data_G2I
# 
_chem_comp.id                                    G2I 
_chem_comp.name                                  "(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl 4-O-beta-D-glucopyranosyl-beta-D-glucopyranoside" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H33 N O13" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Cellotriose-like isofagomine; Cellobiosyl isofagomine" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-04-24 
_chem_comp.pdbx_modified_date                    2020-05-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        471.454 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G2I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3CUH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G2I O61  O61  O 0 1 N N N 17.467 63.327 34.426 6.603  2.841  0.914  O61  G2I 1  
G2I C61  C61  C 0 1 N N N 18.743 62.914 34.854 5.471  1.975  1.026  C61  G2I 2  
G2I C51  C51  C 0 1 N N R 19.553 64.070 35.483 5.561  0.877  -0.036 C51  G2I 3  
G2I C71  C71  C 0 1 N N N 19.838 65.160 34.450 6.777  -0.008 0.247  C71  G2I 4  
G2I N11  N11  N 0 1 N N N 20.825 66.096 34.998 6.852  -1.074 -0.760 N11  G2I 5  
G2I C21  C21  C 0 1 N N N 20.315 66.748 36.204 5.665  -1.938 -0.708 C21  G2I 6  
G2I C31  C31  C 0 1 N N R 19.823 65.779 37.277 4.416  -1.110 -1.019 C31  G2I 7  
G2I O31  O31  O 0 1 N N N 19.167 66.505 38.320 3.260  -1.946 -0.948 O31  G2I 8  
G2I C41  C41  C 0 1 N N R 18.891 64.700 36.717 4.292  0.022  0.005  C41  G2I 9  
G2I O41  O41  O 0 1 N N N 18.594 63.842 37.802 3.159  0.832  -0.314 O41  G2I 10 
G2I C12  C12  C 0 1 N N R 17.237 63.409 37.841 1.946  0.406  0.310  C12  G2I 11 
G2I C22  C22  C 0 1 N N R 17.075 62.320 38.900 0.833  1.411  0.001  C22  G2I 12 
G2I O22  O22  O 0 1 N N N 17.970 61.263 38.622 1.173  2.685  0.553  O22  G2I 13 
G2I C32  C32  C 0 1 N N R 15.626 61.804 38.984 -0.477 0.918  0.622  C32  G2I 14 
G2I O32  O32  O 0 1 N N N 15.496 60.955 40.106 -1.537 1.812  0.277  O32  G2I 15 
G2I O52  O52  O 0 1 N N N 16.363 64.462 38.165 1.577  -0.880 -0.192 O52  G2I 16 
G2I C52  C52  C 0 1 N N R 14.995 64.073 38.085 0.385  -1.413 0.388  C52  G2I 17 
G2I C62  C62  C 0 1 N N N 14.122 65.307 38.317 0.106  -2.797 -0.201 C62  G2I 18 
G2I O62  O62  O 0 1 N N N 14.478 65.960 39.517 1.148  -3.697 0.182  O62  G2I 19 
G2I C42  C42  C 0 1 N N S 14.622 62.945 39.075 -0.790 -0.481 0.082  C42  G2I 20 
G2I O42  O42  O 0 1 N N N 13.267 62.484 38.954 -1.972 -0.982 0.710  O42  G2I 21 
G2I C13  C13  C 0 1 N N S 12.679 62.207 40.249 -3.180 -0.657 0.018  C13  G2I 22 
G2I C23  C23  C 0 1 N N R 11.272 62.803 40.473 -4.363 -1.344 0.705  C23  G2I 23 
G2I O23  O23  O 0 1 N N N 11.217 63.493 41.719 -4.198 -2.762 0.634  O23  G2I 24 
G2I C33  C33  C 0 1 N N S 10.154 61.802 40.466 -5.659 -0.943 -0.005 C33  G2I 25 
G2I O33  O33  O 0 1 N N N 8.941  62.411 39.999 -6.775 -1.521 0.675  O33  G2I 26 
G2I C43  C43  C 0 1 N N S 10.437 60.303 40.352 -5.785 0.584  0.009  C43  G2I 27 
G2I O43  O43  O 0 1 N N N 9.778  59.744 41.434 -6.955 0.973  -0.714 O43  G2I 28 
G2I O53  O53  O 0 1 N N N 12.872 60.924 40.599 -3.375 0.758  0.039  O53  G2I 29 
G2I C53  C53  C 0 1 N N R 11.915 59.924 40.373 -4.547 1.196  -0.651 C53  G2I 30 
G2I C63  C63  C 0 1 N N N 12.364 58.605 39.721 -4.637 2.722  -0.587 C63  G2I 31 
G2I O63  O63  O 0 1 N N N 13.753 58.500 39.567 -3.542 3.295  -1.304 O63  G2I 32 
G2I HO61 HO61 H 0 0 N N N 16.895 63.420 35.179 6.612  3.562  1.558  HO61 G2I 33 
G2I H61  H61  H 0 1 N N N 18.620 62.123 35.608 5.457  1.522  2.017  H61  G2I 34 
G2I H61A H61A H 0 0 N N N 19.295 62.554 33.973 4.557  2.551  0.877  H61A G2I 35 
G2I H51  H51  H 0 1 N N N 20.493 63.611 35.824 5.663  1.332  -1.021 H51  G2I 36 
G2I H71  H71  H 0 1 N N N 20.234 64.703 33.531 7.683  0.596  0.204  H71  G2I 37 
G2I H71A H71A H 0 0 N N N 18.908 65.699 34.215 6.681  -0.451 1.238  H71A G2I 38 
G2I HN11 HN11 H 0 0 N N N 21.658 65.593 35.228 6.979  -0.691 -1.685 HN11 G2I 39 
G2I H21  H21  H 0 1 N N N 21.130 67.347 36.636 5.764  -2.736 -1.444 H21  G2I 40 
G2I H21A H21A H 0 0 N N N 19.449 67.353 35.898 5.575  -2.372 0.288  H21A G2I 41 
G2I H31  H31  H 0 1 N N N 20.706 65.260 37.679 4.499  -0.688 -2.021 H31  G2I 42 
G2I HO31 HO31 H 0 0 N N N 19.022 65.931 39.063 3.272  -2.688 -1.569 HO31 G2I 43 
G2I H41  H41  H 0 1 N N N 17.926 65.063 36.334 4.170  -0.401 1.002  H41  G2I 44 
G2I H12  H12  H 0 1 N N N 16.986 63.029 36.840 2.093  0.347  1.388  H12  G2I 45 
G2I H22  H22  H 0 1 N N N 17.311 62.755 39.882 0.714  1.502  -1.079 H22  G2I 46 
G2I HO22 HO22 H 0 0 N N N 18.171 61.254 37.694 1.996  3.056  0.207  HO22 G2I 47 
G2I H32  H32  H 0 1 N N N 15.408 61.246 38.062 -0.373 0.876  1.707  H32  G2I 48 
G2I HO32 HO32 H 0 0 N N N 15.467 60.050 39.817 -1.401 2.719  0.582  HO32 G2I 49 
G2I H52  H52  H 0 1 N N N 14.820 63.658 37.081 0.512  -1.496 1.467  H52  G2I 50 
G2I H62  H62  H 0 1 N N N 14.258 66.004 37.477 -0.849 -3.166 0.174  H62  G2I 51 
G2I H62A H62A H 0 0 N N N 13.072 64.986 38.390 0.067  -2.728 -1.289 H62A G2I 52 
G2I HO62 HO62 H 0 0 N N N 14.558 65.320 40.215 1.036  -4.595 -0.157 HO62 G2I 53 
G2I H42  H42  H 0 1 N N N 14.677 63.383 40.083 -0.943 -0.429 -0.996 H42  G2I 54 
G2I H13  H13  H 0 1 N N N 13.235 62.788 41.000 -3.111 -0.999 -1.015 H13  G2I 55 
G2I H23  H23  H 0 1 N N N 11.121 63.476 39.616 -4.407 -1.034 1.749  H23  G2I 56 
G2I HO23 HO23 H 0 0 N N N 11.205 62.863 42.430 -3.393 -3.086 1.061  HO23 G2I 57 
G2I H33  H33  H 0 1 N N N 9.931  61.510 41.503 -5.636 -1.298 -1.035 H33  G2I 58 
G2I HO33 HO33 H 0 0 N N N 8.351  62.546 40.732 -6.757 -2.487 0.710  HO33 G2I 59 
G2I H43  H43  H 0 1 N N N 10.091 59.935 39.375 -5.860 0.933  1.039  H43  G2I 60 
G2I HO43 HO43 H 0 0 N N N 10.392 59.616 42.148 -7.778 0.616  -0.353 HO43 G2I 61 
G2I H53  H53  H 0 1 N N N 11.894 59.537 41.402 -4.496 0.878  -1.692 H53  G2I 62 
G2I H63  H63  H 0 1 N N N 12.027 57.775 40.360 -5.576 3.050  -1.034 H63  G2I 63 
G2I H63A H63A H 0 0 N N N 11.922 58.573 38.714 -4.599 3.045  0.454  H63A G2I 64 
G2I HO63 HO63 H 0 0 N N N 13.969 58.476 38.642 -3.535 4.262  -1.306 HO63 G2I 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G2I O61 C61  SING N N 1  
G2I C61 C51  SING N N 2  
G2I C51 C71  SING N N 3  
G2I C51 C41  SING N N 4  
G2I C71 N11  SING N N 5  
G2I N11 C21  SING N N 6  
G2I C21 C31  SING N N 7  
G2I C31 O31  SING N N 8  
G2I C31 C41  SING N N 9  
G2I C41 O41  SING N N 10 
G2I O41 C12  SING N N 11 
G2I C12 C22  SING N N 12 
G2I C12 O52  SING N N 13 
G2I C22 O22  SING N N 14 
G2I C22 C32  SING N N 15 
G2I C32 O32  SING N N 16 
G2I C32 C42  SING N N 17 
G2I O52 C52  SING N N 18 
G2I C52 C62  SING N N 19 
G2I C52 C42  SING N N 20 
G2I C62 O62  SING N N 21 
G2I C42 O42  SING N N 22 
G2I O42 C13  SING N N 23 
G2I C13 C23  SING N N 24 
G2I C13 O53  SING N N 25 
G2I C23 O23  SING N N 26 
G2I C23 C33  SING N N 27 
G2I C33 O33  SING N N 28 
G2I C33 C43  SING N N 29 
G2I C43 O43  SING N N 30 
G2I C43 C53  SING N N 31 
G2I O53 C53  SING N N 32 
G2I C53 C63  SING N N 33 
G2I C63 O63  SING N N 34 
G2I O61 HO61 SING N N 35 
G2I C61 H61  SING N N 36 
G2I C61 H61A SING N N 37 
G2I C51 H51  SING N N 38 
G2I C71 H71  SING N N 39 
G2I C71 H71A SING N N 40 
G2I N11 HN11 SING N N 41 
G2I C21 H21  SING N N 42 
G2I C21 H21A SING N N 43 
G2I C31 H31  SING N N 44 
G2I O31 HO31 SING N N 45 
G2I C41 H41  SING N N 46 
G2I C12 H12  SING N N 47 
G2I C22 H22  SING N N 48 
G2I O22 HO22 SING N N 49 
G2I C32 H32  SING N N 50 
G2I O32 HO32 SING N N 51 
G2I C52 H52  SING N N 52 
G2I C62 H62  SING N N 53 
G2I C62 H62A SING N N 54 
G2I O62 HO62 SING N N 55 
G2I C42 H42  SING N N 56 
G2I C13 H13  SING N N 57 
G2I C23 H23  SING N N 58 
G2I O23 HO23 SING N N 59 
G2I C33 H33  SING N N 60 
G2I O33 HO33 SING N N 61 
G2I C43 H43  SING N N 62 
G2I O43 HO43 SING N N 63 
G2I C53 H53  SING N N 64 
G2I C63 H63  SING N N 65 
G2I C63 H63A SING N N 66 
G2I O63 HO63 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G2I SMILES           ACDLabs              10.04 "O(C1C(O)CNCC1CO)C3OC(C(OC2OC(CO)C(O)C(O)C2O)C(O)C3O)CO"                                                                                                                                  
G2I SMILES_CANONICAL CACTVS               3.341 "OC[C@H]1CNC[C@@H](O)[C@@H]1O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2O"                                                                          
G2I SMILES           CACTVS               3.341 "OC[CH]1CNC[CH](O)[CH]1O[CH]2O[CH](CO)[CH](O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH](O)[CH]2O"                                                                                             
G2I SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H]([C@@H](CN1)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O)CO"                                                                  
G2I SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(C(CN1)O)OC2C(C(C(C(O2)CO)OC3C(C(C(C(O3)CO)O)O)O)O)O)CO"                                                                                                                            
G2I InChI            InChI                1.03  "InChI=1S/C18H33NO13/c20-3-6-1-19-2-7(23)15(6)31-18-14(28)12(26)16(9(5-22)30-18)32-17-13(27)11(25)10(24)8(4-21)29-17/h6-28H,1-5H2/t6-,7-,8-,9-,10-,11+,12-,13-,14-,15-,16-,17+,18+/m1/s1" 
G2I InChIKey         InChI                1.03  ZIMIYDWQNDRGNF-IONZOCAKSA-N                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
G2I "SYSTEMATIC NAME" ACDLabs              10.04 "(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl 4-O-beta-D-glucopyranosyl-beta-D-glucopyranoside"                                                                            
G2I "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6R)-4,5-dihydroxy-6-[(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl]oxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G2I "Create component"  2008-04-24 RCSB 
G2I "Modify descriptor" 2011-06-04 RCSB 
G2I "Modify synonyms"   2020-05-27 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 G2I "Cellotriose-like isofagomine" ? ? 
2 G2I "Cellobiosyl isofagomine"      ? ? 
# 
