data_LFI
# 
_chem_comp.id                                    LFI 
_chem_comp.name                                  "1-[3,5-bis(3-bromanylpropanoyl)-1,3,5-triazinan-1-yl]-3-bromanyl-propan-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H18 Br3 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Chemical crosslinker" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        492.002 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LFI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AAA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LFI C10 C1  C  0 1 N N N N N N -29.528 57.526 -3.138 3.349  -2.911 -0.583 C10 LFI 1  
LFI C11 C2  C  0 1 N N N N N N -32.514 58.869 3.201  1.337  3.443  0.125  C11 LFI 2  
LFI C12 C3  C  0 1 N N N N N N -31.314 63.142 -0.262 -5.190 -0.990 -0.655 C12 LFI 3  
LFI C1  C4  C  0 1 N N N N N N -33.427 59.940 -2.962 -1.027 -2.338 1.603  C1  LFI 4  
LFI C2  C5  C  0 1 N N N N N N -34.341 61.026 -0.997 -1.785 0.058  1.870  C2  LFI 5  
LFI C3  C6  C  0 1 N N N N N N -33.941 58.637 -1.031 0.680  -0.497 1.891  C3  LFI 6  
LFI C4  C7  C  0 1 N N N N N N -31.691 58.235 -2.135 1.191  -2.498 0.567  C4  LFI 7  
LFI C5  C8  C  0 1 N N N N N N -33.694 59.874 1.192  -0.124 1.655  1.030  C5  LFI 8  
LFI C6  C9  C  0 1 N N N N N N -32.423 62.157 -2.331 -3.082 -1.536 0.531  C6  LFI 9  
LFI C7  C10 C  0 1 N N N N N N -32.314 63.363 -1.402 -4.075 -0.441 0.237  C7  LFI 10 
LFI C8  C11 C  0 1 N N N N N N -30.676 58.525 -3.237 2.562  -1.934 0.293  C8  LFI 11 
LFI C9  C12 C  0 1 N N N N N N -33.307 58.591 1.931  1.303  2.040  0.736  C9  LFI 12 
LFI N1  N1  N  0 1 N N N N N N -32.978 58.869 -2.093 0.317  -1.805 1.323  N1  LFI 13 
LFI N2  N2  N  0 1 N N N N N N -33.401 61.126 -2.116 -2.008 -1.282 1.304  N2  LFI 14 
LFI N3  N3  N  0 1 N N N N N N -34.018 59.840 -0.211 -0.399 0.454  1.575  N3  LFI 15 
LFI O1  O1  O  0 1 N N N N N N -31.714 62.029 -3.264 -3.250 -2.647 0.072  O1  LFI 16 
LFI O2  O2  O  0 1 N N N N N N -31.460 57.439 -1.298 0.875  -3.575 0.108  O2  LFI 17 
LFI O3  O3  O  0 1 N N N N N N -33.754 60.915 1.755  -1.025 2.426  0.777  O3  LFI 18 
LFI H1  H1  H  0 1 N N N N N N -29.087 57.429 -2.135 3.446  -3.866 -0.065 H1  LFI 19 
LFI H2  H2  H  0 1 N N N N N N -29.751 56.526 -3.539 2.822  -3.060 -1.525 H2  LFI 20 
LFI H4  H4  H  0 1 N N N N N N -33.179 59.397 3.901  0.761  3.451  -0.800 H4  LFI 21 
LFI H5  H5  H  0 1 N N N N N N -32.223 57.900 3.632  0.906  4.156  0.828  H5  LFI 22 
LFI H7  H7  H  0 1 N N N N N N -30.949 64.126 0.066  -4.762 -1.353 -1.590 H7  LFI 23 
LFI H8  H8  H  0 1 N N N N N N -31.846 62.653 0.567  -5.694 -1.810 -0.144 H8  LFI 24 
LFI H10 H10 H  0 1 N N N N N N -34.446 59.744 -3.327 -1.217 -3.207 0.974  H10 LFI 25 
LFI H11 H11 H  0 1 N N N N N N -32.747 60.058 -3.819 -1.099 -2.621 2.654  H11 LFI 26 
LFI H12 H12 H  0 1 N N N N N N -34.258 61.922 -0.364 -2.476 0.769  1.416  H12 LFI 27 
LFI H13 H13 H  0 1 N N N N N N -35.368 60.944 -1.384 -1.939 0.032  2.949  H13 LFI 28 
LFI H14 H14 H  0 1 N N N N N N -34.928 58.419 -1.465 0.791  -0.582 2.972  H14 LFI 29 
LFI H15 H15 H  0 1 N N N N N N -33.616 57.786 -0.414 1.616  -0.151 1.451  H15 LFI 30 
LFI H16 H16 H  0 1 N N N N N N -31.989 64.233 -1.991 -3.570 0.378  -0.275 H16 LFI 31 
LFI H17 H17 H  0 1 N N N N N N -33.305 63.563 -0.968 -4.503 -0.078 1.171  H17 LFI 32 
LFI H18 H18 H  0 1 N N N N N N -30.286 59.547 -3.118 3.089  -1.785 1.235  H18 LFI 33 
LFI H19 H19 H  0 1 N N N N N N -31.162 58.430 -4.219 2.465  -0.980 -0.224 H19 LFI 34 
LFI H20 H20 H  0 1 N N N N N N -34.225 58.048 2.200  1.734  1.328  0.033  H20 LFI 35 
LFI H21 H21 H  0 1 N N N N N N -32.695 57.969 1.262  1.880  2.033  1.661  H21 LFI 36 
LFI BR1 BR1 BR 0 0 N Y N N N N -28.655 58.563 -4.217 5.137  -2.176 -0.941 BR1 LFI 37 
LFI BR2 BR2 BR 0 0 N Y N N N N -29.908 62.146 -0.675 -6.485 0.439  -1.039 BR2 LFI 38 
LFI BR3 BR3 BR 0 0 N Y N N N N -30.998 59.870 3.015  3.198  3.946  -0.259 BR3 LFI 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LFI O1  C6  DOUB N N 1  
LFI C8  C10 SING N N 2  
LFI C8  C4  SING N N 3  
LFI C1  N2  SING N N 4  
LFI C1  N1  SING N N 5  
LFI C6  N2  SING N N 6  
LFI C6  C7  SING N N 7  
LFI C4  N1  SING N N 8  
LFI C4  O2  DOUB N N 9  
LFI N2  C2  SING N N 10 
LFI N1  C3  SING N N 11 
LFI C7  C12 SING N N 12 
LFI C3  N3  SING N N 13 
LFI C2  N3  SING N N 14 
LFI N3  C5  SING N N 15 
LFI C5  O3  DOUB N N 16 
LFI C5  C9  SING N N 17 
LFI C9  C11 SING N N 18 
LFI C10 H1  SING N N 19 
LFI C10 H2  SING N N 20 
LFI C11 H4  SING N N 21 
LFI C11 H5  SING N N 22 
LFI C12 H7  SING N N 23 
LFI C12 H8  SING N N 24 
LFI C1  H10 SING N N 25 
LFI C1  H11 SING N N 26 
LFI C2  H12 SING N N 27 
LFI C2  H13 SING N N 28 
LFI C3  H14 SING N N 29 
LFI C3  H15 SING N N 30 
LFI C7  H16 SING N N 31 
LFI C7  H17 SING N N 32 
LFI C8  H18 SING N N 33 
LFI C8  H19 SING N N 34 
LFI C9  H20 SING N N 35 
LFI C9  H21 SING N N 36 
LFI C10 BR1 SING N N 37 
LFI C12 BR2 SING N N 38 
LFI C11 BR3 SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LFI InChI            InChI                1.06  "InChI=1S/C12H18Br3N3O3/c13-4-1-10(19)16-7-17(11(20)2-5-14)9-18(8-16)12(21)3-6-15/h1-9H2" 
LFI InChIKey         InChI                1.06  UYNTZRFVDTZUQI-UHFFFAOYSA-N                                                               
LFI SMILES_CANONICAL CACTVS               3.385 "BrCCC(=O)N1CN(CN(C1)C(=O)CCBr)C(=O)CCBr"                                                 
LFI SMILES           CACTVS               3.385 "BrCCC(=O)N1CN(CN(C1)C(=O)CCBr)C(=O)CCBr"                                                 
LFI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1N(CN(CN1C(=O)CCBr)C(=O)CCBr)C(=O)CCBr"                                                 
LFI SMILES           "OpenEye OEToolkits" 2.0.7 "C1N(CN(CN1C(=O)CCBr)C(=O)CCBr)C(=O)CCBr"                                                 
# 
_pdbx_chem_comp_identifier.comp_id           LFI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[3,5-bis(3-bromanylpropanoyl)-1,3,5-triazinan-1-yl]-3-bromanyl-propan-1-one" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      LFI 
_pdbx_chem_comp_synonyms.name         "Chemical crosslinker" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LFI "Create component"  2022-07-01 PDBE 
LFI "Modify descriptor" 2022-08-22 RCSB 
LFI "Initial release"   2023-09-20 RCSB 
LFI "Modify PCM"        2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 LFI CYS None Crosslinker "Amino-acid side chain" "Any position" C10 SG ? ? 
2 LFI CYS None Crosslinker "Amino-acid side chain" "Any position" C11 SG ? ? 
3 LFI CYS None Crosslinker "Amino-acid side chain" "Any position" C12 SG ? ? 
# 
