data_G3I
# 
_chem_comp.id                                    G3I 
_chem_comp.name                                  "(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranoside" 
_chem_comp.type                                  saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C24 H43 N O18" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Cellotetraose-like isofagomine; Cellotriosyl isofagomine" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-04-17 
_chem_comp.pdbx_modified_date                    2020-05-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        633.594 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G3I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3CUG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G3I O24  O24  O 0 1 N N N 9.056  62.127 44.190 -6.490  2.799  -1.112 O24  G3I 1  
G3I C24  C24  C 0 1 N N R 8.481  60.813 44.087 -6.773  1.413  -0.907 C24  G3I 2  
G3I C34  C34  C 0 1 N N S 8.791  59.990 45.341 -8.074  1.269  -0.111 C34  G3I 3  
G3I O34  O34  O 0 1 N N N 8.301  60.673 46.507 -9.160  1.804  -0.869 O34  G3I 4  
G3I C44  C44  C 0 1 N N S 8.146  58.594 45.246 -8.326  -0.215 0.170  C44  G3I 5  
G3I O44  O44  O 0 1 N N N 8.714  57.742 46.253 -9.498  -0.357 0.975  O44  G3I 6  
G3I C54  C54  C 0 1 N N R 8.304  57.949 43.840 -7.122  -0.798 0.914  C54  G3I 7  
G3I C64  C64  C 0 1 N N N 7.198  56.902 43.676 -7.340  -2.295 1.145  C64  G3I 8  
G3I O64  O64  O 0 1 N N N 7.645  55.649 44.214 -6.272  -2.814 1.940  O64  G3I 9  
G3I O54  O54  O 0 1 N N N 8.241  58.861 42.680 -5.941  -0.604 0.133  O54  G3I 10 
G3I C14  C14  C 0 1 N N S 9.019  60.069 42.855 -5.629  0.768  -0.122 C14  G3I 11 
G3I O43  O43  O 0 1 N N N 8.987  60.940 41.690 -4.423  0.848  -0.883 O43  G3I 12 
G3I C43  C43  C 0 1 N N S 10.152 60.897 40.805 -3.265  0.374  -0.192 C43  G3I 13 
G3I C53  C53  C 0 1 N N R 11.544 61.253 41.413 -2.029  1.130  -0.686 C53  G3I 14 
G3I O53  O53  O 0 1 N N N 12.525 61.216 40.353 -0.866  0.614  -0.035 O53  G3I 15 
G3I C63  C63  C 0 1 N N N 12.115 60.309 42.478 -2.177  2.618  -0.362 C63  G3I 16 
G3I O63  O63  O 0 1 N N N 12.457 59.054 41.864 -1.079  3.339  -0.924 O63  G3I 17 
G3I C33  C33  C 0 1 N N R 9.824  61.939 39.706 -3.083  -1.122 -0.466 C33  G3I 18 
G3I O33  O33  O 0 1 N N N 8.681  61.512 38.950 -4.200  -1.844 0.058  O33  G3I 19 
G3I C23  C23  C 0 1 N N R 10.986 62.202 38.728 -1.798  -1.602 0.216  C23  G3I 20 
G3I O23  O23  O 0 1 N N N 10.753 63.428 38.032 -1.579  -2.980 -0.093 O23  G3I 21 
G3I C13  C13  C 0 1 N N S 12.342 62.290 39.425 -0.618  -0.770 -0.294 C13  G3I 22 
G3I O42  O42  O 0 1 N N N 13.282 62.078 38.381 0.576   -1.174 0.379  O42  G3I 23 
G3I C42  C42  C 0 1 N N S 14.577 62.616 38.754 1.760   -0.535 -0.103 C42  G3I 24 
G3I C52  C52  C 0 1 N N R 14.899 63.736 37.748 2.957   -1.473 0.076  C52  G3I 25 
G3I O52  O52  O 0 1 N N N 16.297 64.093 37.840 4.148   -0.810 -0.353 O52  G3I 26 
G3I C62  C62  C 0 1 N N N 14.025 65.003 37.996 2.745   -2.736 -0.761 C62  G3I 27 
G3I O62  O62  O 0 1 N N N 14.455 65.746 39.155 3.804   -3.660 -0.504 O62  G3I 28 
G3I C32  C32  C 0 1 N N R 15.603 61.458 38.736 2.006   0.752  0.690  C32  G3I 29 
G3I O32  O32  O 0 1 N N N 15.432 60.644 39.897 0.928   1.663  0.470  O32  G3I 30 
G3I C22  C22  C 0 1 N N R 17.045 61.965 38.683 3.318   1.387  0.218  C22  G3I 31 
G3I O22  O22  O 0 1 N N N 17.944 60.886 38.411 3.595   2.550  1.001  O22  G3I 32 
G3I C12  C12  C 0 1 N N R 17.136 62.981 37.548 4.454   0.375  0.385  C12  G3I 33 
G3I O41  O41  O 0 1 N N N 18.476 63.453 37.588 5.672   0.940  -0.106 O41  G3I 34 
G3I C41  C41  C 0 1 N N R 18.851 64.332 36.488 6.821   0.118  0.105  C41  G3I 35 
G3I C31  C31  C 0 1 N N R 19.845 65.360 37.042 7.012   -0.812 -1.096 C31  G3I 36 
G3I O31  O31  O 0 1 N N N 19.180 66.047 38.085 5.883   -1.679 -1.213 O31  G3I 37 
G3I C21  C21  C 0 1 N N N 20.303 66.423 35.999 8.279   -1.647 -0.892 C21  G3I 38 
G3I N11  N11  N 0 1 N N N 20.724 65.769 34.732 9.437   -0.755 -0.751 N11  G3I 39 
G3I C71  C71  C 0 1 N N N 19.812 64.713 34.196 9.297   0.114  0.424  C71  G3I 40 
G3I C51  C51  C 0 1 N N R 19.505 63.654 35.277 8.061   1.002  0.259  C51  G3I 41 
G3I C61  C61  C 0 1 N N N 18.655 62.516 34.679 7.904   1.892  1.494  C61  G3I 42 
G3I O61  O61  O 0 1 N N N 17.401 62.984 34.160 9.007   2.798  1.572  O61  G3I 43 
G3I HO24 HO24 H 0 0 N N N 9.183  62.347 45.105 -5.678  2.964  -1.611 HO24 G3I 44 
G3I H24  H24  H 0 1 N N N 7.393  60.936 43.986 -6.880  0.916  -1.872 H24  G3I 45 
G3I H34  H34  H 0 1 N N N 9.882  59.869 45.419 -7.986  1.810  0.832  H34  G3I 46 
G3I HO34 HO34 H 0 0 N N N 8.193  60.051 47.217 -9.063  2.740  -1.089 HO34 G3I 47 
G3I H44  H44  H 0 1 N N N 7.065  58.714 45.413 -8.465  -0.746 -0.772 H44  G3I 48 
G3I HO44 HO44 H 0 0 N N N 8.839  56.870 45.897 -10.301 -0.004 0.566  HO44 G3I 49 
G3I H54  H54  H 0 1 N N N 9.324  57.538 43.826 -7.009  -0.294 1.874  H54  G3I 50 
G3I H64  H64  H 0 1 N N N 6.297  57.232 44.214 -8.286  -2.448 1.663  H64  G3I 51 
G3I H64A H64A H 0 0 N N N 6.962  56.781 42.608 -7.363  -2.811 0.185  H64A G3I 52 
G3I HO64 HO64 H 0 0 N N N 7.744  55.019 43.510 -6.345  -3.760 2.126  HO64 G3I 53 
G3I H14  H14  H 0 1 N N N 10.072 59.782 42.994 -5.497  1.292  0.825  H14  G3I 54 
G3I H43  H43  H 0 1 N N N 10.282 59.853 40.485 -3.388  0.537  0.878  H43  G3I 55 
G3I H53  H53  H 0 1 N N N 11.366 62.226 41.893 -1.930  1.000  -1.764 H53  G3I 56 
G3I H63  H63  H 0 1 N N N 13.015 60.758 42.924 -3.111  2.990  -0.783 H63  G3I 57 
G3I H63A H63A H 0 0 N N N 11.364 60.143 43.265 -2.186  2.755  0.720  H63A G3I 58 
G3I HO63 HO63 H 0 0 N N N 12.532 59.171 40.924 -1.108  4.291  -0.758 HO63 G3I 59 
G3I H33  H33  H 0 1 N N N 9.625  62.881 40.238 -3.012  -1.290 -1.541 H33  G3I 60 
G3I HO33 HO33 H 0 0 N N N 7.934  61.418 39.530 -4.151  -2.799 -0.081 HO33 G3I 61 
G3I H23  H23  H 0 1 N N N 11.019 61.348 38.036 -1.891  -1.481 1.295  H23  G3I 62 
G3I HO23 HO23 H 0 0 N N N 10.701 64.142 38.656 -0.781  -3.351 0.307  HO23 G3I 63 
G3I H13  H13  H 0 1 N N N 12.440 63.243 39.965 -0.501  -0.924 -1.366 H13  G3I 64 
G3I H42  H42  H 0 1 N N N 14.599 63.046 39.766 1.640   -0.295 -1.159 H42  G3I 65 
G3I H52  H52  H 0 1 N N N 14.672 63.354 36.741 3.051   -1.745 1.128  H52  G3I 66 
G3I H62  H62  H 0 1 N N N 14.099 65.657 37.114 1.792   -3.192 -0.495 H62  G3I 67 
G3I H62A H62A H 0 0 N N N 12.991 64.671 38.171 2.740   -2.473 -1.819 H62A G3I 68 
G3I HO62 HO62 H 0 0 N N N 14.550 65.155 39.893 3.735   -4.486 -1.002 HO62 G3I 69 
G3I H32  H32  H 0 1 N N N 15.418 60.870 37.825 2.074   0.518  1.753  H32  G3I 70 
G3I HO32 HO32 H 0 0 N N N 15.394 59.730 39.641 1.018   2.502  0.943  HO32 G3I 71 
G3I H22  H22  H 0 1 N N N 17.318 62.416 39.648 3.229   1.667  -0.831 H22  G3I 72 
G3I HO22 HO22 H 0 0 N N N 18.143 60.866 37.482 4.413   3.003  0.756  HO22 G3I 73 
G3I H12  H12  H 0 1 N N N 16.846 62.539 36.583 4.568   0.127  1.440  H12  G3I 74 
G3I H41  H41  H 0 1 N N N 17.911 64.763 36.112 6.682   -0.477 1.008  H41  G3I 75 
G3I H31  H31  H 0 1 N N N 20.746 64.816 37.363 7.110   -0.217 -2.004 H31  G3I 76 
G3I HO31 HO31 H 0 0 N N N 19.031 65.453 38.811 5.937   -2.297 -1.955 HO31 G3I 77 
G3I H21  H21  H 0 1 N N N 19.466 67.105 35.790 8.174   -2.252 0.009  H21  G3I 78 
G3I H21A H21A H 0 0 N N N 21.158 66.979 36.412 8.426   -2.300 -1.753 H21A G3I 79 
G3I HN11 HN11 H 0 0 N N N 20.790 66.485 34.037 10.296  -1.283 -0.710 HN11 G3I 80 
G3I H71  H71  H 0 1 N N N 18.870 65.182 33.875 9.187   -0.499 1.319  H71  G3I 81 
G3I H71A H71A H 0 0 N N N 20.305 64.218 33.346 10.184  0.741  0.520  H71A G3I 82 
G3I H51  H51  H 0 1 N N N 20.436 63.189 35.634 8.177   1.625  -0.627 H51  G3I 83 
G3I H61  H61  H 0 1 N N N 19.221 62.052 33.858 6.975   2.457  1.418  H61  G3I 84 
G3I H61A H61A H 0 0 N N N 18.440 61.798 35.484 7.880   1.271  2.389  H61A G3I 85 
G3I HO61 HO61 H 0 0 N N N 16.782 63.087 34.873 8.973   3.395  2.332  HO61 G3I 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G3I O24 C24  SING N N 1  
G3I C24 C34  SING N N 2  
G3I C24 C14  SING N N 3  
G3I C34 O34  SING N N 4  
G3I C34 C44  SING N N 5  
G3I C44 O44  SING N N 6  
G3I C44 C54  SING N N 7  
G3I C54 C64  SING N N 8  
G3I C54 O54  SING N N 9  
G3I C64 O64  SING N N 10 
G3I O54 C14  SING N N 11 
G3I C14 O43  SING N N 12 
G3I O43 C43  SING N N 13 
G3I C43 C53  SING N N 14 
G3I C43 C33  SING N N 15 
G3I C53 O53  SING N N 16 
G3I C53 C63  SING N N 17 
G3I O53 C13  SING N N 18 
G3I C63 O63  SING N N 19 
G3I C33 O33  SING N N 20 
G3I C33 C23  SING N N 21 
G3I C23 O23  SING N N 22 
G3I C23 C13  SING N N 23 
G3I C13 O42  SING N N 24 
G3I O42 C42  SING N N 25 
G3I C42 C52  SING N N 26 
G3I C42 C32  SING N N 27 
G3I C52 O52  SING N N 28 
G3I C52 C62  SING N N 29 
G3I O52 C12  SING N N 30 
G3I C62 O62  SING N N 31 
G3I C32 O32  SING N N 32 
G3I C32 C22  SING N N 33 
G3I C22 O22  SING N N 34 
G3I C22 C12  SING N N 35 
G3I C12 O41  SING N N 36 
G3I O41 C41  SING N N 37 
G3I C41 C31  SING N N 38 
G3I C41 C51  SING N N 39 
G3I C31 O31  SING N N 40 
G3I C31 C21  SING N N 41 
G3I C21 N11  SING N N 42 
G3I N11 C71  SING N N 43 
G3I C71 C51  SING N N 44 
G3I C51 C61  SING N N 45 
G3I C61 O61  SING N N 46 
G3I O24 HO24 SING N N 47 
G3I C24 H24  SING N N 48 
G3I C34 H34  SING N N 49 
G3I O34 HO34 SING N N 50 
G3I C44 H44  SING N N 51 
G3I O44 HO44 SING N N 52 
G3I C54 H54  SING N N 53 
G3I C64 H64  SING N N 54 
G3I C64 H64A SING N N 55 
G3I O64 HO64 SING N N 56 
G3I C14 H14  SING N N 57 
G3I C43 H43  SING N N 58 
G3I C53 H53  SING N N 59 
G3I C63 H63  SING N N 60 
G3I C63 H63A SING N N 61 
G3I O63 HO63 SING N N 62 
G3I C33 H33  SING N N 63 
G3I O33 HO33 SING N N 64 
G3I C23 H23  SING N N 65 
G3I O23 HO23 SING N N 66 
G3I C13 H13  SING N N 67 
G3I C42 H42  SING N N 68 
G3I C52 H52  SING N N 69 
G3I C62 H62  SING N N 70 
G3I C62 H62A SING N N 71 
G3I O62 HO62 SING N N 72 
G3I C32 H32  SING N N 73 
G3I O32 HO32 SING N N 74 
G3I C22 H22  SING N N 75 
G3I O22 HO22 SING N N 76 
G3I C12 H12  SING N N 77 
G3I C41 H41  SING N N 78 
G3I C31 H31  SING N N 79 
G3I O31 HO31 SING N N 80 
G3I C21 H21  SING N N 81 
G3I C21 H21A SING N N 82 
G3I N11 HN11 SING N N 83 
G3I C71 H71  SING N N 84 
G3I C71 H71A SING N N 85 
G3I C51 H51  SING N N 86 
G3I C61 H61  SING N N 87 
G3I C61 H61A SING N N 88 
G3I O61 HO61 SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G3I SMILES           ACDLabs              10.04 "O(C2C(OC(OC1C(CO)CNCC1O)C(O)C2O)CO)C4OC(C(OC3OC(CO)C(O)C(O)C3O)C(O)C4O)CO"                                                                                                                                                                        
G3I SMILES_CANONICAL CACTVS               3.341 "OC[C@H]1CNC[C@@H](O)[C@@H]1O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2O"                                                                                          
G3I SMILES           CACTVS               3.341 "OC[CH]1CNC[CH](O)[CH]1O[CH]2O[CH](CO)[CH](O[CH]3O[CH](CO)[CH](O[CH]4O[CH](CO)[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O)[CH](O)[CH]2O"                                                                                                                    
G3I SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H]([C@@H](CN1)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)O)O)O)O)CO"                                                                                
G3I SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(C(CN1)O)OC2C(C(C(C(O2)CO)OC3C(C(C(C(O3)CO)OC4C(C(C(C(O4)CO)O)O)O)O)O)O)O)CO"                                                                                                                                                                
G3I InChI            InChI                1.03  "InChI=1S/C24H43NO18/c26-3-7-1-25-2-8(30)19(7)41-23-17(36)14(33)21(10(5-28)39-23)43-24-18(37)15(34)20(11(6-29)40-24)42-22-16(35)13(32)12(31)9(4-27)38-22/h7-37H,1-6H2/t7-,8-,9-,10-,11-,12-,13+,14-,15-,16-,17-,18-,19-,20-,21-,22+,23+,24+/m1/s1" 
G3I InChIKey         InChI                1.03  WWLNURYAWFMUKB-QPKZCLDCSA-N                                                                                                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
G3I "SYSTEMATIC NAME" ACDLabs              10.04 "(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranoside"                                                                                                             
G3I "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6S)-6-[(2R,3S,4R,5R,6R)-4,5-dihydroxy-6-[(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl]oxy-2-(hydroxymethyl)oxan-3-yl]oxy-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G3I "Create component"  2008-04-17 RCSB 
G3I "Modify descriptor" 2011-06-04 RCSB 
G3I "Modify synonyms"   2020-05-27 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 G3I "Cellotetraose-like isofagomine" ? ? 
2 G3I "Cellotriosyl isofagomine"       ? ? 
# 
