data_JMI
# 
_chem_comp.id                                    JMI 
_chem_comp.name                                  "~{N}-[2-[4-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxyphenyl]ethyl]ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H23 N O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-23 
_chem_comp.pdbx_modified_date                    2022-09-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        341.356 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JMI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7YTQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JMI C4  C1  C 0 1 N N S -31.836 -5.233  -13.414 4.081  1.161  0.321  C4  JMI 1  
JMI C5  C2  C 0 1 N N R -32.394 -6.495  -14.060 2.591  1.299  -0.005 C5  JMI 2  
JMI C6  C3  C 0 1 N N N -32.689 -6.211  -15.527 2.302  2.727  -0.472 C6  JMI 3  
JMI C3  C4  C 0 1 N N S -31.519 -5.513  -11.983 4.374  -0.286 0.729  C3  JMI 4  
JMI C1  C5  C 0 1 N N R -31.118 -7.896  -12.602 2.453  -0.992 -0.699 C1  JMI 5  
JMI C2  C6  C 0 1 N N S -30.535 -6.668  -11.898 3.937  -1.223 -0.401 C2  JMI 6  
JMI CAA C7  C 0 1 N N N -29.069 -12.921 -15.498 -8.205 0.842  -0.062 CAA JMI 7  
JMI CAG C8  C 0 1 Y N N -33.952 -11.102 -13.758 -1.854 -1.731 1.222  CAG JMI 8  
JMI CAH C9  C 0 1 Y N N -31.920 -11.932 -12.756 -1.609 -1.166 -1.094 CAH JMI 9  
JMI CAI C10 C 0 1 Y N N -33.702 -9.844  -13.215 -0.483 -1.679 1.382  CAI JMI 10 
JMI CAJ C11 C 0 1 Y N N -31.669 -10.674 -12.219 -0.238 -1.113 -0.938 CAJ JMI 11 
JMI CAK C12 C 0 1 N N N -32.868 -13.357 -15.545 -4.511 -0.152 0.086  CAK JMI 12 
JMI CAM C13 C 0 1 N N N -33.306 -13.395 -14.074 -3.913 -1.533 -0.188 CAM JMI 13 
JMI CAQ C14 C 0 1 N N N -30.427 -13.607 -15.345 -6.709 0.900  0.110  CAQ JMI 14 
JMI CAR C15 C 0 1 Y N N -33.061 -12.143 -13.526 -2.417 -1.475 -0.015 CAR JMI 15 
JMI CAS C16 C 0 1 Y N N -32.562 -9.633  -12.443 0.329  -1.369 0.301  CAS JMI 16 
JMI NAN N1  N 0 1 N N N -31.489 -12.847 -15.646 -5.966 -0.208 -0.082 NAN JMI 17 
JMI O1  O1  O 0 1 N N N -32.304 -8.400  -11.923 1.678  -1.317 0.457  O1  JMI 18 
JMI O2  O2  O 0 1 N N N -29.320 -6.297  -12.554 4.707  -0.949 -1.573 O2  JMI 19 
JMI O3  O3  O 0 1 N N N -30.927 -4.334  -11.412 5.775  -0.442 0.964  O3  JMI 20 
JMI O4  O4  O 0 1 N N N -32.804 -4.181  -13.474 4.419  2.039  1.396  O4  JMI 21 
JMI O5  O5  O 0 1 N N N -31.424 -7.550  -13.969 2.244  0.380  -1.042 O5  JMI 22 
JMI O6  O6  O 0 1 N N N -33.414 -7.311  -16.072 0.895  2.889  -0.666 O6  JMI 23 
JMI OAB O7  O 0 1 N N N -30.503 -14.774 -14.964 -6.174 1.943  0.421  OAB JMI 24 
JMI H1  H1  H 0 1 N N N -30.917 -4.937  -13.941 4.671  1.418  -0.559 H1  JMI 25 
JMI H2  H2  H 0 1 N N N -33.326 -6.783  -13.551 2.003  1.082  0.886  H2  JMI 26 
JMI H3  H3  H 0 1 N N N -31.744 -6.083  -16.076 2.648  3.434  0.283  H3  JMI 27 
JMI H4  H4  H 0 1 N N N -33.290 -5.294  -15.612 2.822  2.915  -1.411 H4  JMI 28 
JMI H5  H5  H 0 1 N N N -32.440 -5.780  -11.445 3.821  -0.528 1.637  H5  JMI 29 
JMI H6  H6  H 0 1 N N N -30.348 -8.682  -12.598 2.146  -1.626 -1.532 H6  JMI 30 
JMI H7  H7  H 0 1 N N N -30.347 -6.911  -10.842 4.090  -2.258 -0.097 H7  JMI 31 
JMI H8  H8  H 0 1 N N N -28.269 -13.624 -15.223 -8.461 1.071  -1.097 H8  JMI 32 
JMI H9  H9  H 0 1 N N N -28.934 -12.603 -16.543 -8.562 -0.157 0.188  H9  JMI 33 
JMI H10 H10 H 0 1 N N N -29.026 -12.041 -14.839 -8.675 1.572  0.597  H10 JMI 34 
JMI H11 H11 H 0 1 N N N -34.835 -11.268 -14.357 -2.487 -1.977 2.062  H11 JMI 35 
JMI H12 H12 H 0 1 N N N -31.231 -12.744 -12.576 -2.051 -0.967 -2.059 H12 JMI 36 
JMI H13 H13 H 0 1 N N N -34.392 -9.032  -13.393 -0.044 -1.879 2.349  H13 JMI 37 
JMI H14 H14 H 0 1 N N N -30.781 -10.506 -11.628 0.393  -0.872 -1.782 H14 JMI 38 
JMI H15 H15 H 0 1 N N N -33.543 -12.697 -16.109 -4.275 0.152  1.106  H15 JMI 39 
JMI H16 H16 H 0 1 N N N -32.913 -14.373 -15.965 -4.093 0.571  -0.614 H16 JMI 40 
JMI H17 H17 H 0 1 N N N -34.379 -13.629 -14.009 -4.332 -2.255 0.513  H17 JMI 41 
JMI H18 H18 H 0 1 N N N -32.731 -14.160 -13.532 -4.150 -1.836 -1.207 H18 JMI 42 
JMI H19 H19 H 0 1 N N N -31.341 -11.905 -15.948 -6.393 -1.042 -0.330 H19 JMI 43 
JMI H20 H20 H 0 1 N N N -28.948 -5.535  -12.126 4.483  -1.507 -2.331 H20 JMI 44 
JMI H21 H21 H 0 1 N N N -30.718 -4.494  -10.499 6.032  -1.336 1.227  H21 JMI 45 
JMI H22 H22 H 0 1 N N N -32.448 -3.399  -13.069 5.349  1.999  1.658  H22 JMI 46 
JMI H23 H23 H 0 1 N N N -33.603 -7.144  -16.988 0.638  3.773  -0.962 H23 JMI 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JMI O6  C6  SING N N 1  
JMI NAN CAK SING N N 2  
JMI NAN CAQ SING N N 3  
JMI CAK CAM SING N N 4  
JMI C6  C5  SING N N 5  
JMI CAA CAQ SING N N 6  
JMI CAQ OAB DOUB N N 7  
JMI CAM CAR SING N N 8  
JMI C5  O5  SING N N 9  
JMI C5  C4  SING N N 10 
JMI O5  C1  SING N N 11 
JMI CAG CAR DOUB Y N 12 
JMI CAG CAI SING Y N 13 
JMI CAR CAH SING Y N 14 
JMI O4  C4  SING N N 15 
JMI C4  C3  SING N N 16 
JMI CAI CAS DOUB Y N 17 
JMI CAH CAJ DOUB Y N 18 
JMI C1  O1  SING N N 19 
JMI C1  C2  SING N N 20 
JMI O2  C2  SING N N 21 
JMI CAS CAJ SING Y N 22 
JMI CAS O1  SING N N 23 
JMI C3  C2  SING N N 24 
JMI C3  O3  SING N N 25 
JMI C4  H1  SING N N 26 
JMI C5  H2  SING N N 27 
JMI C6  H3  SING N N 28 
JMI C6  H4  SING N N 29 
JMI C3  H5  SING N N 30 
JMI C1  H6  SING N N 31 
JMI C2  H7  SING N N 32 
JMI CAA H8  SING N N 33 
JMI CAA H9  SING N N 34 
JMI CAA H10 SING N N 35 
JMI CAG H11 SING N N 36 
JMI CAH H12 SING N N 37 
JMI CAI H13 SING N N 38 
JMI CAJ H14 SING N N 39 
JMI CAK H15 SING N N 40 
JMI CAK H16 SING N N 41 
JMI CAM H17 SING N N 42 
JMI CAM H18 SING N N 43 
JMI NAN H19 SING N N 44 
JMI O2  H20 SING N N 45 
JMI O3  H21 SING N N 46 
JMI O4  H22 SING N N 47 
JMI O6  H23 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JMI InChI            InChI                1.06  "InChI=1S/C16H23NO7/c1-9(19)17-7-6-10-2-4-11(5-3-10)23-16-15(22)14(21)13(20)12(8-18)24-16/h2-5,12-16,18,20-22H,6-8H2,1H3,(H,17,19)/t12-,13-,14+,15+,16+/m1/s1" 
JMI InChIKey         InChI                1.06  JVYCDFJBIOIPDL-OWYFMNJBSA-N                                                                                                                                    
JMI SMILES_CANONICAL CACTVS               3.385 "CC(=O)NCCc1ccc(O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]2O)cc1"                                                                                                
JMI SMILES           CACTVS               3.385 "CC(=O)NCCc1ccc(O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)cc1"                                                                                                       
JMI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCc1ccc(cc1)O[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O"                                                                                              
JMI SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCc1ccc(cc1)OC2C(C(C(C(O2)CO)O)O)O"                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           JMI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[2-[4-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxyphenyl]ethyl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JMI "Create component" 2022-08-23 PDBJ 
JMI "Initial release"  2022-09-07 RCSB 
# 
