data_NDI
# 
_chem_comp.id                                    NDI 
_chem_comp.name                                  "2-(4-acetylpiperazin-1-yl)-N-(4-methylpyridin-3-yl)acetamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H20 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-16 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        276.334 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NDI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GEB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NDI N1  N1  N 0 1 N N N N N N 11.285 -0.943 22.589 -1.403 0.618  0.505  N1  NDI 1  
NDI N3  N2  N 0 1 Y N N N N N 7.215  0.485  17.277 4.381  -1.797 0.809  N3  NDI 2  
NDI C4  C1  C 0 1 N N N N N N 9.870  -1.149 22.290 -0.188 1.422  0.314  C4  NDI 3  
NDI C5  C2  C 0 1 N N N N N N 9.404  -0.368 21.072 1.009  0.510  0.226  C5  NDI 4  
NDI C6  C3  C 0 1 Y N N N N N 7.421  -0.045 19.613 3.363  0.196  0.085  C6  NDI 5  
NDI C7  C4  C 0 1 Y N N N N N 7.839  -0.129 18.285 3.325  -1.008 0.775  C7  NDI 6  
NDI C8  C5  C 0 1 Y N N N N N 6.130  1.205  17.574 5.505  -1.480 0.197  C8  NDI 7  
NDI C10 C6  C 0 1 Y N N N N N 6.270  0.713  19.911 4.535  0.561  -0.573 C10 NDI 8  
NDI C13 C7  C 0 1 N N N N N N 12.977 -0.457 24.325 -3.751 0.589  1.199  C13 NDI 9  
NDI O1  O1  O 0 1 N N N N N N 10.124 0.476  20.544 0.864  -0.691 0.313  O1  NDI 10 
NDI N2  N3  N 0 1 N N N N N N 8.149  -0.668 20.659 2.240  1.030  0.050  N2  NDI 11 
NDI C11 C8  C 0 1 N N N N N N 5.744  0.854  21.315 4.621  1.859  -1.334 C11 NDI 12 
NDI C9  C9  C 0 1 Y N N N N N 5.627  1.340  18.852 5.620  -0.298 -0.511 C9  NDI 13 
NDI C3  C10 C 0 1 N N N N N N 12.065 -2.120 22.183 -1.674 -0.214 -0.675 C3  NDI 14 
NDI C2  C11 C 0 1 N N N N N N 13.549 -1.914 22.459 -2.836 -1.165 -0.370 C2  NDI 15 
NDI C12 C12 C 0 1 N N N N N N 11.493 -0.671 24.024 -2.553 1.471  0.831  C12 NDI 16 
NDI N   N4  N 0 1 N N N N N N 13.753 -1.623 23.879 -3.978 -0.370 0.106  N   NDI 17 
NDI C1  C13 C 0 1 N N N N N N 14.503 -2.419 24.677 -5.200 -0.516 -0.443 C1  NDI 18 
NDI O   O2  O 0 1 N N N N N N 15.614 -2.080 25.030 -5.390 -1.372 -1.281 O   NDI 19 
NDI C   C14 C 0 1 N N N N N N 13.929 -3.729 25.105 -6.331 0.385  -0.017 C   NDI 20 
NDI H2  H2  H 0 1 N N N N N N 9.277  -0.830 23.160 -0.275 1.998  -0.607 H2  NDI 21 
NDI H3  H3  H 0 1 N N N N N N 9.702  -2.220 22.105 -0.066 2.101  1.158  H3  NDI 22 
NDI H4  H4  H 0 1 N N N N N N 8.713  -0.722 18.060 2.421  -1.302 1.289  H4  NDI 23 
NDI H5  H5  H 0 1 N N N N N N 5.617  1.710  16.769 6.347  -2.154 0.250  H5  NDI 24 
NDI H6  H6  H 0 1 N N N N N N 13.113 -0.321 25.408 -3.539 0.049  2.121  H6  NDI 25 
NDI H7  H7  H 0 1 N N N N N N 13.331 0.440  23.796 -4.636 1.211  1.333  H7  NDI 26 
NDI H8  H8  H 0 1 N N N N N N 7.685  -1.409 21.144 2.347  1.982  -0.101 H8  NDI 27 
NDI H9  H9  H 0 1 N N N N N N 5.025  0.048  21.520 4.970  2.648  -0.669 H9  NDI 28 
NDI H10 H10 H 0 1 N N N N N N 6.580  0.790  22.028 5.319  1.748  -2.164 H10 NDI 29 
NDI H11 H11 H 0 1 N N N N N N 5.244  1.828  21.423 3.635  2.119  -1.721 H11 NDI 30 
NDI H12 H12 H 0 1 N N N N N N 4.739  1.929  19.027 6.545  -0.047 -1.008 H12 NDI 31 
NDI H13 H13 H 0 1 N N N N N N 11.920 -2.294 21.106 -1.939 0.425  -1.518 H13 NDI 32 
NDI H14 H14 H 0 1 N N N N N N 11.713 -2.997 22.746 -0.785 -0.794 -0.924 H14 NDI 33 
NDI H15 H15 H 0 1 N N N N N N 14.101 -2.827 22.190 -3.117 -1.703 -1.275 H15 NDI 34 
NDI H16 H16 H 0 1 N N N N N N 13.919 -1.071 21.857 -2.536 -1.873 0.402  H16 NDI 35 
NDI H17 H17 H 0 1 N N N N N N 10.934 0.234  24.305 -2.302 2.113  1.675  H17 NDI 36 
NDI H18 H18 H 0 1 N N N N N N 11.125 -1.526 24.610 -2.806 2.087  -0.032 H18 NDI 37 
NDI H19 H19 H 0 1 N N N N N N 14.655 -4.258 25.740 -5.998 1.023  0.802  H19 NDI 38 
NDI H20 H20 H 0 1 N N N N N N 13.003 -3.555 25.673 -6.638 1.006  -0.859 H20 NDI 39 
NDI H21 H21 H 0 1 N N N N N N 13.705 -4.339 24.217 -7.173 -0.221 0.314  H21 NDI 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NDI N3  C8  DOUB Y N 1  
NDI N3  C7  SING Y N 2  
NDI C8  C9  SING Y N 3  
NDI C7  C6  DOUB Y N 4  
NDI C9  C10 DOUB Y N 5  
NDI C6  C10 SING Y N 6  
NDI C6  N2  SING N N 7  
NDI C10 C11 SING N N 8  
NDI O1  C5  DOUB N N 9  
NDI N2  C5  SING N N 10 
NDI C5  C4  SING N N 11 
NDI C3  C2  SING N N 12 
NDI C3  N1  SING N N 13 
NDI C4  N1  SING N N 14 
NDI C2  N   SING N N 15 
NDI N1  C12 SING N N 16 
NDI N   C13 SING N N 17 
NDI N   C1  SING N N 18 
NDI C12 C13 SING N N 19 
NDI C1  O   DOUB N N 20 
NDI C1  C   SING N N 21 
NDI C4  H2  SING N N 22 
NDI C4  H3  SING N N 23 
NDI C7  H4  SING N N 24 
NDI C8  H5  SING N N 25 
NDI C13 H6  SING N N 26 
NDI C13 H7  SING N N 27 
NDI N2  H8  SING N N 28 
NDI C11 H9  SING N N 29 
NDI C11 H10 SING N N 30 
NDI C11 H11 SING N N 31 
NDI C9  H12 SING N N 32 
NDI C3  H13 SING N N 33 
NDI C3  H14 SING N N 34 
NDI C2  H15 SING N N 35 
NDI C2  H16 SING N N 36 
NDI C12 H17 SING N N 37 
NDI C12 H18 SING N N 38 
NDI C   H19 SING N N 39 
NDI C   H20 SING N N 40 
NDI C   H21 SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NDI SMILES           ACDLabs              12.01 "O=C(CN1CCN(CC1)C(C)=O)Nc1cnccc1C"                                                                               
NDI InChI            InChI                1.06  "InChI=1S/C14H20N4O2/c1-11-3-4-15-9-13(11)16-14(20)10-17-5-7-18(8-6-17)12(2)19/h3-4,9H,5-8,10H2,1-2H3,(H,16,20)" 
NDI InChIKey         InChI                1.06  YHXAYSKGSZLMHI-UHFFFAOYSA-N                                                                                      
NDI SMILES_CANONICAL CACTVS               3.385 "CC(=O)N1CCN(CC1)CC(=O)Nc2cnccc2C"                                                                               
NDI SMILES           CACTVS               3.385 "CC(=O)N1CCN(CC1)CC(=O)Nc2cnccc2C"                                                                               
NDI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccncc1NC(=O)CN2CCN(CC2)C(=O)C"                                                                               
NDI SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1ccncc1NC(=O)CN2CCN(CC2)C(=O)C"                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NDI "SYSTEMATIC NAME" ACDLabs              12.01 "2-(4-acetylpiperazin-1-yl)-N-(4-methylpyridin-3-yl)acetamide"       
NDI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-(4-ethanoylpiperazin-1-yl)-~{N}-(4-methylpyridin-3-yl)ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NDI "Create component" 2023-08-16 RCSB 
NDI "Initial release"  2023-11-08 RCSB 
# 
