data_NZI
# 
_chem_comp.id                                    NZI 
_chem_comp.name                                  "[(2~{R},3~{S},5~{R})-3-oxidanyl-5-(2-oxidanylidene-3~{H}-benzimidazol-1-yl)oxolan-2-yl]methyl [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H17 N2 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-09-11 
_chem_comp.pdbx_modified_date                    2017-11-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        490.190 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NZI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5OXJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NZI N   N1  N 0 1 N N N 19.129 -19.134 -6.971  -4.665 0.302  -0.100 N   NZI 1  
NZI C   C1  C 0 1 N N S 18.394 -20.667 -10.255 -3.179 -2.923 0.744  C   NZI 2  
NZI O   O1  O 0 1 N N N 18.951 -21.968 -10.447 -3.234 -3.777 1.888  O   NZI 3  
NZI C1  C2  C 0 1 N N N 17.984 -20.435 -8.805  -4.443 -2.036 0.669  C1  NZI 4  
NZI C10 C3  C 0 1 Y N N 20.004 -15.240 -5.855  -7.173 3.529  0.544  C10 NZI 5  
NZI C11 C4  C 0 1 Y N N 19.695 -16.240 -4.941  -6.863 3.028  -0.705 C11 NZI 6  
NZI C2  C5  C 0 1 N N R 19.272 -19.940 -8.179  -3.896 -0.595 0.767  C2  NZI 7  
NZI C3  C6  C 0 1 N N R 19.476 -19.608 -10.486 -2.019 -1.912 0.879  C3  NZI 8  
NZI C4  C7  C 0 1 N N N 19.025 -18.424 -11.299 -0.798 -2.395 0.095  C4  NZI 9  
NZI C5  C8  C 0 1 N N N 18.925 -19.699 -5.703  -4.719 0.244  -1.444 C5  NZI 10 
NZI C6  C9  C 0 1 Y N N 19.404 -17.510 -5.424  -6.011 1.940  -0.820 C6  NZI 11 
NZI C7  C10 C 0 1 Y N N 19.426 -17.772 -6.791  -5.469 1.356  0.327  C7  NZI 12 
NZI C8  C11 C 0 1 Y N N 19.729 -16.773 -7.704  -5.786 1.866  1.577  C8  NZI 13 
NZI C9  C12 C 0 1 Y N N 20.020 -15.504 -7.221  -6.636 2.950  1.682  C9  NZI 14 
NZI N1  N2  N 0 1 N N N 19.084 -18.698 -4.783  -5.522 1.220  -1.908 N1  NZI 15 
NZI O1  O2  O 0 1 N N N 19.903 -19.163 -9.177  -2.530 -0.686 0.310  O1  NZI 16 
NZI O10 O3  O 0 1 N N N 18.335 -12.644 -12.636 6.278  2.820  1.754  O10 NZI 17 
NZI O11 O4  O 0 1 N N N 16.441 -12.512 -14.307 7.305  0.518  1.008  O11 NZI 18 
NZI O12 O5  O 0 1 N N N 18.672 -20.879 -5.480  -4.131 -0.567 -2.134 O12 NZI 19 
NZI O2  O6  O 0 1 N N N 20.066 -17.427 -11.315 0.299  -1.508 0.326  O2  NZI 20 
NZI O3  O7  O 0 1 N N N 20.555 -15.181 -10.282 2.410  -3.071 0.213  O3  NZI 21 
NZI O4  O8  O 0 1 N N N 20.315 -15.353 -12.767 1.605  -1.800 -1.814 O4  NZI 22 
NZI O5  O9  O 0 1 N N N 18.277 -15.587 -11.252 2.693  -0.463 0.031  O5  NZI 23 
NZI O6  O10 O 0 1 N N N 15.842 -16.223 -11.094 3.668  1.051  -1.885 O6  NZI 24 
NZI O7  O11 O 0 1 N N N 17.193 -17.009 -13.067 4.936  -0.953 -1.020 O7  NZI 25 
NZI O8  O12 O 0 1 N N N 16.616 -14.506 -12.752 4.784  1.061  0.495  O8  NZI 26 
NZI O9  O13 O 0 1 N N N 18.292 -14.191 -14.566 6.657  2.277  -0.682 O9  NZI 27 
NZI P   P1  P 0 1 N N N 19.837 -15.844 -11.456 1.748  -1.712 -0.343 P   NZI 28 
NZI P1  P2  P 0 1 N N N 16.962 -15.915 -12.091 4.040  0.150  -0.604 P1  NZI 29 
NZI P2  P3  P 0 1 N N N 17.405 -13.413 -13.605 6.265  1.682  0.615  P2  NZI 30 
NZI H   H1  H 0 1 N N N 17.540 -20.488 -10.925 -3.071 -3.512 -0.166 H   NZI 31 
NZI H3  H2  H 0 1 N N N 19.194 -22.077 -11.359 -3.981 -4.392 1.885  H3  NZI 32 
NZI H4  H3  H 0 1 N N N 17.189 -19.678 -8.732  -4.958 -2.186 -0.280 H4  NZI 33 
NZI H5  H4  H 0 1 N N N 17.645 -21.369 -8.333  -5.109 -2.250 1.504  H5  NZI 34 
NZI H15 H5  H 0 1 N N N 20.234 -14.246 -5.501  -7.836 4.377  0.635  H15 NZI 35 
NZI H16 H6  H 0 1 N N N 19.681 -16.035 -3.881  -7.283 3.483  -1.590 H16 NZI 36 
NZI H1  H7  H 0 1 N N N 19.897 -20.815 -7.948  -3.931 -0.246 1.799  H1  NZI 37 
NZI H2  H8  H 0 1 N N N 20.321 -20.086 -11.002 -1.762 -1.766 1.929  H2  NZI 38 
NZI H7  H9  H 0 1 N N N 18.810 -18.747 -12.329 -0.529 -3.399 0.424  H7  NZI 39 
NZI H6  H10 H 0 1 N N N 18.115 -17.997 -10.851 -1.033 -2.412 -0.969 H6  NZI 40 
NZI H13 H11 H 0 1 N N N 19.738 -16.977 -8.765  -5.370 1.417  2.466  H13 NZI 41 
NZI H14 H12 H 0 1 N N N 20.262 -14.712 -7.914  -6.883 3.347  2.655  H14 NZI 42 
NZI H12 H13 H 0 1 N N N 18.984 -18.807 -3.794  -5.726 1.392  -2.840 H12 NZI 43 
NZI H17 H15 H 0 1 N N N 16.560 -12.591 -15.246 7.109  0.083  1.849  H17 NZI 44 
NZI H8  H21 H 0 1 N N N 21.193 -14.559 -10.611 2.534  -3.084 1.172  H8  NZI 45 
NZI H9  H22 H 0 1 N N N 15.481 -17.082 -11.278 3.082  1.794  -1.687 H9  NZI 46 
NZI H11 H24 H 0 1 N N N 19.241 -12.827 -12.854 7.140  3.239  1.881  H11 NZI 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NZI N   C2  SING N N 1  
NZI N   C5  SING N N 2  
NZI N   C7  SING N N 3  
NZI C   O   SING N N 4  
NZI C   C1  SING N N 5  
NZI C   C3  SING N N 6  
NZI C1  C2  SING N N 7  
NZI C10 C11 DOUB Y N 8  
NZI C10 C9  SING Y N 9  
NZI C11 C6  SING Y N 10 
NZI C2  O1  SING N N 11 
NZI C3  C4  SING N N 12 
NZI C3  O1  SING N N 13 
NZI C4  O2  SING N N 14 
NZI C5  N1  SING N N 15 
NZI C5  O12 DOUB N N 16 
NZI C6  C7  DOUB Y N 17 
NZI C6  N1  SING N N 18 
NZI C7  C8  SING Y N 19 
NZI C8  C9  DOUB Y N 20 
NZI O10 P2  SING N N 21 
NZI O11 P2  SING N N 22 
NZI O2  P   SING N N 23 
NZI O3  P   SING N N 24 
NZI O4  P   DOUB N N 25 
NZI O5  P   SING N N 26 
NZI O5  P1  SING N N 27 
NZI O6  P1  SING N N 28 
NZI O7  P1  DOUB N N 29 
NZI O8  P1  SING N N 30 
NZI O8  P2  SING N N 31 
NZI O9  P2  DOUB N N 32 
NZI C   H   SING N N 33 
NZI O   H3  SING N N 34 
NZI C1  H4  SING N N 35 
NZI C1  H5  SING N N 36 
NZI C10 H15 SING N N 37 
NZI C11 H16 SING N N 38 
NZI C2  H1  SING N N 39 
NZI C3  H2  SING N N 40 
NZI C4  H7  SING N N 41 
NZI C4  H6  SING N N 42 
NZI C8  H13 SING N N 43 
NZI C9  H14 SING N N 44 
NZI N1  H12 SING N N 45 
NZI O10 H11 SING N N 46 
NZI O11 H17 SING N N 47 
NZI O3  H8  SING N N 48 
NZI O6  H9  SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NZI InChI            InChI                1.03  "InChI=1S/C12H17N2O13P3/c15-9-5-11(14-8-4-2-1-3-7(8)13-12(14)16)25-10(9)6-24-29(20,21)27-30(22,23)26-28(17,18)19/h1-4,9-11,15H,5-6H2,(H,13,16)(H,20,21)(H,22,23)(H2,17,18,19)/t9-,10+,11+/m0/s1" 
NZI InChIKey         InChI                1.03  OMCWLYQAPHJDBD-HBNTYKKESA-N                                                                                                                                                                      
NZI SMILES_CANONICAL CACTVS               3.385 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C(=O)Nc3ccccc23"                                                                                                                   
NZI SMILES           CACTVS               3.385 "O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C(=O)Nc3ccccc23"                                                                                                                        
NZI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)NC(=O)N2[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"                                                                                                                      
NZI SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)NC(=O)N2C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NZI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},5~{R})-3-oxidanyl-5-(2-oxidanylidene-3~{H}-benzimidazol-1-yl)oxolan-2-yl]methyl [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NZI "Create component" 2017-09-11 EBI  
NZI "Initial release"  2017-11-29 RCSB 
# 
