data_OZI
# 
_chem_comp.id                                    OZI 
_chem_comp.name                                  "(2~{S})-4-(2-chloranylethanoyl)-1-(3,4-dichlorophenyl)-~{N}-(thiophen-2-ylmethyl)piperazine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H18 Cl3 N3 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        446.778 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OZI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8B56 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OZI N1  N1  N  0 1 N N N N N N -21.579 4.442 24.781 -2.630 -1.832 0.660  N1  OZI 1  
OZI N3  N2  N  0 1 N N N N N N -22.798 4.757 27.266 0.119  -1.645 1.071  N3  OZI 2  
OZI C4  C1  C  0 1 Y N N N N N -21.280 8.365 33.308 -2.068 6.080  0.260  C4  OZI 3  
OZI C5  C2  C  0 1 Y N N N N N -20.807 7.123 33.548 -1.461 6.313  -0.904 C5  OZI 4  
OZI C6  C3  C  0 1 N N S N N N -21.332 4.747 27.162 -0.598 -0.495 0.502  C6  OZI 5  
OZI C7  C4  C  0 1 N N N N N N -20.901 5.254 25.784 -2.053 -0.518 0.981  C7  OZI 6  
OZI C8  C5  C  0 1 N N N N N N -20.938 3.561 23.995 -3.798 -1.930 -0.005 C8  OZI 7  
OZI C13 C6  C  0 1 N N N N N N -23.033 4.574 24.802 -1.896 -3.036 1.079  C13 OZI 8  
OZI C15 C7  C  0 1 Y N N N N N -23.457 4.195 28.393 1.487  -1.570 0.792  C15 OZI 9  
OZI C17 C8  C  0 1 Y N N N N N -23.377 3.170 30.576 3.274  -1.342 -0.791 C17 OZI 10 
OZI C20 C9  C  0 1 Y N N N N N -24.852 4.183 28.463 2.413  -1.657 1.823  C20 OZI 11 
OZI N   N3  N  0 1 N N N N N N -21.369 6.413 28.939 -0.429 1.972  0.554  N   OZI 12 
OZI C   C10 C  0 1 N N N N N N -20.628 5.515 28.281 0.061  0.782  0.955  C   OZI 13 
OZI O   O1  O  0 1 N N N N N N -19.441 5.295 28.542 1.032  0.740  1.680  O   OZI 14 
OZI C1  C11 C  0 1 N N N N N N -20.778 7.547 29.616 0.211  3.214  0.994  C1  OZI 15 
OZI C14 C12 C  0 1 N N N N N N -23.475 5.294 26.074 -0.447 -2.914 0.596  C14 OZI 16 
OZI C16 C13 C  0 1 Y N N N N N -22.721 3.671 29.463 1.921  -1.415 -0.518 C16 OZI 17 
OZI C18 C14 C  0 1 Y N N N N N -24.758 3.143 30.627 4.195  -1.422 0.240  C18 OZI 18 
OZI C19 C15 C  0 1 Y N N N N N -25.497 3.660 29.575 3.764  -1.583 1.544  C19 OZI 19 
OZI C2  C16 C  0 1 Y N N N N N -20.917 7.590 31.114 -0.525 4.393  0.410  C2  OZI 20 
OZI C3  C17 C  0 1 Y N N N N N -21.360 8.664 31.915 -1.551 5.020  0.986  C3  OZI 21 
OZI C9  C18 C  0 1 N N N N N N -19.802 2.782 24.618 -4.369 -3.287 -0.330 C9  OZI 22 
OZI O3  O2  O  0 1 N N N N N N -21.305 3.327 22.855 -4.390 -0.927 -0.343 O3  OZI 23 
OZI S   S1  S  0 1 Y N N N N N -20.442 6.271 32.105 -0.165 5.147  -1.138 S   OZI 24 
OZI CL  CL1 CL 0 0 N N N N N N -22.433 2.637 31.940 3.819  -1.140 -2.427 CL  OZI 25 
OZI CL1 CL2 CL 0 0 N N N N N N -25.574 2.404 31.965 5.894  -1.322 -0.105 CL1 OZI 26 
OZI H6  H1  H  0 1 N N N N N N -21.567 9.057 34.086 -2.897 6.676  0.613  H6  OZI 27 
OZI H7  H2  H  0 1 N N N N N N -20.674 6.712 34.538 -1.726 7.097  -1.598 H7  OZI 28 
OZI H   H3  H  0 1 N N N N N N -21.001 3.701 27.235 -0.571 -0.553 -0.586 H   OZI 29 
OZI H9  H4  H  0 1 N N N N N N -19.811 5.155 25.672 -2.618 0.264  0.473  H9  OZI 30 
OZI H8  H5  H  0 1 N N N N N N -21.187 6.310 25.667 -2.087 -0.356 2.059  H8  OZI 31 
OZI H17 H6  H  0 1 N N N N N N -23.359 5.152 23.925 -1.915 -3.116 2.165  H17 OZI 32 
OZI H18 H7  H  0 1 N N N N N N -23.490 3.574 24.772 -2.357 -3.918 0.635  H18 OZI 33 
OZI H23 H8  H  0 1 N N N N N N -25.433 4.584 27.646 2.077  -1.782 2.842  H23 OZI 34 
OZI H2  H9  H  0 1 N N N N N N -22.362 6.297 28.964 -1.206 2.006  -0.026 H2  OZI 35 
OZI H4  H10 H  0 1 N N N N N N -19.703 7.552 29.381 0.184  3.271  2.082  H4  OZI 36 
OZI H3  H11 H  0 1 N N N N N N -21.246 8.457 29.212 1.247  3.228  0.655  H3  OZI 37 
OZI H20 H12 H  0 1 N N N N N N -23.236 6.364 25.980 -0.423 -2.938 -0.493 H20 OZI 38 
OZI H19 H13 H  0 1 N N N N N N -24.561 5.170 26.195 0.139  -3.744 0.991  H19 OZI 39 
OZI H21 H14 H  0 1 N N N N N N -21.642 3.657 29.421 1.203  -1.352 -1.322 H21 OZI 40 
OZI H22 H15 H  0 1 N N N N N N -26.576 3.656 29.620 4.484  -1.651 2.346  H22 OZI 41 
OZI H5  H16 H  0 1 N N N N N N -21.718 9.603 31.520 -1.947 4.726  1.947  H5  OZI 42 
OZI H10 H17 H  0 1 N N N N N N -19.339 3.338 25.447 -3.664 -3.838 -0.952 H10 OZI 43 
OZI H1  H18 H  0 1 N N N N N N -20.138 1.798 24.978 -4.545 -3.838 0.595  H1  OZI 44 
OZI CL3 CL3 CL 0 0 N Y N N N N ?       ?     ?      -5.926 -3.088 -1.217 CL3 OZI 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OZI O3  C8  DOUB N N 1  
OZI C8  C9  SING N N 2  
OZI C8  N1  SING N N 3  
OZI N1  C13 SING N N 4  
OZI N1  C7  SING N N 5  
OZI C13 C14 SING N N 6  
OZI C7  C6  SING N N 7  
OZI C14 N3  SING N N 8  
OZI C6  N3  SING N N 9  
OZI C6  C   SING N N 10 
OZI N3  C15 SING N N 11 
OZI C   O   DOUB N N 12 
OZI C   N   SING N N 13 
OZI C15 C20 DOUB Y N 14 
OZI C15 C16 SING Y N 15 
OZI C20 C19 SING Y N 16 
OZI N   C1  SING N N 17 
OZI C16 C17 DOUB Y N 18 
OZI C19 C18 DOUB Y N 19 
OZI C1  C2  SING N N 20 
OZI C17 C18 SING Y N 21 
OZI C17 CL  SING N N 22 
OZI C18 CL1 SING N N 23 
OZI C2  C3  DOUB Y N 24 
OZI C2  S   SING Y N 25 
OZI C3  C4  SING Y N 26 
OZI S   C5  SING Y N 27 
OZI C4  C5  DOUB Y N 28 
OZI C4  H6  SING N N 29 
OZI C5  H7  SING N N 30 
OZI C6  H   SING N N 31 
OZI C7  H9  SING N N 32 
OZI C7  H8  SING N N 33 
OZI C13 H17 SING N N 34 
OZI C13 H18 SING N N 35 
OZI C20 H23 SING N N 36 
OZI N   H2  SING N N 37 
OZI C1  H4  SING N N 38 
OZI C1  H3  SING N N 39 
OZI C14 H20 SING N N 40 
OZI C14 H19 SING N N 41 
OZI C16 H21 SING N N 42 
OZI C19 H22 SING N N 43 
OZI C3  H5  SING N N 44 
OZI C9  H10 SING N N 45 
OZI C9  H1  SING N N 46 
OZI C9  CL3 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OZI InChI            InChI                1.06    "InChI=1S/C18H18Cl3N3O2S/c19-9-17(25)23-5-6-24(12-3-4-14(20)15(21)8-12)16(11-23)18(26)22-10-13-2-1-7-27-13/h1-4,7-8,16H,5-6,9-11H2,(H,22,26)/t16-/m0/s1" 
OZI InChIKey         InChI                1.06    DBKURSLDNAKNLU-INIZCTEOSA-N                                                                                                                              
OZI SMILES_CANONICAL CACTVS               3.385   "ClCC(=O)N1CCN([C@@H](C1)C(=O)NCc2sccc2)c3ccc(Cl)c(Cl)c3"                                                                                                
OZI SMILES           CACTVS               3.385   "ClCC(=O)N1CCN([CH](C1)C(=O)NCc2sccc2)c3ccc(Cl)c(Cl)c3"                                                                                                  
OZI SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(sc1)CNC(=O)[C@@H]2CN(CCN2c3ccc(c(c3)Cl)Cl)C(=O)CCl"                                                                                                
OZI SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1cc(sc1)CNC(=O)C2CN(CCN2c3ccc(c(c3)Cl)Cl)C(=O)CCl"                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           OZI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-4-(2-chloranylethanoyl)-1-(3,4-dichlorophenyl)-~{N}-(thiophen-2-ylmethyl)piperazine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OZI "Create component"         2022-09-28 PDBE 
OZI "Other modification"       2022-09-29 PDBE 
OZI "Modify leaving atom flag" 2022-10-18 PDBE 
OZI "Initial release"          2023-08-09 RCSB 
OZI "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            OZI 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C9 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
