data_J3I
# 
_chem_comp.id                                    J3I 
_chem_comp.name                                  "(2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(1-carbamimidoylpiperidin-4-yl)methyl]pyrrolidine-2-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H32 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-12-13 
_chem_comp.pdbx_modified_date                    2018-01-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        400.518 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J3I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5MNQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J3I C1  C1  C 0 1 N N N 16.942 61.189 8.476  6.575  -1.472 -0.341 C1  J3I 1  
J3I C2  C2  C 0 1 N N N 16.146 60.581 9.610  5.174  -1.706 0.233  C2  J3I 2  
J3I C3  C3  C 0 1 N N N 16.980 60.410 10.858 4.204  -0.687 -0.370 C3  J3I 3  
J3I C4  C4  C 0 1 N N N 16.306 60.025 12.152 2.796  -0.940 0.175  C4  J3I 4  
J3I C5  C5  C 0 1 N N N 16.487 57.681 12.770 0.539  -0.089 -0.169 C5  J3I 5  
J3I C6  C6  C 0 1 N N S 15.907 56.269 12.689 -0.437 0.833  -0.854 C6  J3I 6  
J3I C9  C7  C 0 1 N N N 16.902 54.370 13.894 -2.279 1.837  0.296  C9  J3I 7  
J3I C10 C8  C 0 1 N N N 17.964 55.322 11.802 -2.479 -0.559 -0.429 C10 J3I 8  
J3I C11 C9  C 0 1 N N R 19.132 54.342 11.892 -3.868 -0.659 0.148  C11 J3I 9  
J3I C12 C10 C 0 1 N N N 18.986 53.179 10.901 -4.870 -0.032 -0.823 C12 J3I 10 
J3I C13 C11 C 0 1 Y N N 17.842 52.244 11.191 -6.239 -0.022 -0.194 C13 J3I 11 
J3I C15 C12 C 0 1 Y N N 16.767 50.616 12.605 -7.901 1.073  1.138  C15 J3I 12 
J3I C18 C13 C 0 1 Y N N 16.802 52.097 10.289 -7.088 -1.099 -0.368 C18 J3I 13 
J3I N   N1  N 0 1 N N N 19.943 60.201 6.752  9.026  -0.751 0.841  N   J3I 14 
J3I C   C14 C 0 1 N N N 18.672 60.521 6.963  8.132  0.243  0.521  C   J3I 15 
J3I O   O1  O 0 1 N N N 17.482 57.897 13.461 0.148  -0.870 0.672  O   J3I 16 
J3I C14 C15 C 0 1 Y N N 17.811 51.487 12.354 -6.645 1.063  0.561  C14 J3I 17 
J3I C16 C16 C 0 1 Y N N 15.744 50.483 11.695 -8.752 -0.002 0.960  C16 J3I 18 
J3I C17 C17 C 0 1 Y N N 15.762 51.219 10.539 -8.344 -1.089 0.209  C17 J3I 19 
J3I C19 C18 C 0 1 N N N 18.195 59.543 10.523 4.649  0.728  0.005  C19 J3I 20 
J3I C20 C19 C 0 1 N N N 18.985 60.079 9.320  6.044  0.989  -0.571 C20 J3I 21 
J3I C7  C20 C 0 1 N N N 15.078 55.961 13.949 -0.077 2.302  -0.546 C7  J3I 22 
J3I C8  C21 C 0 1 N N N 15.491 54.581 14.386 -1.467 2.971  -0.377 C8  J3I 23 
J3I N1  N2  N 0 1 N N N 17.954 60.933 5.925  8.403  1.483  0.817  N1  J3I 24 
J3I N2  N3  N 0 1 N N N 18.114 60.363 8.168  6.952  -0.070 -0.112 N2  J3I 25 
J3I N3  N4  N 0 1 N N N 15.863 58.637 12.081 1.847  -0.044 -0.491 N3  J3I 26 
J3I N4  N5  N 0 1 N N N 17.003 55.292 12.744 -1.793 0.598  -0.337 N4  J3I 27 
J3I N5  N6  N 0 1 N N N 20.367 55.095 11.532 -4.209 -2.072 0.360  N5  J3I 28 
J3I O1  O2  O 0 1 N N N 17.923 56.091 10.860 -1.979 -1.519 -0.975 O1  J3I 29 
J3I H1  H1  H 0 1 N N N 17.276 62.196 8.768  7.288  -2.128 0.158  H1  J3I 30 
J3I H2  H2  H 0 1 N N N 16.304 61.259 7.583  6.572  -1.681 -1.410 H2  J3I 31 
J3I H3  H3  H 0 1 N N N 15.295 61.239 9.839  4.843  -2.714 -0.015 H3  J3I 32 
J3I H4  H4  H 0 1 N N N 15.773 59.595 9.294  5.200  -1.586 1.316  H4  J3I 33 
J3I H5  H5  H 0 1 N N N 17.400 61.408 11.050 4.197  -0.790 -1.455 H5  J3I 34 
J3I H6  H6  H 0 1 N N N 17.017 60.140 12.983 2.514  -1.975 -0.015 H6  J3I 35 
J3I H7  H7  H 0 1 N N N 15.437 60.678 12.320 2.783  -0.751 1.248  H7  J3I 36 
J3I H8  H8  H 0 1 N N N 15.297 56.147 11.782 -0.415 0.662  -1.930 H8  J3I 37 
J3I H9  H9  H 0 1 N N N 17.057 53.328 13.578 -2.085 1.816  1.369  H9  J3I 38 
J3I H10 H10 H 0 1 N N N 17.634 54.630 14.673 -3.344 1.969  0.107  H10 J3I 39 
J3I H11 H11 H 0 1 N N N 19.210 53.949 12.916 -3.905 -0.130 1.100  H11 J3I 40 
J3I H12 H12 H 0 1 N N N 19.918 52.595 10.918 -4.566 0.990  -1.049 H12 J3I 41 
J3I H13 H13 H 0 1 N N N 18.837 53.602 9.897  -4.897 -0.616 -1.743 H13 J3I 42 
J3I H14 H14 H 0 1 N N N 16.755 50.039 13.518 -8.217 1.920  1.728  H14 J3I 43 
J3I H15 H15 H 0 1 N N N 16.802 52.676 9.377  -6.770 -1.948 -0.954 H15 J3I 44 
J3I H16 H16 H 0 1 N N N 20.498 59.836 7.500  8.794  -1.680 0.686  H16 J3I 45 
J3I H17 H17 H 0 1 N N N 20.346 60.325 5.845  9.889  -0.523 1.221  H17 J3I 46 
J3I H18 H18 H 0 1 N N N 18.613 51.580 13.072 -5.980 1.903  0.701  H18 J3I 47 
J3I H19 H19 H 0 1 N N N 14.930 49.801 11.891 -9.733 0.005  1.411  H19 J3I 48 
J3I H20 H20 H 0 1 N N N 14.962 51.113 9.821  -9.008 -1.930 0.073  H20 J3I 49 
J3I H21 H21 H 0 1 N N N 17.849 58.525 10.293 3.945  1.452  -0.405 H21 J3I 50 
J3I H22 H22 H 0 1 N N N 18.861 59.515 11.398 4.680  0.825  1.090  H22 J3I 51 
J3I H23 H23 H 0 1 N N N 19.732 59.328 9.023  5.997  0.983  -1.660 H23 J3I 52 
J3I H24 H24 H 0 1 N N N 19.496 61.007 9.616  6.406  1.958  -0.227 H24 J3I 53 
J3I H25 H25 H 0 1 N N N 15.296 56.694 14.739 0.500  2.372  0.377  H25 J3I 54 
J3I H26 H26 H 0 1 N N N 14.003 55.983 13.715 0.468  2.748  -1.378 H26 J3I 55 
J3I H27 H27 H 0 1 N N N 14.820 53.828 13.946 -1.893 3.236  -1.344 H27 J3I 56 
J3I H28 H28 H 0 1 N N N 15.458 54.506 15.483 -1.403 3.845  0.273  H28 J3I 57 
J3I H29 H29 H 0 1 N N N 16.998 61.094 6.171  7.741  2.175  0.662  H29 J3I 58 
J3I H30 H30 H 0 1 N N N 15.080 58.399 11.507 2.160  0.581  -1.163 H30 J3I 59 
J3I H31 H31 H 0 1 N N N 20.487 55.861 12.164 -4.182 -2.585 -0.508 H31 J3I 60 
J3I H32 H32 H 0 1 N N N 21.158 54.486 11.592 -3.601 -2.492 1.047  H32 J3I 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J3I N1  C   DOUB N N 1  
J3I N   C   SING N N 2  
J3I C   N2  SING N N 3  
J3I N2  C1  SING N N 4  
J3I N2  C20 SING N N 5  
J3I C1  C2  SING N N 6  
J3I C20 C19 SING N N 7  
J3I C2  C3  SING N N 8  
J3I C18 C17 DOUB Y N 9  
J3I C18 C13 SING Y N 10 
J3I C19 C3  SING N N 11 
J3I C17 C16 SING Y N 12 
J3I C3  C4  SING N N 13 
J3I O1  C10 DOUB N N 14 
J3I C12 C13 SING N N 15 
J3I C12 C11 SING N N 16 
J3I C13 C14 DOUB Y N 17 
J3I N5  C11 SING N N 18 
J3I C16 C15 DOUB Y N 19 
J3I C10 C11 SING N N 20 
J3I C10 N4  SING N N 21 
J3I N3  C4  SING N N 22 
J3I N3  C5  SING N N 23 
J3I C14 C15 SING Y N 24 
J3I C6  N4  SING N N 25 
J3I C6  C5  SING N N 26 
J3I C6  C7  SING N N 27 
J3I N4  C9  SING N N 28 
J3I C5  O   DOUB N N 29 
J3I C9  C8  SING N N 30 
J3I C7  C8  SING N N 31 
J3I C1  H1  SING N N 32 
J3I C1  H2  SING N N 33 
J3I C2  H3  SING N N 34 
J3I C2  H4  SING N N 35 
J3I C3  H5  SING N N 36 
J3I C4  H6  SING N N 37 
J3I C4  H7  SING N N 38 
J3I C6  H8  SING N N 39 
J3I C9  H9  SING N N 40 
J3I C9  H10 SING N N 41 
J3I C11 H11 SING N N 42 
J3I C12 H12 SING N N 43 
J3I C12 H13 SING N N 44 
J3I C15 H14 SING N N 45 
J3I C18 H15 SING N N 46 
J3I N   H16 SING N N 47 
J3I N   H17 SING N N 48 
J3I C14 H18 SING N N 49 
J3I C16 H19 SING N N 50 
J3I C17 H20 SING N N 51 
J3I C19 H21 SING N N 52 
J3I C19 H22 SING N N 53 
J3I C20 H23 SING N N 54 
J3I C20 H24 SING N N 55 
J3I C7  H25 SING N N 56 
J3I C7  H26 SING N N 57 
J3I C8  H27 SING N N 58 
J3I C8  H28 SING N N 59 
J3I N1  H29 SING N N 60 
J3I N3  H30 SING N N 61 
J3I N5  H31 SING N N 62 
J3I N5  H32 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J3I InChI            InChI                1.03  "InChI=1S/C21H32N6O2/c22-17(13-15-5-2-1-3-6-15)20(29)27-10-4-7-18(27)19(28)25-14-16-8-11-26(12-9-16)21(23)24/h1-3,5-6,16-18H,4,7-14,22H2,(H3,23,24)(H,25,28)/t17-,18+/m1/s1" 
J3I InChIKey         InChI                1.03  MQLNFLUDIXFKTN-MSOLQXFVSA-N                                                                                                                                                  
J3I SMILES_CANONICAL CACTVS               3.385 "N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)NCC3CCN(CC3)C(N)=N"                                                                                                                   
J3I SMILES           CACTVS               3.385 "N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)NCC3CCN(CC3)C(N)=N"                                                                                                                     
J3I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[H]/N=C(\N)/N1CCC(CC1)CNC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc3ccccc3)N"                                                                                                           
J3I SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NCC3CCN(CC3)C(=N)N)N"                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
J3I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(1-carbamimidoylpiperidin-4-yl)methyl]pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J3I "Create component" 2016-12-13 EBI  
J3I "Initial release"  2018-01-17 RCSB 
# 
