data_J4I
# 
_chem_comp.id                                    J4I 
_chem_comp.name                                  "6-{[(5-methoxy-3,4,6-trimethylpyridin-2-yl)methyl]sulfanyl}-2H,5H-[1,3]dioxolo[4,5-f]benzimidazole" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H19 N3 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-01 
_chem_comp.pdbx_modified_date                    2022-10-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        357.427 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J4I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5SH4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J4I C1  C1  C 0 1 Y N N 95.049 -12.708 9.005  3.539  0.008  -1.000 C1  J4I 1  
J4I C2  C2  C 0 1 Y N N 93.585 -12.748 8.984  3.155  0.016  0.350  C2  J4I 2  
J4I C3  C3  C 0 1 Y N N 95.780 -13.224 7.924  4.884  -0.010 -1.340 C3  J4I 3  
J4I N4  N1  N 0 1 Y N N 95.442 -12.096 10.230 2.364  0.027  -1.736 N4  J4I 4  
J4I C5  C4  C 0 1 Y N N 92.787 -13.258 7.943  4.135  0.006  1.347  C5  J4I 5  
J4I N6  N2  N 0 1 Y N N 93.114 -12.173 10.148 1.795  0.034  0.380  N6  J4I 6  
J4I C7  C5  C 0 1 Y N N 94.959 -13.735 6.924  5.847  -0.020 -0.347 C7  J4I 7  
J4I C8  C6  C 0 1 Y N N 94.211 -11.801 10.874 1.328  0.046  -0.844 C8  J4I 8  
J4I C9  C7  C 0 1 Y N N 93.520 -13.755 6.911  5.470  -0.012 0.998  C9  J4I 9  
J4I O10 O1  O 0 1 N N N 95.353 -14.333 5.725  7.211  -0.038 -0.417 O10 J4I 10 
J4I S11 S1  S 0 1 N N N 94.059 -11.026 12.376 -0.380 0.075  -1.276 S11 J4I 11 
J4I O12 O2  O 0 1 N N N 93.020 -14.341 5.723  6.601  -0.024 1.766  O12 J4I 12 
J4I C13 C8  C 0 1 N N N 94.173 -14.928 5.096  7.668  0.374  0.886  C13 J4I 13 
J4I C14 C9  C 0 1 N N N 92.678 -9.868  12.172 -1.121 0.090  0.375  C14 J4I 14 
J4I C15 C10 C 0 1 Y N N 92.349 -9.186  13.469 -2.623 0.115  0.251  C15 J4I 15 
J4I C16 C11 C 0 1 Y N N 93.033 -8.020  13.873 -3.323 -1.076 0.197  C16 J4I 16 
J4I N17 N3  N 0 1 Y N N 91.355 -9.741  14.207 -3.252 1.273  0.201  N17 J4I 17 
J4I C18 C12 C 0 1 Y N N 92.665 -7.404  15.081 -4.704 -1.044 0.083  C18 J4I 18 
J4I C19 C13 C 0 1 N N N 94.107 -7.427  13.058 -2.593 -2.392 0.260  C19 J4I 19 
J4I C20 C14 C 0 1 Y N N 91.002 -9.183  15.380 -4.564 1.347  0.093  C20 J4I 20 
J4I C21 C15 C 0 1 Y N N 91.658 -7.998  15.842 -5.334 0.194  0.027  C21 J4I 21 
J4I C22 C16 C 0 1 N N N 93.364 -6.184  15.575 -5.502 -2.320 0.020  C22 J4I 22 
J4I C23 C17 C 0 1 N N N 89.919 -9.852  16.180 -5.233 2.696  0.041  C23 J4I 23 
J4I O24 O3  O 0 1 N N N 91.331 -7.388  17.044 -6.686 0.275  -0.084 O24 J4I 24 
J4I C25 C18 C 0 1 N N N 90.663 -8.180  18.016 -7.436 0.317  1.131  C25 J4I 25 
J4I H1  H1  H 0 1 N N N 96.859 -13.224 7.874  5.179  -0.017 -2.378 H1  J4I 26 
J4I H2  H2  H 0 1 N N N 96.369 -11.916 10.560 2.290  0.027  -2.703 H2  J4I 27 
J4I H3  H3  H 0 1 N N N 91.707 -13.255 7.962  3.847  0.013  2.388  H3  J4I 28 
J4I H5  H5  H 0 1 N N N 94.169 -14.709 4.018  8.592  -0.142 1.147  H5  J4I 29 
J4I H6  H6  H 0 1 N N N 94.172 -16.017 5.249  7.808  1.454  0.918  H6  J4I 30 
J4I H7  H7  H 0 1 N N N 92.954 -9.108  11.426 -0.817 -0.805 0.918  H7  J4I 31 
J4I H8  H8  H 0 1 N N N 91.794 -10.421 11.822 -0.786 0.975  0.916  H8  J4I 32 
J4I H9  H9  H 0 1 N N N 93.675 -6.701  12.353 -2.501 -2.707 1.300  H9  J4I 33 
J4I H10 H10 H 0 1 N N N 94.826 -6.916  13.715 -3.150 -3.144 -0.299 H10 J4I 34 
J4I H11 H11 H 0 1 N N N 94.622 -8.221  12.497 -1.600 -2.279 -0.174 H11 J4I 35 
J4I H12 H12 H 0 1 N N N 92.843 -5.288  15.207 -5.779 -2.626 1.029  H12 J4I 36 
J4I H13 H13 H 0 1 N N N 93.364 -6.182  16.675 -6.404 -2.156 -0.570 H13 J4I 37 
J4I H14 H14 H 0 1 N N N 94.401 -6.182  15.208 -4.901 -3.102 -0.444 H14 J4I 38 
J4I H15 H15 H 0 1 N N N 89.567 -10.746 15.645 -5.310 3.023  -0.996 H15 J4I 39 
J4I H16 H16 H 0 1 N N N 90.317 -10.146 17.162 -6.231 2.623  0.474  H16 J4I 40 
J4I H17 H17 H 0 1 N N N 89.081 -9.153  16.318 -4.643 3.417  0.606  H17 J4I 41 
J4I H18 H18 H 0 1 N N N 90.467 -7.573  18.912 -8.500 0.381  0.900  H18 J4I 42 
J4I H19 H19 H 0 1 N N N 89.710 -8.541  17.602 -7.244 -0.587 1.708  H19 J4I 43 
J4I H20 H20 H 0 1 N N N 91.295 -9.039  18.286 -7.138 1.190  1.712  H20 J4I 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J4I C1  C2  DOUB Y N 1  
J4I C1  C3  SING Y N 2  
J4I C1  N4  SING Y N 3  
J4I C2  C5  SING Y N 4  
J4I C2  N6  SING Y N 5  
J4I C3  C7  DOUB Y N 6  
J4I N4  C8  SING Y N 7  
J4I C5  C9  DOUB Y N 8  
J4I N6  C8  DOUB Y N 9  
J4I C7  C9  SING Y N 10 
J4I C7  O10 SING N N 11 
J4I C8  S11 SING N N 12 
J4I C9  O12 SING N N 13 
J4I O10 C13 SING N N 14 
J4I S11 C14 SING N N 15 
J4I O12 C13 SING N N 16 
J4I C14 C15 SING N N 17 
J4I C15 C16 DOUB Y N 18 
J4I C15 N17 SING Y N 19 
J4I C16 C18 SING Y N 20 
J4I C16 C19 SING N N 21 
J4I N17 C20 DOUB Y N 22 
J4I C18 C21 DOUB Y N 23 
J4I C18 C22 SING N N 24 
J4I C20 C21 SING Y N 25 
J4I C20 C23 SING N N 26 
J4I C21 O24 SING N N 27 
J4I O24 C25 SING N N 28 
J4I C3  H1  SING N N 29 
J4I N4  H2  SING N N 30 
J4I C5  H3  SING N N 31 
J4I C13 H5  SING N N 32 
J4I C13 H6  SING N N 33 
J4I C14 H7  SING N N 34 
J4I C14 H8  SING N N 35 
J4I C19 H9  SING N N 36 
J4I C19 H10 SING N N 37 
J4I C19 H11 SING N N 38 
J4I C22 H12 SING N N 39 
J4I C22 H13 SING N N 40 
J4I C22 H14 SING N N 41 
J4I C23 H15 SING N N 42 
J4I C23 H16 SING N N 43 
J4I C23 H17 SING N N 44 
J4I C25 H18 SING N N 45 
J4I C25 H19 SING N N 46 
J4I C25 H20 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J4I SMILES           ACDLabs              12.01 "Cc1c(C)c(OC)c(C)nc1CSc1[NH]c2cc3OCOc3cc2n1"                                                                                     
J4I InChI            InChI                1.03  "InChI=1S/C18H19N3O3S/c1-9-10(2)17(22-4)11(3)19-14(9)7-25-18-20-12-5-15-16(24-8-23-15)6-13(12)21-18/h5-6H,7-8H2,1-4H3,(H,20,21)" 
J4I InChIKey         InChI                1.03  WCDJVYBGDYQGOC-UHFFFAOYSA-N                                                                                                      
J4I SMILES_CANONICAL CACTVS               3.385 "COc1c(C)nc(CSc2[nH]c3cc4OCOc4cc3n2)c(C)c1C"                                                                                     
J4I SMILES           CACTVS               3.385 "COc1c(C)nc(CSc2[nH]c3cc4OCOc4cc3n2)c(C)c1C"                                                                                     
J4I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(nc1CSc2[nH]c3cc4c(cc3n2)OCO4)C)OC)C"                                                                                   
J4I SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(nc1CSc2[nH]c3cc4c(cc3n2)OCO4)C)OC)C"                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
J4I "SYSTEMATIC NAME" ACDLabs              12.01 "6-{[(5-methoxy-3,4,6-trimethylpyridin-2-yl)methyl]sulfanyl}-2H,5H-[1,3]dioxolo[4,5-f]benzimidazole" 
J4I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[(5-methoxy-3,4,6-trimethyl-pyridin-2-yl)methylsulfanyl]-5~{H}-[1,3]dioxolo[4,5-f]benzimidazole"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J4I "Create component" 2022-02-01 RCSB 
J4I "Initial release"  2022-10-12 RCSB 
# 
