data_KYI
# 
_chem_comp.id                                    KYI 
_chem_comp.name                                  "5-(2-phenylphenyl)-1H-pyrimidine-2,4-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H12 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-07 
_chem_comp.pdbx_modified_date                    2023-09-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        264.279 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KYI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8A34 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KYI C10 C1  C 0 1 Y N N 1.239  -7.557  17.881 1.788  0.340  -0.027 C10 KYI 1  
KYI C13 C2  C 0 1 Y N N 2.322  -7.798  14.329 0.136  -2.839 1.111  C13 KYI 2  
KYI C15 C3  C 0 1 Y N N 4.012  -8.766  15.737 1.786  -3.383 -0.543 C15 KYI 3  
KYI C17 C4  C 0 1 Y N N 1.857  -6.835  18.915 3.117  0.749  0.036  C17 KYI 4  
KYI C20 C5  C 0 1 Y N N -0.798 -7.623  19.194 1.113  2.640  -0.344 C20 KYI 5  
KYI C01 C6  C 0 1 N N N -0.821 -8.723  17.058 -0.643 0.872  -0.288 C01 KYI 6  
KYI C02 C7  C 0 1 N N N -0.328 -9.923  16.575 -1.554 1.105  0.841  C02 KYI 7  
KYI O03 O1  O 0 1 N N N 0.688  -10.395 17.003 -1.160 1.651  1.855  O03 KYI 8  
KYI N04 N1  N 0 1 N N N -0.978 -10.583 15.639 -2.838 0.703  0.730  N04 KYI 9  
KYI C05 C8  C 0 1 N N N -2.119 -10.146 15.113 -3.266 0.101  -0.394 C05 KYI 10 
KYI O06 O2  O 0 1 N N N -2.675 -10.789 14.273 -4.425 -0.257 -0.467 O06 KYI 11 
KYI N07 N2  N 0 1 N N N -2.633 -8.993  15.576 -2.447 -0.121 -1.435 N07 KYI 12 
KYI C08 C9  C 0 1 N N N -2.006 -8.259  16.518 -1.137 0.262  -1.403 C08 KYI 13 
KYI C09 C10 C 0 1 Y N N -0.120 -7.973  18.033 0.775  1.294  -0.219 C09 KYI 14 
KYI C11 C11 C 0 1 Y N N 2.025  -7.836  16.742 1.444  -1.096 0.102  C11 KYI 15 
KYI C12 C12 C 0 1 Y N N 1.556  -7.500  15.459 0.452  -1.501 0.995  C12 KYI 16 
KYI C14 C13 C 0 1 Y N N 3.545  -8.425  14.473 0.801  -3.779 0.344  C14 KYI 17 
KYI C16 C14 C 0 1 Y N N 3.241  -8.484  16.857 2.111  -2.048 -0.668 C16 KYI 18 
KYI C18 C15 C 0 1 Y N N 1.147  -6.484  20.058 3.433  2.087  -0.090 C18 KYI 19 
KYI C19 C16 C 0 1 Y N N -0.168 -6.887  20.192 2.435  3.028  -0.279 C19 KYI 20 
KYI H1  H1  H 0 1 N N N 1.959  -7.539  13.345 -0.629 -3.154 1.806  H1  KYI 21 
KYI H2  H2  H 0 1 N N N 4.972  -9.249  15.848 2.302  -4.121 -1.139 H2  KYI 22 
KYI H3  H3  H 0 1 N N N 2.894  -6.549  18.821 3.900  0.021  0.184  H3  KYI 23 
KYI H4  H4  H 0 1 N N N -1.827 -7.926  19.323 0.340  3.379  -0.493 H4  KYI 24 
KYI H6  H6  H 0 1 N N N -0.598 -11.448 15.310 -3.454 0.848  1.465  H6  KYI 25 
KYI H7  H7  H 0 1 N N N -2.425 -7.319  16.847 -0.495 0.075  -2.251 H7  KYI 26 
KYI H8  H8  H 0 1 N N N 0.600  -7.010  15.347 -0.068 -0.768 1.594  H8  KYI 27 
KYI H9  H9  H 0 1 N N N 4.140  -8.651  13.600 0.551  -4.825 0.439  H9  KYI 28 
KYI H10 H10 H 0 1 N N N 3.597  -8.776  17.834 2.880  -1.740 -1.361 H10 KYI 29 
KYI H11 H11 H 0 1 N N N 1.620  -5.901  20.835 4.465  2.401  -0.041 H11 KYI 30 
KYI H12 H12 H 0 1 N N N -0.715 -6.626  21.086 2.694  4.072  -0.377 H12 KYI 31 
KYI H5  H5  H 0 1 N N N -3.506 -8.670  15.211 -2.796 -0.558 -2.228 H5  KYI 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KYI O06 C05 DOUB N N 1  
KYI C13 C14 DOUB Y N 2  
KYI C13 C12 SING Y N 3  
KYI C14 C15 SING Y N 4  
KYI C05 N07 SING N N 5  
KYI C05 N04 SING N N 6  
KYI C12 C11 DOUB Y N 7  
KYI N07 C08 SING N N 8  
KYI N04 C02 SING N N 9  
KYI C15 C16 DOUB Y N 10 
KYI C08 C01 DOUB N N 11 
KYI C02 O03 DOUB N N 12 
KYI C02 C01 SING N N 13 
KYI C11 C16 SING Y N 14 
KYI C11 C10 SING N N 15 
KYI C01 C09 SING N N 16 
KYI C10 C09 DOUB Y N 17 
KYI C10 C17 SING Y N 18 
KYI C09 C20 SING Y N 19 
KYI C17 C18 DOUB Y N 20 
KYI C20 C19 DOUB Y N 21 
KYI C18 C19 SING Y N 22 
KYI C13 H1  SING N N 23 
KYI C15 H2  SING N N 24 
KYI C17 H3  SING N N 25 
KYI C20 H4  SING N N 26 
KYI N04 H6  SING N N 27 
KYI C08 H7  SING N N 28 
KYI C12 H8  SING N N 29 
KYI C14 H9  SING N N 30 
KYI C16 H10 SING N N 31 
KYI C18 H11 SING N N 32 
KYI C19 H12 SING N N 33 
KYI N07 H5  SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KYI InChI            InChI                1.06  "InChI=1S/C16H12N2O2/c19-15-14(10-17-16(20)18-15)13-9-5-4-8-12(13)11-6-2-1-3-7-11/h1-10H,(H2,17,18,19,20)" 
KYI InChIKey         InChI                1.06  KRZFUPKUAGIREV-UHFFFAOYSA-N                                                                                
KYI SMILES_CANONICAL CACTVS               3.385 "O=C1NC=C(C(=O)N1)c2ccccc2c3ccccc3"                                                                        
KYI SMILES           CACTVS               3.385 "O=C1NC=C(C(=O)N1)c2ccccc2c3ccccc3"                                                                        
KYI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccccc2C3=CNC(=O)NC3=O"                                                                        
KYI SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccccc2C3=CNC(=O)NC3=O"                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           KYI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "5-(2-phenylphenyl)-1~{H}-pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KYI "Create component"     2022-06-07 PDBE 
KYI "Modify aromatic_flag" 2022-06-17 PDBE 
KYI "Modify descriptor"    2022-08-22 RCSB 
KYI "Initial release"      2023-09-27 RCSB 
# 
