data_LXI
# 
_chem_comp.id                                    LXI 
_chem_comp.name                                  "5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(sulfanyl)phosphoryl]guanosine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H17 N8 O6 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-09 
_chem_comp.pdbx_modified_date                    2023-03-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        444.363 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LXI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7U87 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LXI N1  N9  N 0 1 Y N N 14.111 9.462  41.609 -2.624 0.178  -0.275 N1  LXI 1  
LXI C1  C8  C 0 1 Y N N 14.102 8.140  41.821 -2.373 1.078  -1.270 C1  LXI 2  
LXI N2  N7  N 0 1 Y N N 12.873 7.693  41.602 -3.421 1.823  -1.465 N2  LXI 3  
LXI C2  C5  C 0 1 Y N N 12.127 8.752  41.260 -4.404 1.448  -0.611 C2  LXI 4  
LXI C3  C6  C 0 1 N N N 10.823 8.810  40.950 -5.727 1.890  -0.377 C3  LXI 5  
LXI N3  N1  N 0 1 N N N 10.291 10.079 40.631 -6.450 1.270  0.583  N3  LXI 6  
LXI C4  C2  C 0 1 N N N 11.147 11.194 40.642 -5.907 0.246  1.300  C4  LXI 7  
LXI N4  N3  N 0 1 N N N 12.455 11.078 40.936 -4.679 -0.173 1.092  N4  LXI 8  
LXI C5  C4  C 0 1 Y N N 12.897 9.851  41.253 -3.906 0.387  0.155  C5  LXI 9  
LXI O1  O6  O 0 1 N N N 10.116 7.770  40.963 -6.203 2.807  -1.023 O1  LXI 10 
LXI N5  N2  N 0 1 N N N 10.628 12.345 40.337 -6.665 -0.364 2.268  N5  LXI 11 
LXI C6  C1* C 0 1 N N R 15.170 10.486 41.637 -1.693 -0.832 0.235  C6  LXI 12 
LXI O2  O4* O 0 1 N N N 16.510 9.882  41.746 -0.329 -0.438 -0.029 O2  LXI 13 
LXI C7  C2* C 0 1 N N R 14.983 11.435 42.747 -1.874 -2.164 -0.528 C7  LXI 14 
LXI O3  O2* O 0 1 N N N 14.755 12.635 42.086 -2.693 -3.063 0.221  O3  LXI 15 
LXI C8  C3* C 0 1 N N S 16.320 11.436 43.507 -0.438 -2.719 -0.658 C8  LXI 16 
LXI O4  O3* O 0 1 N N N 17.041 12.609 43.114 -0.327 -3.980 0.004  O4  LXI 17 
LXI C9  C4* C 0 1 N N R 17.125 10.161 43.051 0.440  -1.658 0.042  C9  LXI 18 
LXI C10 C5* C 0 1 N N N 17.147 8.935  44.052 1.769  -1.493 -0.699 C10 LXI 19 
LXI O5  O5* O 0 1 N N N 16.586 7.701  43.473 2.582  -0.540 -0.012 O5  LXI 20 
LXI P1  P6* P 0 1 N N R 15.734 6.400  44.354 4.053  -0.119 -0.513 P1  LXI 21 
LXI S1  S7* S 0 1 N N N 14.270 7.496  45.136 3.926  0.712  -2.459 S1  LXI 22 
LXI O6  O8* O 0 1 N N N 16.737 6.489  45.511 4.925  -1.315 -0.543 O6  LXI 23 
LXI N6  N10 N 0 1 Y N N 15.027 4.893  43.484 4.684  0.991  0.516  N6  LXI 24 
LXI C11 C11 C 0 1 Y N N 13.928 4.278  43.972 4.644  2.359  0.369  C11 LXI 25 
LXI C12 C12 C 0 1 Y N N 13.610 3.207  43.226 5.275  2.886  1.432  C12 LXI 26 
LXI N7  N13 N 0 1 Y N N 14.500 3.112  42.245 5.695  1.878  2.216  N7  LXI 27 
LXI C13 C14 C 0 1 Y N N 15.352 4.135  42.414 5.342  0.735  1.679  C13 LXI 28 
LXI N8  N15 N 0 1 N N N 16.381 4.353  41.600 5.601  -0.521 2.203  N8  LXI 29 
LXI H1  H1  H 0 1 N N N 14.950 7.541  42.119 -1.443 1.159  -1.813 H1  LXI 30 
LXI H2  H2  H 0 1 N N N 9.323  10.182 40.402 -7.359 1.556  0.762  H2  LXI 31 
LXI H3  H3  H 0 1 N N N 11.203 13.163 40.318 -7.573 -0.065 2.434  H3  LXI 32 
LXI H4  H4  H 0 1 N N N 9.654  12.413 40.121 -6.292 -1.094 2.787  H4  LXI 33 
LXI H5  H5  H 0 1 N N N 15.125 11.050 40.694 -1.845 -0.982 1.304  H5  LXI 34 
LXI H6  H6  H 0 1 N N N 14.155 11.137 43.407 -2.304 -1.984 -1.513 H6  LXI 35 
LXI H7  H7  H 0 1 N N N 14.619 13.327 42.723 -2.839 -3.915 -0.212 H7  LXI 36 
LXI H8  H8  H 0 1 N N N 16.146 11.402 44.593 -0.158 -2.814 -1.707 H8  LXI 37 
LXI H9  H9  H 0 1 N N N 17.874 12.636 43.569 -0.903 -4.667 -0.359 H9  LXI 38 
LXI H10 H10 H 0 1 N N N 18.168 10.471 42.890 0.616  -1.936 1.081  H10 LXI 39 
LXI H11 H11 H 0 1 N N N 18.190 8.741  44.344 2.286  -2.453 -0.735 H11 LXI 40 
LXI H12 H12 H 0 1 N N N 16.560 9.201  44.943 1.578  -1.144 -1.714 H12 LXI 41 
LXI H13 H13 H 0 1 N N N 14.768 7.828  46.290 3.017  1.692  -2.310 H13 LXI 42 
LXI H14 H14 H 0 1 N N N 13.379 4.603  44.844 4.191  2.905  -0.445 H14 LXI 43 
LXI H15 H15 H 0 1 N N N 12.777 2.540  43.394 5.420  3.939  1.624  H15 LXI 44 
LXI H16 H16 H 0 1 N N N 16.395 3.653  40.886 6.161  -0.612 2.990  H16 LXI 45 
LXI H17 H17 H 0 1 N N N 16.288 5.256  41.180 5.223  -1.309 1.783  H17 LXI 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LXI N5  C4  SING N N 1  
LXI N3  C4  SING N N 2  
LXI N3  C3  SING N N 3  
LXI C4  N4  DOUB N N 4  
LXI N4  C5  SING N N 5  
LXI C3  O1  DOUB N N 6  
LXI C3  C2  SING N N 7  
LXI C5  C2  DOUB Y N 8  
LXI C5  N1  SING Y N 9  
LXI C2  N2  SING Y N 10 
LXI N8  C13 SING N N 11 
LXI N2  C1  DOUB Y N 12 
LXI N1  C6  SING N N 13 
LXI N1  C1  SING Y N 14 
LXI C6  O2  SING N N 15 
LXI C6  C7  SING N N 16 
LXI O2  C9  SING N N 17 
LXI O3  C7  SING N N 18 
LXI N7  C13 DOUB Y N 19 
LXI N7  C12 SING Y N 20 
LXI C13 N6  SING Y N 21 
LXI C7  C8  SING N N 22 
LXI C9  C8  SING N N 23 
LXI C9  C10 SING N N 24 
LXI O4  C8  SING N N 25 
LXI C12 C11 DOUB Y N 26 
LXI O5  C10 SING N N 27 
LXI O5  P1  SING N N 28 
LXI N6  C11 SING Y N 29 
LXI N6  P1  SING N N 30 
LXI P1  S1  SING N N 31 
LXI P1  O6  DOUB N N 32 
LXI C1  H1  SING N N 33 
LXI N3  H2  SING N N 34 
LXI N5  H3  SING N N 35 
LXI N5  H4  SING N N 36 
LXI C6  H5  SING N N 37 
LXI C7  H6  SING N N 38 
LXI O3  H7  SING N N 39 
LXI C8  H8  SING N N 40 
LXI O4  H9  SING N N 41 
LXI C9  H10 SING N N 42 
LXI C10 H11 SING N N 43 
LXI C10 H12 SING N N 44 
LXI S1  H13 SING N N 45 
LXI C11 H14 SING N N 46 
LXI C12 H15 SING N N 47 
LXI N8  H16 SING N N 48 
LXI N8  H17 SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LXI SMILES           ACDLabs              12.01 "Nc1nccn1P(=O)(S)OCC1OC(n2cnc3c2N=C(N)NC3=O)C(O)C1O"                                                                                                                                                     
LXI InChI            InChI                1.03  "InChI=1S/C13H17N8O6PS/c14-12-18-9-6(10(24)19-12)17-4-20(9)11-8(23)7(22)5(27-11)3-26-28(25,29)21-2-1-16-13(21)15/h1-2,4-5,7-8,11,22-23H,3H2,(H2,15,16)(H,25,29)(H3,14,18,19,24)/t5-,7-,8-,11-,28-/m1/s1" 
LXI InChIKey         InChI                1.03  KURJQYGWAXZKPO-RMPAVHDKSA-N                                                                                                                                                                              
LXI SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@](S)(=O)n4ccnc4N)[C@@H](O)[C@H]3O"                                                                                                                              
LXI SMILES           CACTVS               3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](S)(=O)n4ccnc4N)[CH](O)[CH]3O"                                                                                                                                     
LXI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cn(c(n1)N)[P@@](=O)(OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3N=C(NC4=O)N)O)O)S"                                                                                                                         
LXI SMILES           "OpenEye OEToolkits" 2.0.7 "c1cn(c(n1)N)P(=O)(OCC2C(C(C(O2)n3cnc4c3N=C(NC4=O)N)O)O)S"                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LXI "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(sulfanyl)phosphoryl]guanosine"                                                                               
LXI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[[(2-azanylimidazol-1-yl)-sulfanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]-1~{H}-purin-6-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LXI "Create component" 2022-03-09 RCSB 
LXI "Initial release"  2023-03-15 RCSB 
# 
