data_S5I
# 
_chem_comp.id                                    S5I 
_chem_comp.name                                  Cerdulatinib 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H27 N7 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "4-(cyclopropylamino)-2-[[4-(4-ethylsulfonylpiperazin-1-yl)phenyl]amino]pyrimidine-5-carboxamide" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-13 
_chem_comp.pdbx_modified_date                    2023-12-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        445.538 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S5I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BX6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S5I C4  C1  C 0 1 Y N N N N N -13.389 13.084 20.006 -5.485 -0.071 -0.157 C4  S5I 1  
S5I C5  C2  C 0 1 Y N N N N N -13.810 11.843 19.629 -5.109 -1.393 0.168  C5  S5I 2  
S5I C6  C3  C 0 1 Y N N N N N -12.900 10.920 19.160 -3.770 -1.637 0.493  C6  S5I 3  
S5I N1  N1  N 0 1 Y N N N N N -11.590 11.248 19.126 -2.914 -0.633 0.484  N1  S5I 4  
S5I N3  N2  N 0 1 Y N N N N N -12.113 13.407 19.964 -4.558 0.879  -0.146 N3  S5I 5  
S5I C2  C4  C 0 1 Y N N N N N -11.233 12.506 19.496 -3.303 0.598  0.173  C2  S5I 6  
S5I CAA C5  C 0 1 N N N N N N -2.405  20.353 18.809 7.745  -0.536 -2.966 CAA S5I 7  
S5I CAB C6  C 0 1 N N N N N N -3.466  21.387 19.264 6.543  -0.283 -2.054 CAB S5I 8  
S5I CAG C7  C 0 1 N N N N N N -5.433  18.996 19.525 4.787  -1.215 0.934  CAG S5I 9  
S5I CAH C8  C 0 1 N N N N N N -5.705  17.486 19.619 3.359  -0.854 0.510  CAH S5I 10 
S5I CAJ C9  C 0 1 N N N N N N -6.942  18.147 21.770 3.870  1.516  0.526  CAJ S5I 11 
S5I CAK C10 C 0 1 N N N N N N -5.628  18.922 22.055 5.319  1.252  0.950  CAK S5I 12 
S5I CAL C11 C 0 1 Y N N N N N -7.555  16.074 20.379 1.655  0.751  0.839  CAL S5I 13 
S5I CAM C12 C 0 1 Y N N N N N -6.958  14.970 19.930 0.850  -0.161 0.170  CAM S5I 14 
S5I CAN C13 C 0 1 Y N N N N N -7.818  13.770 19.633 -0.483 0.125  -0.049 CAN S5I 15 
S5I CAO C14 C 0 1 Y N N N N N -9.113  13.910 19.749 -1.018 1.325  0.401  CAO S5I 16 
S5I CAP C15 C 0 1 Y N N N N N -9.812  15.163 20.229 -0.213 2.238  1.069  CAP S5I 17 
S5I CAQ C16 C 0 1 Y N N N N N -9.050  16.218 20.507 1.120  1.952  1.288  CAQ S5I 18 
S5I CAZ C17 C 0 1 N N N N N N -13.632 15.355 20.976 -7.191 1.617  -0.709 CAZ S5I 19 
S5I CBA C18 C 0 1 N N N N N N -13.654 16.436 19.918 -8.094 1.909  -1.909 CBA S5I 20 
S5I CBB C19 C 0 1 N N N N N N -14.517 16.574 21.202 -8.663 1.973  -0.491 CBB S5I 21 
S5I CBC C20 C 0 1 N N N N N N -15.310 11.482 19.675 -6.098 -2.483 0.165  CBC S5I 22 
S5I NAF N3  N 0 1 N N N N N N -5.137  19.571 20.834 5.682  -0.115 0.547  NAF S5I 23 
S5I NAI N4  N 0 1 N N N N N N -6.733  17.240 20.628 3.005  0.459  1.065  NAI S5I 24 
S5I NAR N5  N 0 1 N N N N N N -9.826  12.726 19.426 -2.371 1.615  0.179  NAR S5I 25 
S5I NAY N6  N 0 1 N N N N N N -14.273 14.124 20.505 -6.791 0.226  -0.486 NAY S5I 26 
S5I NBE N7  N 0 1 N N N N N N -15.651 10.123 19.466 -5.746 -3.713 0.590  NBE S5I 27 
S5I OAD O1  O 0 1 N N N N N N -3.020  20.744 21.888 7.403  -1.747 0.004  OAD S5I 28 
S5I OAE O2  O 0 1 N N N N N N -4.825  22.080 21.559 7.924  0.671  0.019  OAE S5I 29 
S5I OBD O3  O 0 1 N N N N N N -16.183 12.312 19.867 -7.233 -2.274 -0.220 OBD S5I 30 
S5I SAC S1  S 0 1 N N N N N N -4.111  20.965 20.926 7.063  -0.406 -0.321 SAC S5I 31 
S5I H6  H1  H 0 1 N N N N N N -13.230 9.948  18.824 -3.442 -2.634 0.748  H6  S5I 32 
S5I HAC H2  H 0 1 N N N N N N -2.032  20.625 17.811 7.432  -0.462 -4.008 HAC S5I 33 
S5I HAA H3  H 0 1 N N N N N N -1.569  20.347 19.524 8.517  0.207  -2.765 HAA S5I 34 
S5I HAB H4  H 0 1 N N N N N N -2.861  19.353 18.770 8.142  -1.533 -2.776 HAB S5I 35 
S5I HAD H5  H 0 1 N N N N N N -3.006  22.385 19.298 6.146  0.714  -2.244 HAD S5I 36 
S5I HAE H6  H 0 1 N N N N N N -4.298  21.391 18.544 5.771  -1.026 -2.256 HAE S5I 37 
S5I HAH H7  H 0 1 N N N N N N -4.574  19.163 18.859 4.824  -1.355 2.014  HAH S5I 38 
S5I HAG H8  H 0 1 N N N N N N -6.321  19.494 19.109 5.097  -2.133 0.433  HAG S5I 39 
S5I HAI H9  H 0 1 N N N N N N -6.052  17.114 18.644 3.301  -0.817 -0.578 HAI S5I 40 
S5I HAJ H10 H 0 1 N N N N N N -4.780  16.963 19.903 2.667  -1.607 0.886  HAJ S5I 41 
S5I HAK H11 H 0 1 N N N N N N -7.745  18.860 21.531 3.548  2.483  0.914  HAK S5I 42 
S5I HAL H12 H 0 1 N N N N N N -7.224  17.562 22.658 3.805  1.521  -0.562 HAL S5I 43 
S5I HAN H13 H 0 1 N N N N N N -4.866  18.219 22.422 5.980  1.967  0.460  HAN S5I 44 
S5I HAM H14 H 0 1 N N N N N N -5.819  19.689 22.820 5.408  1.354  2.032  HAM S5I 45 
S5I HAO H15 H 0 1 N N N N N N -5.888  14.937 19.783 1.266  -1.094 -0.180 HAO S5I 46 
S5I HAP H16 H 0 1 N N N N N N -7.381  12.828 19.335 -1.110 -0.585 -0.569 HAP S5I 47 
S5I HAQ H17 H 0 1 N N N N N N -10.886 15.200 20.341 -0.629 3.171  1.418  HAQ S5I 48 
S5I HAR H18 H 0 1 N N N N N N -9.492  17.154 20.817 1.745  2.659  1.812  HAR S5I 49 
S5I HAZ H19 H 0 1 N N N N N N -12.726 15.269 21.594 -6.448 2.369  -0.444 HAZ S5I 50 
S5I HBA H20 H 0 1 N N N N N N -12.776 17.082 19.772 -7.944 2.853  -2.434 HBA S5I 51 
S5I H6L H21 H 0 1 N N N N N N -14.136 16.248 18.947 -8.390 1.066  -2.533 H6L S5I 52 
S5I HBB H22 H 0 1 N N N N N N -14.251 17.316 21.970 -9.334 1.171  -0.181 HBB S5I 53 
S5I H6M H23 H 0 1 N N N N N N -15.612 16.481 21.145 -8.888 2.958  -0.082 H6M S5I 54 
S5I H6N H24 H 0 1 N N N N N N -9.275  11.953 19.111 -2.652 2.532  0.029  H6N S5I 55 
S5I HAY H25 H 0 1 N N N N N N -14.899 14.371 19.766 -7.444 -0.486 -0.569 HAY S5I 56 
S5I HBE H26 H 0 1 N N N N N N -16.610 9.841  19.476 -4.841 -3.879 0.897  HBE S5I 57 
S5I H6O H27 H 0 1 N N N N N N -14.932 9.446  19.309 -6.398 -4.431 0.588  H6O S5I 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S5I CAA CAB SING N N 1  
S5I N1  C6  DOUB Y N 2  
S5I N1  C2  SING Y N 3  
S5I C6  C5  SING Y N 4  
S5I CAB SAC SING N N 5  
S5I NAR C2  SING N N 6  
S5I NAR CAO SING N N 7  
S5I NBE CBC SING N N 8  
S5I C2  N3  DOUB Y N 9  
S5I CAG CAH SING N N 10 
S5I CAG NAF SING N N 11 
S5I CAH NAI SING N N 12 
S5I C5  CBC SING N N 13 
S5I C5  C4  DOUB Y N 14 
S5I CAN CAO DOUB Y N 15 
S5I CAN CAM SING Y N 16 
S5I CBC OBD DOUB N N 17 
S5I CAO CAP SING Y N 18 
S5I CBA CAZ SING N N 19 
S5I CBA CBB SING N N 20 
S5I CAM CAL DOUB Y N 21 
S5I N3  C4  SING Y N 22 
S5I C4  NAY SING N N 23 
S5I CAP CAQ DOUB Y N 24 
S5I CAL CAQ SING Y N 25 
S5I CAL NAI SING N N 26 
S5I NAY CAZ SING N N 27 
S5I NAI CAJ SING N N 28 
S5I NAF SAC SING N N 29 
S5I NAF CAK SING N N 30 
S5I SAC OAE DOUB N N 31 
S5I SAC OAD DOUB N N 32 
S5I CAZ CBB SING N N 33 
S5I CAJ CAK SING N N 34 
S5I C6  H6  SING N N 35 
S5I CAA HAC SING N N 36 
S5I CAA HAA SING N N 37 
S5I CAA HAB SING N N 38 
S5I CAB HAD SING N N 39 
S5I CAB HAE SING N N 40 
S5I CAG HAH SING N N 41 
S5I CAG HAG SING N N 42 
S5I CAH HAI SING N N 43 
S5I CAH HAJ SING N N 44 
S5I CAJ HAK SING N N 45 
S5I CAJ HAL SING N N 46 
S5I CAK HAN SING N N 47 
S5I CAK HAM SING N N 48 
S5I CAM HAO SING N N 49 
S5I CAN HAP SING N N 50 
S5I CAP HAQ SING N N 51 
S5I CAQ HAR SING N N 52 
S5I CAZ HAZ SING N N 53 
S5I CBA HBA SING N N 54 
S5I CBA H6L SING N N 55 
S5I CBB HBB SING N N 56 
S5I CBB H6M SING N N 57 
S5I NAR H6N SING N N 58 
S5I NAY HAY SING N N 59 
S5I NBE HBE SING N N 60 
S5I NBE H6O SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S5I InChI            InChI                1.06    "InChI=1S/C20H27N7O3S/c1-2-31(29,30)27-11-9-26(10-12-27)16-7-5-15(6-8-16)24-20-22-13-17(18(21)28)19(25-20)23-14-3-4-14/h5-8,13-14H,2-4,9-12H2,1H3,(H2,21,28)(H2,22,23,24,25)" 
S5I InChIKey         InChI                1.06    BGLPECHZZQDNCD-UHFFFAOYSA-N                                                                                                                                                   
S5I SMILES_CANONICAL CACTVS               3.385   "CC[S](=O)(=O)N1CCN(CC1)c2ccc(Nc3ncc(C(N)=O)c(NC4CC4)n3)cc2"                                                                                                                  
S5I SMILES           CACTVS               3.385   "CC[S](=O)(=O)N1CCN(CC1)c2ccc(Nc3ncc(C(N)=O)c(NC4CC4)n3)cc2"                                                                                                                  
S5I SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCS(=O)(=O)N1CCN(CC1)c2ccc(cc2)Nc3ncc(c(n3)NC4CC4)C(=O)N"                                                                                                                    
S5I SMILES           "OpenEye OEToolkits" 3.1.0.0 "CCS(=O)(=O)N1CCN(CC1)c2ccc(cc2)Nc3ncc(c(n3)NC4CC4)C(=O)N"                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           S5I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "4-(cyclopropylamino)-2-[[4-(4-ethylsulfonylpiperazin-1-yl)phenyl]amino]pyrimidine-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S5I "Create component" 2022-12-13 PDBE 
S5I "Initial release"  2023-12-20 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      S5I 
_pdbx_chem_comp_synonyms.name         "4-(cyclopropylamino)-2-[[4-(4-ethylsulfonylpiperazin-1-yl)phenyl]amino]pyrimidine-5-carboxamide" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
