data_H3I
# 
_chem_comp.id                                    H3I 
_chem_comp.name                                  "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(7~{H}-purin-6-ylcarbamoyl)amino]-2-azanyl-butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H24 N12 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-21 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        528.481 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     H3I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PWB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
H3I N1   N1  N 0 1 Y N N N N N 9.391  -14.613 -10.670 -7.421 0.844  1.092  N1   H3I 1  
H3I N3   N2  N 0 1 Y N N N N N 9.970  -16.806 -10.069 -5.668 -0.626 1.423  N3   H3I 2  
H3I C4   C1  C 0 1 Y N N N N N 9.864  -17.216 -11.328 -4.949 -0.050 0.465  C4   H3I 3  
H3I C5   C2  C 0 1 Y N N N N N 9.492  -16.306 -12.302 -5.490 1.044  -0.232 C5   H3I 4  
H3I C6   C3  C 0 1 Y N N N N N 9.257  -14.954 -11.923 -6.777 1.483  0.120  C6   H3I 5  
H3I C8   C4  C 0 1 Y N N N N N 9.765  -18.248 -13.245 -3.516 0.672  -1.048 C8   H3I 6  
H3I N    N3  N 0 1 N N N N N N 17.998 -22.481 -10.032 5.277  -1.609 1.665  N    H3I 7  
H3I CA   C5  C 0 1 N N S N N N 16.780 -23.139 -9.679  4.847  -2.654 0.726  CA   H3I 8  
H3I C    C6  C 0 1 N N N N N N 17.136 -24.587 -9.453  6.035  -3.134 -0.068 C    H3I 9  
H3I O    O1  O 0 1 N N N N N N 16.272 -25.453 -9.425  7.024  -2.446 -0.151 O    H3I 10 
H3I CB   C7  C 0 1 N N N N N N 15.714 -22.996 -10.788 3.795  -2.083 -0.226 CB   H3I 11 
H3I OXT  O2  O 0 1 N N N N N N 18.313 -24.860 -9.308  5.993  -4.327 -0.683 OXT  H3I 12 
H3I C2   C8  C 0 1 Y N N N N N 9.742  -15.528 -9.750  -6.871 -0.180 1.718  C2   H3I 13 
H3I CAL  C9  C 0 1 Y N N N N N 13.007 -25.257 -17.455 1.395  4.156  -1.332 CAL  H3I 14 
H3I CAN  C10 C 0 1 Y N N N N N 10.581 -27.544 -14.506 4.825  4.300  1.440  CAN  H3I 15 
H3I CAQ  C11 C 0 1 N N N N N N 14.172 -23.330 -10.440 2.540  -1.710 0.566  CAQ  H3I 16 
H3I CAR  C12 C 0 1 N N N N N N 13.191 -21.626 -12.072 0.563  -2.056 -0.987 CAR  H3I 17 
H3I CBC  C13 C 0 1 N N N N N N 13.328 -24.064 -12.836 1.494  0.161  -0.593 CBC  H3I 18 
H3I CBE  C14 C 0 1 Y N N N N N 12.523 -24.668 -15.251 2.347  2.348  -0.259 CBE  H3I 19 
H3I CBG  C15 C 0 1 Y N N N N N 11.789 -25.842 -15.078 3.261  3.212  0.344  CBG  H3I 20 
H3I CBI  C16 C 0 1 Y N N N N N 11.686 -26.703 -16.174 3.182  4.585  0.054  CBI  H3I 21 
H3I CBL  C17 C 0 1 N N R N N N 10.886 -21.777 -11.036 -1.659 -3.218 -0.697 CBL  H3I 22 
H3I CBN  C18 C 0 1 N N S N N N 9.937  -20.716 -11.726 -3.054 -2.622 -0.407 CBN  H3I 23 
H3I CBP  C19 C 0 1 N N R N N N 12.241 -21.076 -10.956 -0.678 -2.185 -0.101 CBP  H3I 24 
H3I CBR  C20 C 0 1 N N R N N N 10.397 -19.619 -11.236 -2.751 -1.299 0.330  CBR  H3I 25 
H3I N6   N4  N 0 1 N N N N N N 8.877  -13.958 -12.939 -7.362 2.556  -0.530 N6   H3I 26 
H3I N7   N5  N 0 1 Y N N N N N 9.446  -16.981 -13.469 -4.565 1.437  -1.140 N7   H3I 27 
H3I N9   N6  N 0 1 Y N N N N N 10.025 -18.400 -11.940 -3.704 -0.261 -0.072 N9   H3I 28 
H3I NAT  N7  N 0 1 Y N N N N N 13.122 -24.418 -16.434 1.438  2.860  -1.084 NAT  H3I 29 
H3I NAV  N8  N 0 1 Y N N N N N 12.310 -26.369 -17.342 2.236  5.008  -0.788 NAV  H3I 30 
H3I NAX  N9  N 0 1 Y N N N N N 11.091 -26.405 -14.076 4.312  3.067  1.225  NAX  H3I 31 
H3I NAY  N10 N 0 1 N N N N N N 12.730 -23.655 -14.143 2.385  0.982  -0.003 NAY  H3I 32 
H3I NBS  N11 N 0 1 N N N N N N 13.534 -23.010 -11.770 1.531  -1.164 -0.345 NBS  H3I 33 
H3I NBU  N12 N 0 1 Y N N N N N 10.939 -27.738 -15.786 4.162  5.188  0.753  NBU  H3I 34 
H3I OAD  O3  O 0 1 N N N N N N 13.615 -25.193 -12.630 0.658  0.614  -1.350 OAD  H3I 35 
H3I OAH  O4  O 0 1 N N N N N N 10.484 -22.045 -9.791  -1.510 -4.483 -0.048 OAH  H3I 36 
H3I OAJ  O5  O 0 1 N N N N N N 8.515  -20.917 -11.267 -3.809 -3.500 0.431  OAJ  H3I 37 
H3I OBA  O6  O 0 1 N N N N N N 12.017 -19.805 -11.242 -1.414 -0.943 -0.086 OBA  H3I 38 
H3I H81  H1  H 0 1 N N N N N N 9.808  -19.028 -13.991 -2.627 0.763  -1.655 H81  H3I 39 
H3I H2   H2  H 0 1 N N N N N N 17.818 -21.511 -10.194 5.677  -0.824 1.174  H2   H3I 40 
H3I H    H3  H 0 1 N N N N N N 18.657 -22.578 -9.286  4.512  -1.316 2.254  H    H3I 41 
H3I HA   H5  H 0 1 N N N N N N 16.376 -22.717 -8.747  4.420  -3.489 1.282  HA   H3I 42 
H3I HB3  H6  H 0 1 N N N N N N 15.747 -21.953 -11.135 4.192  -1.195 -0.716 HB3  H3I 43 
H3I HB2  H7  H 0 1 N N N N N N 16.011 -23.665 -11.609 3.541  -2.830 -0.978 HB2  H3I 44 
H3I H3   H8  H 0 1 N N N N N N 18.408 -25.797 -9.181  6.779  -4.592 -1.181 H3   H3I 45 
H3I H21  H9  H 0 1 N N N N N N 9.843  -15.221 -8.720  -7.429 -0.671 2.502  H21  H3I 46 
H3I HAL1 H10 H 0 0 N N N N N N 13.492 -25.025 -18.392 0.644  4.530  -2.013 HAL1 H3I 47 
H3I HAN1 H11 H 0 0 N N N N N N 9.971  -28.215 -13.920 5.662  4.517  2.087  HAN1 H3I 48 
H3I HAQ2 H12 H 0 0 N N N N N N 13.786 -22.687 -9.636  2.142  -2.599 1.057  HAQ2 H3I 49 
H3I HAQ1 H13 H 0 0 N N N N N N 14.034 -24.386 -10.164 2.793  -0.963 1.318  HAQ1 H3I 50 
H3I HAR1 H14 H 0 0 N N N N N N 12.682 -21.577 -13.046 1.013  -3.039 -1.128 HAR1 H3I 51 
H3I HAR2 H15 H 0 0 N N N N N N 14.108 -21.019 -12.107 0.278  -1.646 -1.956 HAR2 H3I 52 
H3I HBL1 H16 H 0 0 N N N N N N 10.958 -22.672 -11.671 -1.503 -3.319 -1.771 HBL1 H3I 53 
H3I HBN1 H17 H 0 0 N N N N N N 10.013 -20.800 -12.820 -3.588 -2.427 -1.337 HBN1 H3I 54 
H3I HBP1 H18 H 0 0 N N N N N N 12.696 -21.234 -9.967  -0.392 -2.472 0.911  HBP1 H3I 55 
H3I HBR1 H19 H 0 0 N N N N N N 10.104 -19.510 -10.181 -2.785 -1.449 1.410  HBR1 H3I 56 
H3I H61  H20 H 0 1 N N N N N N 8.759  -13.066 -12.504 -8.252 2.849  -0.278 H61  H3I 57 
H3I H62  H21 H 0 1 N N N N N N 9.596  -13.898 -13.632 -6.883 3.014  -1.238 H62  H3I 58 
H3I H4   H22 H 0 1 N N N N N N 10.977 -26.024 -13.158 4.625  2.237  1.617  H4   H3I 59 
H3I HAY1 H23 H 0 0 N N N N N N 12.463 -22.702 -14.288 3.053  0.620  0.601  HAY1 H3I 60 
H3I HAH1 H25 H 0 0 N N N N N N 11.069 -22.683 -9.399  -2.142 -5.153 -0.342 HAH1 H3I 61 
H3I HAJ1 H26 H 0 0 N N N N N N 7.953  -20.276 -11.686 -3.977 -4.369 0.041  HAJ1 H3I 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
H3I N   CA   SING N N 1  
H3I CA  C    SING N N 2  
H3I CA  CB   SING N N 3  
H3I CAL NAT  DOUB Y N 4  
H3I CAL NAV  SING Y N 5  
H3I CAN NAX  SING Y N 6  
H3I CAN NBU  DOUB Y N 7  
H3I CAQ NBS  SING N N 8  
H3I CAQ CB   SING N N 9  
H3I CAR CBP  SING N N 10 
H3I CAR NBS  SING N N 11 
H3I C   O    DOUB N N 12 
H3I C   OXT  SING N N 13 
H3I NAT CBE  SING Y N 14 
H3I NAV CBI  DOUB Y N 15 
H3I NAX CBG  SING Y N 16 
H3I NAY CBC  SING N N 17 
H3I NAY CBE  SING N N 18 
H3I OAD CBC  DOUB N N 19 
H3I OAH CBL  SING N N 20 
H3I OAJ CBN  SING N N 21 
H3I CBC NBS  SING N N 22 
H3I CBE CBG  DOUB Y N 23 
H3I CBG CBI  SING Y N 24 
H3I CBI NBU  SING Y N 25 
H3I CBL CBN  SING N N 26 
H3I CBL CBP  SING N N 27 
H3I CBN CBR  SING N N 28 
H3I CBP OBA  SING N N 29 
H3I CBR OBA  SING N N 30 
H3I CBR N9   SING N N 31 
H3I N1  C2   DOUB Y N 32 
H3I N1  C6   SING Y N 33 
H3I C2  N3   SING Y N 34 
H3I N3  C4   DOUB Y N 35 
H3I C4  C5   SING Y N 36 
H3I C4  N9   SING Y N 37 
H3I C5  C6   DOUB Y N 38 
H3I C5  N7   SING Y N 39 
H3I C6  N6   SING N N 40 
H3I N7  C8   DOUB Y N 41 
H3I C8  N9   SING Y N 42 
H3I C8  H81  SING N N 43 
H3I N   H2   SING N N 44 
H3I N   H    SING N N 45 
H3I CA  HA   SING N N 46 
H3I CB  HB3  SING N N 47 
H3I CB  HB2  SING N N 48 
H3I OXT H3   SING N N 49 
H3I C2  H21  SING N N 50 
H3I CAL HAL1 SING N N 51 
H3I CAN HAN1 SING N N 52 
H3I CAQ HAQ2 SING N N 53 
H3I CAQ HAQ1 SING N N 54 
H3I CAR HAR1 SING N N 55 
H3I CAR HAR2 SING N N 56 
H3I CBL HBL1 SING N N 57 
H3I CBN HBN1 SING N N 58 
H3I CBP HBP1 SING N N 59 
H3I CBR HBR1 SING N N 60 
H3I N6  H61  SING N N 61 
H3I N6  H62  SING N N 62 
H3I NAX H4   SING N N 63 
H3I NAY HAY1 SING N N 64 
H3I OAH HAH1 SING N N 65 
H3I OAJ HAJ1 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
H3I InChI            InChI                1.06  "InChI=1S/C20H24N12O6/c21-8(19(35)36)1-2-31(20(37)30-16-11-15(25-4-23-11)26-6-27-16)3-9-12(33)13(34)18(38-9)32-7-29-10-14(22)24-5-28-17(10)32/h4-9,12-13,18,33-34H,1-3,21H2,(H,35,36)(H2,22,24,28)(H2,23,25,26,27,30,37)/t8-,9+,12-,13?,18+/m0/s1" 
H3I InChIKey         InChI                1.06  OORXHLVXCSLOBF-WXSQNYJTSA-N                                                                                                                                                                                                                        
H3I SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCN(C[C@H]1O[C@H]([C@@H](O)[C@H]1O)n2cnc3c(N)ncnc23)C(=O)Nc4ncnc5nc[nH]c45)C(O)=O"                                                                                                                                                        
H3I SMILES           CACTVS               3.385 "N[CH](CCN(C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(=O)Nc4ncnc5nc[nH]c45)C(O)=O"                                                                                                                                                               
H3I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1[nH]c2c(n1)ncnc2NC(=O)N(CC[C@@H](C(=O)O)N)C[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O"                                                                                                                                                     
H3I SMILES           "OpenEye OEToolkits" 2.0.7 "c1[nH]c2c(n1)ncnc2NC(=O)N(CCC(C(=O)O)N)CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O"                                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           H3I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(7~{H}-purin-6-ylcarbamoyl)amino]-2-azanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
H3I "Create component" 2023-07-21 PDBE 
H3I "Initial release"  2023-11-08 RCSB 
# 
