -0.005 C6  SJI 5  
SJI C9  C5  C 0 1 Y N N 12.194 17.690 -10.898 1.844  -1.256 0.107  C9  SJI 6  
SJI C13 C6  C 0 1 Y N N 10.734 17.037 -12.468 1.746  -3.456 -0.048 C13 SJI 7  
SJI C20 C7  C 0 1 N N N 10.603 21.922 -11.918 -2.595 -1.358 -0.618 C20 SJI 8  
SJI C21 C8  C 0 1 N N S 11.375 20.593 -12.006 -1.083 -1.453 -0.832 C21 SJI 9  
SJI C8  C9  C 0 1 Y N N 12.999 18.333 -9.972  1.663  0.117  0.232  C8  SJI 10 
SJI C18 C10 C 0 1 N N N 9.075  21.068 -10.259 -2.325 -1.552 1.783  C18 SJI 11 
SJI C26 C11 C 0 1 N N N 10.934 25.020 -9.815  -6.196 1.047  0.354  C26 SJI 12 
SJI C1  C12 C 0 1 N N N 16.309 12.189 -8.584  5.645  5.051  0.169  C1  SJI 13 
SJI C2  C13 C 0 1 N N N 16.787 13.527 -9.006  6.134  3.611  0.006  C2  SJI 14 
SJI O5  O1  O 0 1 N N N 16.458 16.316 -8.822  6.304  0.928  -0.217 O5  SJI 15 
SJI C10 C14 C 0 1 Y N N 12.401 16.363 -11.266 3.134  -1.785 -0.079 C10 SJI 16 
SJI C11 C15 C 0 1 Y N N 13.447 15.643 -10.684 4.229  -0.923 -0.132 C11 SJI 17 
SJI N12 N2  N 0 1 Y N N 11.482 15.982 -12.249 3.001  -3.134 -0.166 N12 SJI 18 
SJI N14 N3  N 0 1 Y N N 11.114 18.115 -11.679 0.990  -2.337 0.122  N14 SJI 19 
SJI C15 C16 C 0 1 N N S 10.453 19.441 -11.620 -0.465 -2.291 0.290  C15 SJI 20 
SJI C17 C17 C 0 1 N N N 9.806  19.726 -10.271 -0.804 -1.653 1.639  C17 SJI 21 
SJI N19 N4  N 0 1 N N N 9.972  22.173 -10.612 -2.868 -0.740 0.686  N19 SJI 22 
SJI C23 C18 C 0 1 N N N 12.047 20.443 -13.365 -0.800 -2.117 -2.181 C23 SJI 23 
SJI C24 C19 C 0 1 N N N 9.190  23.413 -10.653 -4.307 -0.506 0.867  C24 SJI 24 
SJI C25 C20 C 0 1 N N N 9.517  24.476 -9.621  -4.729 0.725  0.062  C25 SJI 25 
SJI C27 C21 C 0 1 N N N 11.292 26.292 -9.050  -6.618 2.278  -0.451 C27 SJI 26 
SJI C28 C22 C 0 1 N N N 10.253 27.381 -9.274  -5.745 3.470  -0.056 C28 SJI 27 
SJI C29 C23 C 0 1 N N N 8.851  26.876 -8.931  -4.278 3.148  -0.349 C29 SJI 28 
SJI C30 C24 C 0 1 N N N 8.506  25.615 -9.725  -3.856 1.917  0.457  C30 SJI 29 
SJI O31 O2  O 0 1 N N N 9.390  23.899 -8.304  -4.569 0.459  -1.333 O31 SJI 30 
SJI H1  H1  H 0 1 N N N 9.488  16.103 -13.911 1.260  -5.305 0.900  H1  SJI 31 
SJI H2  H2  H 0 1 N N N 8.673  17.329 -12.882 0.171  -4.844 -0.430 H2  SJI 32 
SJI H3  H3  H 0 1 N N N 9.792  17.852 -14.187 1.804  -5.457 -0.788 H3  SJI 33 
SJI H4  H4  H 0 1 N N N 15.023 13.884 -10.137 4.095  3.049  0.185  H4  SJI 34 
SJI H5  H5  H 0 1 N N N 14.717 18.111 -8.729  2.588  2.023  0.273  H5  SJI 35 
SJI H6  H6  H 0 1 N N N 11.306 22.743 -12.124 -3.037 -0.749 -1.407 H6  SJI 36 
SJI H7  H7  H 0 1 N N N 9.815  21.913 -12.685 -3.029 -2.357 -0.644 H7  SJI 37 
SJI H8  H8  H 0 1 N N N 12.174 20.635 -11.252 -0.650 -0.452 -0.820 H8  SJI 38 
SJI H9  H9  H 0 1 N N N 12.806 19.355 -9.680  0.670  0.519  0.374  H9  SJI 39 
SJI H10 H10 H 0 1 N N N 8.669  21.245 -9.252  -2.760 -2.550 1.745  H10 SJI 40 
SJI H11 H11 H 0 1 N N N 8.250  21.032 -10.985 -2.570 -1.084 2.736  H11 SJI 41 
SJI H12 H12 H 0 1 N N N 11.638 24.234 -9.503  -6.818 0.198  0.072  H12 SJI 42 
SJI H13 H13 H 0 1 N N N 11.067 25.227 -10.887 -6.318 1.250  1.418  H13 SJI 43 
SJI H14 H14 H 0 1 N N N 17.151 11.610 -8.178  6.496  5.731  0.128  H14 SJI 44 
SJI H15 H15 H 0 1 N N N 15.536 12.303 -7.810  4.949  5.292  -0.635 H15 SJI 45 
SJI H16 H16 H 0 1 N N N 15.885 11.661 -9.451  5.141  5.157  1.130  H16 SJI 46 
SJI H17 H17 H 0 1 N N N 17.563 13.403 -9.776  6.830  3.370  0.809  H17 SJI 47 
SJI H18 H18 H 0 1 N N N 17.214 14.045 -8.135  6.638  3.504  -0.955 H18 SJI 48 
SJI H19 H19 H 0 1 N N N 13.600 14.602 -10.928 5.225  -1.316 -0.275 H19 SJI 49 
SJI H20 H20 H 0 1 N N N 9.640  19.429 -12.361 -0.868 -3.303 0.253  H20 SJI 50 
SJI H21 H21 H 0 1 N N N 9.084  18.926 -10.047 -0.367 -0.655 1.691  H21 SJI 51 
SJI H22 H22 H 0 1 N N N 10.588 19.741 -9.498  -0.403 -2.268 2.444  H22 SJI 52 
SJI H24 H24 H 0 1 N N N 12.591 19.488 -13.402 -1.243 -1.521 -2.980 H24 SJI 53 
SJI H25 H25 H 0 1 N N N 11.283 20.461 -14.156 0.278  -2.184 -2.334 H25 SJI 54 
SJI H26 H26 H 0 1 N N N 12.753 21.273 -13.518 -1.232 -3.117 -2.192 H26 SJI 55 
SJI H27 H27 H 0 1 N N N 9.334  23.862 -11.647 -4.863 -1.376 0.519  H27 SJI 56 
SJI H28 H28 H 0 1 N N N 8.132  23.141 -10.523 -4.518 -0.338 1.923  H28 SJI 57 
SJI H29 H29 H 0 1 N N N 11.344 26.062 -7.976  -6.496 2.075  -1.515 H29 SJI 58 
SJI H30 H30 H 0 1 N N N 12.272 26.654 -9.395  -7.663 2.507  -0.243 H30 SJI 59 
SJI H31 H31 H 0 1 N N N 10.492 28.244 -8.634  -6.045 4.347  -0.630 H31 SJI 60 
SJI H32 H32 H 0 1 N N N 10.276 27.690 -10.330 -5.867 3.673  1.008  H32 SJI 61 
SJI H33 H33 H 0 1 N N N 8.119  27.661 -9.170  -4.156 2.945  -1.413 H33 SJI 62 
SJI H34 H34 H 0 1 N N N 8.806  26.647 -7.856  -3.656 3.997  -0.067 H34 SJI 63 
SJI H35 H35 H 0 1 N N N 8.419  25.895 -10.785 -3.978 2.120  1.521  H35 SJI 64 
SJI H36 H36 H 0 1 N N N 7.536  25.242 -9.364  -2.811 1.687  0.249  H36 SJI 65 
SJI H37 H37 H 0 1 N N N 9.593  24.556 -7.649  -4.818 1.197  -1.906 H37 SJI 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SJI C32 C13 SING N N 1  
SJI C23 C21 SING N N 2  
SJI C13 N12 DOUB Y N 3  
SJI C13 N14 SING Y N 4  
SJI N12 C10 SING Y N 5  
SJI C21 C20 SING N N 6  
SJI C21 C15 SING N N 7  
SJI C20 N19 SING N N 8  
SJI N14 C15 SING N N 9  
SJI N14 C9  SING Y N 10 
SJI C15 C17 SING N N 11 
SJI C10 C9  DOUB Y N 12 
SJI C10 C11 SING Y N 13 
SJI C9  C8  SING Y N 14 
SJI C11 C6  DOUB Y N 15 
SJI C24 N19 SING N N 16 
SJI C24 C25 SING N N 17 
SJI N19 C18 SING N N 18 
SJI C17 C18 SING N N 19 
SJI C8  C7  DOUB Y N 20 
SJI C26 C25 SING N N 21 
SJI C26 C27 SING N N 22 
SJI C6  C7  SING Y N 23 
SJI C6  C4  SING N N 24 
SJI C30 C25 SING N N 25 
SJI C30 C29 SING N N 26 
SJI C25 O31 SING N N 27 
SJI N3  C4  SING N N 28 
SJI N3  C2  SING N N 29 
SJI C4  O5  DOUB N N 30 
SJI C28 C27 SING N N 31 
SJI C28 C29 SING N N 32 
SJI C2  C1  SING N N 33 
SJI C32 H1  SING N N 34 
SJI C32 H2  SING N N 35 
SJI C32 H3  SING N N 36 
SJI N3  H4  SING N N 37 
SJI C7  H5  SING N N 38 
SJI C20 H6  SING N N 39 
SJI C20 H7  SING N N 40 
SJI C21 H8  SING N N 41 
SJI C8  H9  SING N N 42 
SJI C18 H10 SING N N 43 
SJI C18 H11 SING N N 44 
SJI C26 H12 SING N N 45 
SJI C26 H13 SING N N 46 
SJI C1  H14 SING N N 47 
SJI C1  H15 SING N N 48 
SJI C1  H16 SING N N 49 
SJI C2  H17 SING N N 50 
SJI C2  H18 SING N N 51 
SJI C11 H19 SING N N 52 
SJI C15 H20 SING N N 53 
SJI C17 H21 SING N N 54 
SJI C17 H22 SING N N 55 
SJI C23 H24 SING N N 56 
SJI C23 H25 SING N N 57 
SJI C23 H26 SING N N 58 
SJI C24 H27 SING N N 59 
SJI C24 H28 SING N N 60 
SJI C27 H29 SING N N 61 
SJI C27 H30 SING N N 62 
SJI C28 H31 SING N N 63 
SJI C28 H32 SING N N 64 
SJI C29 H33 SING N N 65 
SJI C29 H34 SING N N 66 
SJI C30 H35 SING N N 67 
SJI C30 H36 SING N N 68 
SJI O31 H37 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SJI SMILES           ACDLabs              12.01 "CCNC(=O)c1cc2nc(C)n(C3CCN(CC4(O)CCCCC4)CC3C)c2cc1"                                                                                                                                    
SJI InChI            InChI                1.06  "InChI=1S/C24H36N4O2/c1-4-25-23(29)19-8-9-22-20(14-19)26-18(3)28(22)21-10-13-27(15-17(21)2)16-24(30)11-6-5-7-12-24/h8-9,14,17,21,30H,4-7,10-13,15-16H2,1-3H3,(H,25,29)/t17-,21-/m0/s1" 
SJI InChIKey         InChI                1.06  WGCGFOZDARLLJO-UWJYYQICSA-N                                                                                                                                                            
SJI SMILES_CANONICAL CACTVS               3.385 "CCNC(=O)c1ccc2n([C@H]3CCN(C[C@@H]3C)CC4(O)CCCCC4)c(C)nc2c1"                                                                                                                           
SJI SMILES           CACTVS               3.385 "CCNC(=O)c1ccc2n([CH]3CCN(C[CH]3C)CC4(O)CCCCC4)c(C)nc2c1"                                                                                                                              
SJI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCNC(=O)c1ccc2c(c1)nc(n2[C@H]3CCN(C[C@@H]3C)CC4(CCCCC4)O)C"                                                                                                                           
SJI SMILES           "OpenEye OEToolkits" 2.0.7 "CCNC(=O)c1ccc2c(c1)nc(n2C3CCN(CC3C)CC4(CCCCC4)O)C"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SJI "SYSTEMATIC NAME" ACDLabs              12.01 "N-ethyl-1-{(3S,4S)-1-[(1-hydroxycyclohexyl)methyl]-3-methylpiperidin-4-yl}-2-methyl-1H-benzimidazole-5-carboxamide"       
SJI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-ethyl-2-methyl-1-[(3~{S},4~{S})-3-methyl-1-[(1-oxidanylcyclohexyl)methyl]piperidin-4-yl]benzimidazole-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SJI "Create component" 2022-07-06 RCSB 
SJI "Initial release"  2023-01-11 RCSB 
# 
