data_R4I
# 
_chem_comp.id                                    R4I 
_chem_comp.name                                  "(8~{S})-6-[2-(2,3-dihydroindol-1-yl)-2-oxidanylidene-ethyl]-4-(4-methylphenyl)-2-oxidanylidene-8-propyl-1,5,7,8-tetrahydro-1,6-naphthyridine-3-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H30 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-23 
_chem_comp.pdbx_modified_date                    2022-12-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        466.574 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R4I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BPY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R4I C5  C1  C 0 1 N N N -55.694 22.176 -34.949 4.487  -1.075 -0.430 C5  R4I 1  
R4I C6  C2  C 0 1 N N N -56.280 22.536 -36.144 4.060  0.269  -0.289 C6  R4I 2  
R4I C7  C3  C 0 1 N N S -56.531 18.551 -34.796 1.303  -2.973 -0.735 C7  R4I 3  
R4I C8  C4  C 0 1 N N N -56.444 17.539 -35.927 -0.087 -2.492 -1.149 C8  R4I 4  
R4I C10 C5  C 0 1 N N N -57.780 19.203 -37.280 0.303  -0.210 -0.488 C10 R4I 5  
R4I C13 C6  C 0 1 N N N -59.938 17.015 -33.863 2.472  -5.055 2.286  C13 R4I 6  
R4I C15 C7  C 0 1 N N N -56.166 23.891 -36.551 5.010  1.328  -0.130 C15 R4I 7  
R4I C17 C8  C 0 1 Y N N -57.536 21.945 -38.117 2.188  1.923  -0.165 C17 R4I 8  
R4I C20 C9  C 0 1 Y N N -58.614 22.673 -40.572 1.262  4.519  0.103  C20 R4I 9  
R4I C21 C10 C 0 1 Y N N -59.362 21.951 -39.662 2.011  4.166  -1.006 C21 R4I 10 
R4I C22 C11 C 0 1 Y N N -58.828 21.587 -38.436 2.475  2.874  -1.146 C22 R4I 11 
R4I C24 C12 C 0 1 N N N -56.715 17.334 -38.285 -1.931 -1.129 -0.364 C24 R4I 12 
R4I C28 C13 C 0 1 N N N -58.919 16.520 -41.313 -4.170 1.140  1.820  C28 R4I 13 
R4I C29 C14 C 0 1 N N N -58.351 16.732 -42.696 -5.664 1.286  1.488  C29 R4I 14 
R4I C30 C15 C 0 1 Y N N -56.867 16.568 -42.452 -5.872 0.411  0.272  C30 R4I 15 
R4I C35 C16 C 0 1 Y N N -55.826 16.406 -43.338 -7.006 0.145  -0.470 C35 R4I 16 
R4I C34 C17 C 0 1 Y N N -54.534 16.278 -42.876 -6.941 -0.705 -1.558 C34 R4I 17 
R4I C33 C18 C 0 1 Y N N -54.291 16.311 -41.521 -5.736 -1.290 -1.903 C33 R4I 18 
R4I C32 C19 C 0 1 Y N N -55.336 16.470 -40.630 -4.602 -1.029 -1.164 C32 R4I 19 
R4I C31 C20 C 0 1 Y N N -56.624 16.602 -41.090 -4.660 -0.171 -0.064 C31 R4I 20 
R4I N27 N1  N 0 1 N N N -57.765 16.760 -40.450 -3.639 0.223  0.807  N27 R4I 21 
R4I C25 C21 C 0 1 N N N -57.888 17.082 -39.182 -2.356 -0.181 0.727  C25 R4I 22 
R4I O26 O1  O 0 1 N N N -59.004 17.201 -38.699 -1.543 0.220  1.533  O26 R4I 23 
R4I N9  N2  N 0 1 N N N -57.327 17.824 -37.053 -0.496 -1.413 -0.234 N9  R4I 24 
R4I C11 C22 C 0 1 N N N -57.761 18.414 -33.921 1.206  -3.715 0.600  C11 R4I 25 
R4I C12 C23 C 0 1 N N N -58.416 17.030 -34.094 2.569  -4.313 0.951  C12 R4I 26 
R4I C2  C24 C 0 1 N N N -57.042 20.274 -36.482 1.774  -0.534 -0.468 C2  R4I 27 
R4I C3  C25 C 0 1 N N N -56.450 19.954 -35.287 2.237  -1.796 -0.586 C3  R4I 28 
R4I N4  N3  N 0 1 N N N -55.783 20.877 -34.516 3.577  -2.051 -0.575 N4  R4I 29 
R4I O14 O2  O 0 1 N N N -55.097 22.989 -34.250 5.677  -1.342 -0.425 O14 R4I 30 
R4I N16 N4  N 0 1 N N N -56.075 24.972 -36.874 5.764  2.168  -0.004 N16 R4I 31 
R4I C1  C26 C 0 1 N N N -56.956 21.593 -36.908 2.683  0.536  -0.308 C1  R4I 32 
R4I C18 C27 C 0 1 Y N N -56.793 22.655 -39.037 1.438  2.287  0.954  C18 R4I 33 
R4I C19 C28 C 0 1 Y N N -57.324 23.026 -40.257 0.979  3.582  1.081  C19 R4I 34 
R4I C23 C29 C 0 1 N N N -59.198 23.079 -41.916 0.758  5.932  0.249  C23 R4I 35 
R4I H2  H2  H 0 1 N N N -55.658 18.382 -34.149 1.692  -3.648 -1.497 H2  R4I 36 
R4I H3  H3  H 0 1 N N N -56.706 16.549 -35.525 -0.055 -2.114 -2.171 H3  R4I 37 
R4I H4  H4  H 0 1 N N N -55.408 17.523 -36.296 -0.796 -3.317 -1.085 H4  R4I 38 
R4I H5  H5  H 0 1 N N N -57.655 19.430 -38.349 0.038  0.197  -1.464 H5  R4I 39 
R4I H6  H6  H 0 1 N N N -58.846 19.258 -37.016 0.087  0.532  0.281  H6  R4I 40 
R4I H7  H7  H 0 1 N N N -60.321 15.994 -34.006 1.735  -5.854 2.204  H7  R4I 41 
R4I H8  H8  H 0 1 N N N -60.156 17.348 -32.838 3.444  -5.481 2.536  H8  R4I 42 
R4I H9  H9  H 0 1 N N N -60.424 17.693 -34.580 2.169  -4.359 3.067  H9  R4I 43 
R4I H10 H10 H 0 1 N N N -60.374 21.667 -39.909 2.228  4.902  -1.766 H10 R4I 44 
R4I H11 H11 H 0 1 N N N -59.423 21.024 -37.732 3.059  2.600  -2.011 H11 R4I 45 
R4I H12 H12 H 0 1 N N N -56.153 16.406 -38.103 -2.495 -2.058 -0.277 H12 R4I 46 
R4I H13 H13 H 0 1 N N N -56.044 18.090 -38.718 -2.126 -0.676 -1.336 H13 R4I 47 
R4I H14 H14 H 0 1 N N N -59.727 17.236 -41.102 -3.672 2.107  1.753  H14 R4I 48 
R4I H15 H15 H 0 1 N N N -59.297 15.494 -41.193 -4.042 0.718  2.816  H15 R4I 49 
R4I H16 H16 H 0 1 N N N -58.585 17.738 -43.075 -6.274 0.932  2.319  H16 R4I 50 
R4I H17 H17 H 0 1 N N N -58.726 15.977 -43.403 -5.903 2.323  1.255  H17 R4I 51 
R4I H18 H18 H 0 1 N N N -56.023 16.379 -44.400 -7.946 0.603  -0.200 H18 R4I 52 
R4I H19 H19 H 0 1 N N N -53.718 16.153 -43.572 -7.828 -0.911 -2.138 H19 R4I 53 
R4I H20 H20 H 0 1 N N N -53.280 16.212 -41.153 -5.684 -1.955 -2.752 H20 R4I 54 
R4I H21 H21 H 0 1 N N N -55.139 16.491 -39.568 -3.664 -1.489 -1.438 H21 R4I 55 
R4I H23 H23 H 0 1 N N N -57.469 18.544 -32.868 0.902  -3.018 1.381  H23 R4I 56 
R4I H24 H24 H 0 1 N N N -58.487 19.192 -34.199 0.469  -4.513 0.518  H24 R4I 57 
R4I H25 H25 H 0 1 N N N -58.220 16.682 -35.119 3.307  -3.514 1.032  H25 R4I 58 
R4I H26 H26 H 0 1 N N N -57.952 16.337 -33.376 2.873  -5.009 0.169  H26 R4I 59 
R4I H27 H27 H 0 1 N N N -55.775 22.926 -38.799 1.216  1.557  1.718  H27 R4I 60 
R4I H28 H28 H 0 1 N N N -56.729 23.590 -40.959 0.395  3.865  1.944  H28 R4I 61 
R4I H29 H29 H 0 1 N N N -58.994 22.293 -42.658 1.500  6.529  0.779  H29 R4I 62 
R4I H30 H30 H 0 1 N N N -60.285 23.217 -41.817 0.586  6.360  -0.739 H30 R4I 63 
R4I H31 H31 H 0 1 N N N -58.738 24.022 -42.246 -0.176 5.928  0.811  H31 R4I 64 
R4I H1  H1  H 0 1 N N N -55.367 20.604 -33.649 3.882  -2.967 -0.674 H1  R4I 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R4I C35 C34 DOUB Y N 1  
R4I C35 C30 SING Y N 2  
R4I C34 C33 SING Y N 3  
R4I C29 C30 SING N N 4  
R4I C29 C28 SING N N 5  
R4I C30 C31 DOUB Y N 6  
R4I C23 C20 SING N N 7  
R4I C33 C32 DOUB Y N 8  
R4I C28 N27 SING N N 9  
R4I C31 C32 SING Y N 10 
R4I C31 N27 SING N N 11 
R4I C20 C19 DOUB Y N 12 
R4I C20 C21 SING Y N 13 
R4I N27 C25 SING N N 14 
R4I C19 C18 SING Y N 15 
R4I C21 C22 DOUB Y N 16 
R4I C25 O26 DOUB N N 17 
R4I C25 C24 SING N N 18 
R4I C18 C17 DOUB Y N 19 
R4I C22 C17 SING Y N 20 
R4I C24 N9  SING N N 21 
R4I C17 C1  SING N N 22 
R4I C10 N9  SING N N 23 
R4I C10 C2  SING N N 24 
R4I N9  C8  SING N N 25 
R4I C1  C2  SING N N 26 
R4I C1  C6  DOUB N N 27 
R4I N16 C15 TRIP N N 28 
R4I C15 C6  SING N N 29 
R4I C2  C3  DOUB N N 30 
R4I C6  C5  SING N N 31 
R4I C8  C7  SING N N 32 
R4I C3  C7  SING N N 33 
R4I C3  N4  SING N N 34 
R4I C5  N4  SING N N 35 
R4I C5  O14 DOUB N N 36 
R4I C7  C11 SING N N 37 
R4I C12 C11 SING N N 38 
R4I C12 C13 SING N N 39 
R4I C7  H2  SING N N 40 
R4I C8  H3  SING N N 41 
R4I C8  H4  SING N N 42 
R4I C10 H5  SING N N 43 
R4I C10 H6  SING N N 44 
R4I C13 H7  SING N N 45 
R4I C13 H8  SING N N 46 
R4I C13 H9  SING N N 47 
R4I C21 H10 SING N N 48 
R4I C22 H11 SING N N 49 
R4I C24 H12 SING N N 50 
R4I C24 H13 SING N N 51 
R4I C28 H14 SING N N 52 
R4I C28 H15 SING N N 53 
R4I C29 H16 SING N N 54 
R4I C29 H17 SING N N 55 
R4I C35 H18 SING N N 56 
R4I C34 H19 SING N N 57 
R4I C33 H20 SING N N 58 
R4I C32 H21 SING N N 59 
R4I C11 H23 SING N N 60 
R4I C11 H24 SING N N 61 
R4I C12 H25 SING N N 62 
R4I C12 H26 SING N N 63 
R4I C18 H27 SING N N 64 
R4I C19 H28 SING N N 65 
R4I C23 H29 SING N N 66 
R4I C23 H30 SING N N 67 
R4I C23 H31 SING N N 68 
R4I N4  H1  SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R4I InChI            InChI                1.06  "InChI=1S/C29H30N4O2/c1-3-6-22-16-32(18-26(34)33-14-13-20-7-4-5-8-25(20)33)17-24-27(21-11-9-19(2)10-12-21)23(15-30)29(35)31-28(22)24/h4-5,7-12,22H,3,6,13-14,16-18H2,1-2H3,(H,31,35)/t22-/m0/s1" 
R4I InChIKey         InChI                1.06  TVUOEVCKUGISBU-QFIPXVFZSA-N                                                                                                                                                                      
R4I SMILES_CANONICAL CACTVS               3.385 "CCC[C@H]1CN(CC(=O)N2CCc3ccccc23)CC4=C1NC(=O)C(=C4c5ccc(C)cc5)C#N"                                                                                                                               
R4I SMILES           CACTVS               3.385 "CCC[CH]1CN(CC(=O)N2CCc3ccccc23)CC4=C1NC(=O)C(=C4c5ccc(C)cc5)C#N"                                                                                                                                
R4I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[C@H]1CN(CC2=C1NC(=O)C(=C2c3ccc(cc3)C)C#N)CC(=O)N4CCc5c4cccc5"                                                                                                                               
R4I SMILES           "OpenEye OEToolkits" 2.0.7 "CCCC1CN(CC2=C1NC(=O)C(=C2c3ccc(cc3)C)C#N)CC(=O)N4CCc5c4cccc5"                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           R4I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(8~{S})-6-[2-(2,3-dihydroindol-1-yl)-2-oxidanylidene-ethyl]-4-(4-methylphenyl)-2-oxidanylidene-8-propyl-1,5,7,8-tetrahydro-1,6-naphthyridine-3-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R4I "Create component"     2022-11-23 PDBE 
R4I "Initial release"      2022-12-28 RCSB 
R4I "Modify aromatic_flag" 2022-12-29 PDBE 
# 
