data_JTI
# 
_chem_comp.id                                    JTI 
_chem_comp.name                                  "2-[4-[(2~{S})-3-[[6-chloranyl-1-(2-methoxyethyl)benzimidazol-2-yl]amino]-2-oxidanyl-propoxy]phenyl]ethanenitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H23 Cl N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-09 
_chem_comp.pdbx_modified_date                    2024-01-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        414.885 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JTI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8Q5K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JTI C1  C1  C  0 1 N N N N N N -52.599 -1.768 7.707  4.114  4.844  -1.634 C1  JTI 1  
JTI C2  C2  C  0 1 N N N N N N -51.801 0.422  7.904  3.753  2.663  -0.709 C2  JTI 2  
JTI O3  O1  O  0 1 N N N N N N -55.078 -2.321 11.460 -3.874 0.987  0.480  O3  JTI 3  
JTI C4  C3  C  0 1 Y N N N N N -53.732 1.719  10.514 2.165  -0.085 0.279  C4  JTI 4  
JTI C6  C4  C  0 1 N N S N N N -56.658 -0.546 10.956 -1.463 0.825  0.522  C6  JTI 5  
JTI C7  C5  C  0 1 N N N N N N -56.001 -1.826 10.480 -2.786 0.064  0.404  C7  JTI 6  
JTI C9  C6  C  0 1 Y N N N N N -54.323 -4.066 9.941  -6.231 1.309  0.457  C9  JTI 7  
JTI C12 C7  C  0 1 N N N N N N -52.322 -7.236 10.625 -9.071 -1.157 0.130  C12 JTI 8  
JTI O1  O2  O  0 1 N N N N N N -52.271 -0.712 8.587  4.031  4.042  -0.455 O1  JTI 9  
JTI C3  C8  C  0 1 N N N N N N -52.745 1.564  8.152  3.687  1.904  0.618  C3  JTI 10 
JTI N1  N1  N  0 1 Y N N N N N -52.778 1.978  9.557  3.401  0.490  0.358  N1  JTI 11 
JTI N2  N2  N  0 1 N N N N N N -54.835 0.977  10.275 0.969  0.585  0.429  N2  JTI 12 
JTI C5  C9  C  0 1 N N N N N N -55.638 0.491  11.384 -0.297 -0.144 0.316  C5  JTI 13 
JTI O2  O3  O  0 1 N N N N N N -57.530 -0.795 12.044 -1.368 1.417  1.819  O2  JTI 14 
JTI C8  C10 C  0 1 Y N N N N N -54.424 -3.503 11.208 -5.128 0.470  0.391  C8  JTI 15 
JTI C10 C11 C  0 1 Y N N N N N -53.649 -5.264 9.768  -7.505 0.780  0.372  C10 JTI 16 
JTI C11 C12 C  0 1 Y N N N N N -53.055 -5.924 10.831 -7.681 -0.583 0.222  C11 JTI 17 
JTI C13 C13 C  0 1 N N N N N N -51.108 -7.367 11.422 -9.494 -1.195 -1.279 C13 JTI 18 
JTI N3  N3  N  0 1 N N N N N N -50.160 -7.490 12.066 -9.820 -1.225 -2.367 N3  JTI 19 
JTI C14 C14 C  0 1 Y N N N N N -53.165 -5.347 12.088 -6.583 -1.421 0.156  C14 JTI 20 
JTI C15 C15 C  0 1 Y N N N N N -53.834 -4.149 12.283 -5.307 -0.897 0.234  C15 JTI 21 
JTI N4  N4  N  0 1 Y N N N N N -53.459 2.265  11.685 2.285  -1.366 0.035  N4  JTI 22 
JTI C16 C16 C  0 1 Y N N N N N -52.253 2.928  11.486 3.602  -1.692 -0.058 C16 JTI 23 
JTI C17 C17 C  0 1 Y N N N N N -51.487 3.678  12.377 4.279  -2.889 -0.301 C17 JTI 24 
JTI C18 C18 C  0 1 Y N N N N N -50.315 4.242  11.923 5.656  -2.901 -0.336 C18 JTI 25 
JTI C19 C19 C  0 1 Y N N N N N -49.918 4.058  10.607 6.376  -1.732 -0.133 C19 JTI 26 
JTI CL1 CL1 CL 0 0 N N N N N N -48.419 4.763  10.067 8.110  -1.768 -0.182 CL1 JTI 27 
JTI C20 C20 C  0 1 Y N N N N N -50.651 3.314  9.702  5.720  -0.541 0.108  C20 JTI 28 
JTI C21 C21 C  0 1 Y N N N N N -51.829 2.752  10.170 4.335  -0.511 0.146  C21 JTI 29 
JTI H1  H1  H  0 1 N N N N N N -52.961 -2.630 8.287  4.912  4.468  -2.275 H1  JTI 30 
JTI H2  H2  H  0 1 N N N N N N -53.386 -1.436 7.014  3.167  4.801  -2.171 H2  JTI 31 
JTI H3  H3  H  0 1 N N N N N N -51.706 -2.060 7.135  4.328  5.877  -1.357 H3  JTI 32 
JTI H4  H4  H  0 1 N N N N N N -51.753 0.210  6.826  2.797  2.575  -1.226 H4  JTI 33 
JTI H5  H5  H  0 1 N N N N N N -50.798 0.685  8.271  4.543  2.241  -1.330 H5  JTI 34 
JTI H6  H6  H  0 1 N N N N N N -57.234 -0.128 10.117 -1.425 1.606  -0.238 H6  JTI 35 
JTI H7  H7  H  0 1 N N N N N N -56.777 -2.584 10.301 -2.863 -0.657 1.218  H7  JTI 36 
JTI H8  H8  H  0 1 N N N N N N -55.460 -1.627 9.543  -2.819 -0.460 -0.551 H8  JTI 37 
JTI H9  H9  H  0 1 N N N N N N -54.770 -3.570 9.092  -6.095 2.373  0.580  H9  JTI 38 
JTI H10 H10 H  0 1 N N N N N N -53.002 -8.058 10.892 -9.075 -2.167 0.538  H10 JTI 39 
JTI H11 H11 H  0 1 N N N N N N -52.049 -7.317 9.562  -9.760 -0.533 0.699  H11 JTI 40 
JTI H12 H12 H  0 1 N N N N N N -52.428 2.421  7.540  4.642  1.992  1.135  H12 JTI 41 
JTI H13 H13 H  0 1 N N N N N N -53.757 1.255  7.853  2.897  2.326  1.239  H13 JTI 42 
JTI H14 H14 H  0 1 N N N N N N -55.439 1.533  9.703  0.965  1.538  0.608  H14 JTI 43 
JTI H15 H15 H  0 1 N N N N N N -54.969 0.040  12.132 -0.336 -0.925 1.076  H15 JTI 44 
JTI H16 H16 H  0 1 N N N N N N -56.169 1.343  11.834 -0.370 -0.595 -0.673 H16 JTI 45 
JTI H17 H17 H  0 1 N N N N N N -57.929 0.021  12.324 -1.395 0.779  2.545  H17 JTI 46 
JTI H18 H18 H  0 1 N N N N N N -53.585 -5.694 8.779  -8.364 1.432  0.424  H18 JTI 47 
JTI H19 H19 H  0 1 N N N N N N -52.718 -5.844 12.936 -6.722 -2.485 0.038  H19 JTI 48 
JTI H20 H20 H  0 1 N N N N N N -53.896 -3.719 13.272 -4.450 -1.551 0.182  H20 JTI 49 
JTI H21 H21 H  0 1 N N N N N N -51.805 3.814  13.400 3.725  -3.802 -0.459 H21 JTI 50 
JTI H22 H22 H  0 1 N N N N N N -49.704 4.829  12.593 6.179  -3.827 -0.524 H22 JTI 51 
JTI H23 H23 H  0 1 N N N N N N -50.323 3.177  8.682  6.286  0.366  0.264  H23 JTI 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JTI C1  O1  SING N N 1  
JTI C2  C3  SING N N 2  
JTI C2  O1  SING N N 3  
JTI C3  N1  SING N N 4  
JTI N1  C21 SING Y N 5  
JTI N1  C4  SING Y N 6  
JTI C20 C21 DOUB Y N 7  
JTI C20 C19 SING Y N 8  
JTI C10 C9  DOUB Y N 9  
JTI C10 C11 SING Y N 10 
JTI C9  C8  SING Y N 11 
JTI CL1 C19 SING N N 12 
JTI C21 C16 SING Y N 13 
JTI N2  C4  SING N N 14 
JTI N2  C5  SING N N 15 
JTI C7  C6  SING N N 16 
JTI C7  O3  SING N N 17 
JTI C4  N4  DOUB Y N 18 
JTI C19 C18 DOUB Y N 19 
JTI C12 C11 SING N N 20 
JTI C12 C13 SING N N 21 
JTI C11 C14 DOUB Y N 22 
JTI C6  C5  SING N N 23 
JTI C6  O2  SING N N 24 
JTI C8  O3  SING N N 25 
JTI C8  C15 DOUB Y N 26 
JTI C13 N3  TRIP N N 27 
JTI C16 N4  SING Y N 28 
JTI C16 C17 DOUB Y N 29 
JTI C18 C17 SING Y N 30 
JTI C14 C15 SING Y N 31 
JTI C1  H1  SING N N 32 
JTI C1  H2  SING N N 33 
JTI C1  H3  SING N N 34 
JTI C2  H4  SING N N 35 
JTI C2  H5  SING N N 36 
JTI C6  H6  SING N N 37 
JTI C7  H7  SING N N 38 
JTI C7  H8  SING N N 39 
JTI C9  H9  SING N N 40 
JTI C12 H10 SING N N 41 
JTI C12 H11 SING N N 42 
JTI C3  H12 SING N N 43 
JTI C3  H13 SING N N 44 
JTI N2  H14 SING N N 45 
JTI C5  H15 SING N N 46 
JTI C5  H16 SING N N 47 
JTI O2  H17 SING N N 48 
JTI C10 H18 SING N N 49 
JTI C14 H19 SING N N 50 
JTI C15 H20 SING N N 51 
JTI C17 H21 SING N N 52 
JTI C18 H22 SING N N 53 
JTI C20 H23 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JTI InChI            InChI                1.06  "InChI=1S/C21H23ClN4O3/c1-28-11-10-26-20-12-16(22)4-7-19(20)25-21(26)24-13-17(27)14-29-18-5-2-15(3-6-18)8-9-23/h2-7,12,17,27H,8,10-11,13-14H2,1H3,(H,24,25)/t17-/m0/s1" 
JTI InChIKey         InChI                1.06  MZCRDZUXHLAMCH-KRWDZBQOSA-N                                                                                                                                             
JTI SMILES_CANONICAL CACTVS               3.385 "COCCn1c(NC[C@H](O)COc2ccc(CC#N)cc2)nc3ccc(Cl)cc13"                                                                                                                     
JTI SMILES           CACTVS               3.385 "COCCn1c(NC[CH](O)COc2ccc(CC#N)cc2)nc3ccc(Cl)cc13"                                                                                                                      
JTI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COCCn1c2cc(ccc2nc1NC[C@@H](COc3ccc(cc3)CC#N)O)Cl"                                                                                                                      
JTI SMILES           "OpenEye OEToolkits" 2.0.7 "COCCn1c2cc(ccc2nc1NCC(COc3ccc(cc3)CC#N)O)Cl"                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           JTI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[4-[(2~{S})-3-[[6-chloranyl-1-(2-methoxyethyl)benzimidazol-2-yl]amino]-2-oxidanyl-propoxy]phenyl]ethanenitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JTI "Create component" 2023-08-09 PDBE 
JTI "Initial release"  2024-01-17 RCSB 
# 
