data_OTI
# 
_chem_comp.id                                    OTI 
_chem_comp.name                                  "3-[(8~{a}~{S})-7-[[5-ethoxycarbonyl-4-(3-fluoranyl-2-methyl-phenyl)-2-(1,3-thiazol-2-yl)-1,4-dihydropyrimidin-6-yl]methyl]-3-oxidanylidene-5,6,8,8~{a}-tetrahydro-1~{H}-imidazo[1,5-a]pyrazin-2-yl]-2,2-dimethyl-propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAD 
_chem_comp.formula                               "C29 H35 F N6 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Linvencorvir 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-10 
_chem_comp.pdbx_modified_date                    2023-03-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        598.689 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OTI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8I71 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OTI C10 C1  C 0 1 N N N 27.605 9.454  -51.210 4.330  1.087  1.219  C10 OTI 1  
OTI C11 C2  C 0 1 N N N 26.804 10.395 -53.530 6.368  -0.301 0.365  C11 OTI 2  
OTI C14 C3  C 0 1 N N N 25.162 9.758  -55.282 7.124  2.063  0.079  C14 OTI 3  
OTI C15 C4  C 0 1 N N N 25.982 8.106  -53.507 8.676  0.189  -0.399 C15 OTI 4  
OTI C18 C5  C 0 1 N N N 26.513 11.403 -46.797 -0.517 0.512  2.013  C18 OTI 5  
OTI C20 C6  C 0 1 N N N 26.412 12.725 -44.638 -2.653 -0.512 1.297  C20 OTI 6  
OTI C23 C7  C 0 1 N N N 29.111 12.096 -44.224 -3.564 1.885  0.322  C23 OTI 7  
OTI C25 C8  C 0 1 Y N N 30.480 11.714 -44.189 -4.056 3.236  -0.005 C25 OTI 8  
OTI C27 C9  C 0 1 Y N N 32.499 10.822 -44.759 -3.968 5.425  -0.335 C27 OTI 9  
OTI C28 C10 C 0 1 Y N N 32.944 11.615 -43.758 -5.271 5.289  -0.613 C28 OTI 10 
OTI C30 C11 C 0 1 Y N N 27.271 14.761 -43.469 -3.860 -1.255 -0.704 C30 OTI 11 
OTI C31 C12 C 0 1 Y N N 27.942 15.347 -44.561 -3.476 -0.608 -1.864 C31 OTI 12 
OTI C32 C13 C 0 1 Y N N 28.074 16.725 -44.720 -3.369 -1.314 -3.047 C32 OTI 13 
OTI C33 C14 C 0 1 Y N N 27.488 17.622 -43.799 -3.646 -2.668 -3.072 C33 OTI 14 
OTI C34 C15 C 0 1 Y N N 26.822 17.009 -42.736 -4.030 -3.317 -1.911 C34 OTI 15 
OTI C01 C16 C 0 1 N N S 28.245 10.126 -49.981 2.908  1.240  0.658  C01 OTI 16 
OTI C02 C17 C 0 1 N N N 27.186 10.303 -48.872 1.863  0.850  1.708  C02 OTI 17 
OTI N03 N1  N 0 1 N N N 27.524 11.234 -47.821 0.569  0.660  1.035  N03 OTI 18 
OTI C04 C18 C 0 1 N N N 27.950 12.528 -48.397 0.589  -0.469 0.097  C04 OTI 19 
OTI C05 C19 C 0 1 N N N 29.047 12.352 -49.445 1.584  -0.185 -1.039 C05 OTI 20 
OTI N06 N2  N 0 1 N N N 28.497 11.485 -50.432 2.851  0.218  -0.410 N06 OTI 21 
OTI C07 C20 C 0 1 N N N 27.929 11.680 -51.660 4.075  -0.266 -0.617 C07 OTI 22 
OTI O08 O1  O 0 1 N N N 27.938 12.796 -52.184 4.352  -1.000 -1.546 O08 OTI 23 
OTI N09 N3  N 0 1 N N N 27.386 10.548 -52.171 4.972  0.137  0.296  N09 OTI 24 
OTI C12 C21 C 0 1 N N N 25.573 9.581  -53.815 7.239  0.640  -0.470 C12 OTI 25 
OTI C13 C22 C 0 1 N N N 24.414 10.022 -52.914 6.768  0.615  -1.925 C13 OTI 26 
OTI O16 O2  O 0 1 N N N 27.017 7.681  -54.050 8.972  -0.784 0.252  O16 OTI 27 
OTI O17 O3  O 0 1 N N N 25.252 7.483  -52.699 9.626  0.870  -1.060 O17 OTI 28 
OTI C19 C23 C 0 1 N N N 27.121 12.076 -45.599 -1.844 0.566  1.302  C19 OTI 29 
OTI C21 C24 C 0 1 N N S 27.173 13.280 -43.390 -3.976 -0.483 0.585  C21 OTI 30 
OTI N22 N4  N 0 1 N N N 28.578 12.766 -43.289 -4.387 0.884  0.288  N22 OTI 31 
OTI N24 N5  N 0 1 N N N 28.461 11.732 -45.397 -2.235 1.711  0.659  N24 OTI 32 
OTI N26 N6  N 0 1 Y N N 31.122 10.893 -45.026 -3.335 4.324  -0.015 N26 OTI 33 
OTI S29 S1  S 0 1 Y N N 31.605 12.482 -43.090 -5.709 3.643  -0.454 S29 OTI 34 
OTI C35 C25 C 0 1 Y N N 26.687 15.625 -42.534 -4.142 -2.607 -0.727 C35 OTI 35 
OTI C36 C26 C 0 1 N N N 25.928 15.130 -41.305 -4.566 -3.310 0.536  C36 OTI 36 
OTI F37 F1  F 0 1 N N N 26.249 17.848 -41.835 -4.302 -4.640 -1.934 F37 OTI 37 
OTI C38 C27 C 0 1 N N N 24.982 12.956 -44.649 -2.248 -1.689 1.966  C38 OTI 38 
OTI O39 O4  O 0 1 N N N 24.235 12.708 -45.596 -2.681 -1.938 3.076  O39 OTI 39 
OTI O40 O5  O 0 1 N N N 24.434 13.505 -43.539 -1.381 -2.537 1.374  O40 OTI 40 
OTI C41 C28 C 0 1 N N N 23.082 13.886 -43.511 -1.100 -3.760 2.059  C41 OTI 41 
OTI C42 C29 C 0 1 N N N 22.972 15.325 -43.913 -0.024 -4.536 1.296  C42 OTI 42 
OTI H1  H1  H 0 1 N N N 26.650 8.981  -50.938 4.851  2.044  1.207  H1  OTI 43 
OTI H2  H2  H 0 1 N N N 28.282 8.697  -51.633 4.300  0.681  2.231  H2  OTI 44 
OTI H3  H3  H 0 1 N N N 27.602 9.963  -54.152 6.704  -0.283 1.402  H3  OTI 45 
OTI H4  H4  H 0 1 N N N 26.579 11.414 -53.878 6.451  -1.315 -0.026 H4  OTI 46 
OTI H5  H5  H 0 1 N N N 24.261 9.161  -55.486 7.459  2.081  1.116  H5  OTI 47 
OTI H6  H6  H 0 1 N N N 24.950 10.819 -55.478 7.744  2.734  -0.515 H6  OTI 48 
OTI H7  H7  H 0 1 N N N 25.980 9.421  -55.935 6.085  2.389  0.029  H7  OTI 49 
OTI H8  H8  H 0 1 N N N 25.694 12.023 -47.189 -0.417 -0.445 2.525  H8  OTI 50 
OTI H9  H9  H 0 1 N N N 26.120 10.418 -46.504 -0.462 1.321  2.742  H9  OTI 51 
OTI H10 H10 H 0 1 N N N 33.160 10.176 -45.317 -3.470 6.383  -0.372 H10 OTI 52 
OTI H11 H11 H 0 1 N N N 33.970 11.694 -43.429 -5.938 6.091  -0.892 H11 OTI 53 
OTI H12 H12 H 0 1 N N N 28.374 14.698 -45.309 -3.260 0.450  -1.846 H12 OTI 54 
OTI H13 H13 H 0 1 N N N 28.632 17.113 -45.559 -3.069 -0.808 -3.953 H13 OTI 55 
OTI H14 H14 H 0 1 N N N 27.550 18.695 -43.908 -3.563 -3.220 -3.997 H14 OTI 56 
OTI H15 H15 H 0 1 N N N 29.142 9.597  -49.628 2.734  2.247  0.278  H15 OTI 57 
OTI H16 H16 H 0 1 N N N 26.257 10.652 -49.346 2.162  -0.078 2.195  H16 OTI 58 
OTI H17 H17 H 0 1 N N N 27.015 9.320  -48.409 1.776  1.644  2.450  H17 OTI 59 
OTI H19 H19 H 0 1 N N N 28.331 13.169 -47.588 0.890  -1.373 0.625  H19 OTI 60 
OTI H20 H20 H 0 1 N N N 27.081 13.010 -48.869 -0.408 -0.609 -0.322 H20 OTI 61 
OTI H21 H21 H 0 1 N N N 29.942 11.900 -48.992 1.734  -1.085 -1.635 H21 OTI 62 
OTI H22 H22 H 0 1 N N N 29.312 13.322 -49.891 1.208  0.621  -1.670 H22 OTI 63 
OTI H23 H23 H 0 1 N N N 24.701 9.898  -51.859 7.388  1.285  -2.520 H23 OTI 64 
OTI H24 H24 H 0 1 N N N 24.180 11.079 -53.108 6.850  -0.399 -2.316 H24 OTI 65 
OTI H25 H25 H 0 1 N N N 23.528 9.405  -53.128 5.729  0.940  -1.976 H25 OTI 66 
OTI H26 H26 H 0 1 N N N 25.609 6.615  -52.554 10.533 0.543  -0.984 H26 OTI 67 
OTI H27 H27 H 0 1 N N N 26.628 15.009 -40.465 -5.644 -3.211 0.663  H27 OTI 68 
OTI H28 H28 H 0 1 N N N 25.153 15.862 -41.034 -4.304 -4.366 0.470  H28 OTI 69 
OTI H29 H29 H 0 1 N N N 25.456 14.162 -41.531 -4.057 -2.863 1.390  H29 OTI 70 
OTI H30 H30 H 0 1 N N N 22.683 13.756 -42.494 -0.744 -3.539 3.065  H30 OTI 71 
OTI H31 H31 H 0 1 N N N 22.509 13.262 -44.213 -2.008 -4.360 2.118  H31 OTI 72 
OTI H32 H32 H 0 1 N N N 21.916 15.632 -43.894 0.910  -3.974 1.312  H32 OTI 73 
OTI H33 H33 H 0 1 N N N 23.547 15.947 -43.211 0.127  -5.506 1.768  H33 OTI 74 
OTI H34 H34 H 0 1 N N N 23.373 15.453 -44.929 -0.343 -4.680 0.264  H34 OTI 75 
OTI H18 H18 H 0 1 N N N 26.615 12.996 -42.486 -4.731 -0.953 1.216  H18 OTI 76 
OTI H35 H35 H 0 1 N N N 28.955 11.221 -46.101 -1.583 2.395  0.441  H35 OTI 77 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OTI C14 C12 SING N N 1  
OTI O16 C15 DOUB N N 2  
OTI C12 C11 SING N N 3  
OTI C12 C15 SING N N 4  
OTI C12 C13 SING N N 5  
OTI C11 N09 SING N N 6  
OTI C15 O17 SING N N 7  
OTI O08 C07 DOUB N N 8  
OTI N09 C07 SING N N 9  
OTI N09 C10 SING N N 10 
OTI C07 N06 SING N N 11 
OTI C10 C01 SING N N 12 
OTI N06 C01 SING N N 13 
OTI N06 C05 SING N N 14 
OTI C01 C02 SING N N 15 
OTI C05 C04 SING N N 16 
OTI C02 N03 SING N N 17 
OTI C04 N03 SING N N 18 
OTI N03 C18 SING N N 19 
OTI C18 C19 SING N N 20 
OTI C19 N24 SING N N 21 
OTI C19 C20 DOUB N N 22 
OTI O39 C38 DOUB N N 23 
OTI N24 C23 SING N N 24 
OTI N26 C27 SING Y N 25 
OTI N26 C25 DOUB Y N 26 
OTI C27 C28 DOUB Y N 27 
OTI C32 C31 DOUB Y N 28 
OTI C32 C33 SING Y N 29 
OTI C38 C20 SING N N 30 
OTI C38 O40 SING N N 31 
OTI C20 C21 SING N N 32 
OTI C31 C30 SING Y N 33 
OTI C23 C25 SING N N 34 
OTI C23 N22 DOUB N N 35 
OTI C25 S29 SING Y N 36 
OTI C42 C41 SING N N 37 
OTI C33 C34 DOUB Y N 38 
OTI C28 S29 SING Y N 39 
OTI O40 C41 SING N N 40 
OTI C30 C21 SING N N 41 
OTI C30 C35 DOUB Y N 42 
OTI C21 N22 SING N N 43 
OTI C34 C35 SING Y N 44 
OTI C34 F37 SING N N 45 
OTI C35 C36 SING N N 46 
OTI C10 H1  SING N N 47 
OTI C10 H2  SING N N 48 
OTI C11 H3  SING N N 49 
OTI C11 H4  SING N N 50 
OTI C14 H5  SING N N 51 
OTI C14 H6  SING N N 52 
OTI C14 H7  SING N N 53 
OTI C18 H8  SING N N 54 
OTI C18 H9  SING N N 55 
OTI C27 H10 SING N N 56 
OTI C28 H11 SING N N 57 
OTI C31 H12 SING N N 58 
OTI C32 H13 SING N N 59 
OTI C33 H14 SING N N 60 
OTI C01 H15 SING N N 61 
OTI C02 H16 SING N N 62 
OTI C02 H17 SING N N 63 
OTI C04 H19 SING N N 64 
OTI C04 H20 SING N N 65 
OTI C05 H21 SING N N 66 
OTI C05 H22 SING N N 67 
OTI C13 H23 SING N N 68 
OTI C13 H24 SING N N 69 
OTI C13 H25 SING N N 70 
OTI O17 H26 SING N N 71 
OTI C36 H27 SING N N 72 
OTI C36 H28 SING N N 73 
OTI C36 H29 SING N N 74 
OTI C41 H30 SING N N 75 
OTI C41 H31 SING N N 76 
OTI C42 H32 SING N N 77 
OTI C42 H33 SING N N 78 
OTI C42 H34 SING N N 79 
OTI C21 H18 SING N N 80 
OTI N24 H35 SING N N 81 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OTI InChI            InChI                1.06  "InChI=1S/C29H35FN6O5S/c1-5-41-26(37)22-21(15-34-10-11-36-18(13-34)14-35(28(36)40)16-29(3,4)27(38)39)32-24(25-31-9-12-42-25)33-23(22)19-7-6-8-20(30)17(19)2/h6-9,12,18,23H,5,10-11,13-16H2,1-4H3,(H,32,33)(H,38,39)/t18-,23?/m0/s1" 
OTI InChIKey         InChI                1.06  YLJBFYZGSKMBEZ-XNUZUHMRSA-N                                                                                                                                                                                                         
OTI SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)C1=C(CN2CCN3[C@@H](C2)CN(CC(C)(C)C(O)=O)C3=O)NC(=N[C@H]1c4cccc(F)c4C)c5sccn5"                                                                                                                                              
OTI SMILES           CACTVS               3.385 "CCOC(=O)C1=C(CN2CCN3[CH](C2)CN(CC(C)(C)C(O)=O)C3=O)NC(=N[CH]1c4cccc(F)c4C)c5sccn5"                                                                                                                                                 
OTI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)C1=C(NC(=NC1c2cccc(c2C)F)c3nccs3)CN4CCN5[C@@H](C4)CN(C5=O)CC(C)(C)C(=O)O"                                                                                                                                                  
OTI SMILES           "OpenEye OEToolkits" 2.0.7 "CCOC(=O)C1=C(NC(=NC1c2cccc(c2C)F)c3nccs3)CN4CCN5C(C4)CN(C5=O)CC(C)(C)C(=O)O"                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           OTI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[(8~{a}~{S})-7-[[5-ethoxycarbonyl-4-(3-fluoranyl-2-methyl-phenyl)-2-(1,3-thiazol-2-yl)-1,4-dihydropyrimidin-6-yl]methyl]-3-oxidanylidene-5,6,8,8~{a}-tetrahydro-1~{H}-imidazo[1,5-a]pyrazin-2-yl]-2,2-dimethyl-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OTI "Create component" 2023-02-10 PDBJ 
OTI "Initial release"  2023-03-22 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      OTI 
_pdbx_chem_comp_synonyms.name         Linvencorvir 
_pdbx_chem_comp_synonyms.provenance   PUBCHEM 
_pdbx_chem_comp_synonyms.type         ? 
# 
