data_EDI
# 
_chem_comp.id                                    EDI 
_chem_comp.name                                  "2'-deoxy-1-(2-iodoethyl)inosine" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C12 H16 I N4 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-05-19 
_chem_comp.pdbx_modified_date                    2014-06-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        486.156 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EDI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2MH6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EDI P      P      P 0 1 N N N 7.485  4.709  -2.121 7.832  0.873  0.169  P      EDI 1  
EDI OP1    OP1    O 0 1 N N N 8.509  5.444  -2.907 8.849  -0.096 -0.298 OP1    EDI 2  
EDI OP2    OP2    O 0 1 N N N 7.906  3.878  -0.965 7.563  1.965  -0.983 OP2    EDI 3  
EDI "O5'"  "O5'"  O 0 1 N N N 6.408  5.765  -1.606 6.463  0.095  0.501  "O5'"  EDI 4  
EDI "C5'"  "C5'"  C 0 1 N N N 5.870  6.757  -2.484 5.795  -0.744 -0.444 "C5'"  EDI 5  
EDI "C4'"  "C4'"  C 0 1 N N R 4.651  7.400  -1.866 4.531  -1.325 0.193  "C4'"  EDI 6  
EDI "O4'"  "O4'"  O 0 1 N N N 3.676  6.373  -1.570 3.570  -0.281 0.459  "O4'"  EDI 7  
EDI "C3'"  "C3'"  C 0 1 N N S 4.898  8.131  -0.546 3.792  -2.251 -0.806 "C3'"  EDI 8  
EDI "O3'"  "O3'"  O 0 1 N N N 4.041  9.274  -0.444 4.313  -3.581 -0.749 "O3'"  EDI 9  
EDI "C2'"  "C2'"  C 0 1 N N N 4.554  7.094  0.501  2.338  -2.204 -0.277 "C2'"  EDI 10 
EDI "C1'"  "C1'"  C 0 1 N N R 3.501  6.234  -0.167 2.283  -0.912 0.561  "C1'"  EDI 11 
EDI N9     N9     N 0 1 Y N N 3.630  4.822  0.166  1.247  -0.020 0.032  N9     EDI 12 
EDI C8     C8     C 0 1 Y N N 4.798  4.126  0.321  1.434  0.989  -0.865 C8     EDI 13 
EDI N7     N7     N 0 1 Y N N 4.614  2.871  0.625  0.298  1.575  -1.112 N7     EDI 14 
EDI C5     C5     C 0 1 Y N N 3.234  2.732  0.674  -0.679 0.979  -0.390 C5     EDI 15 
EDI C6     C6     C 0 1 N N N 2.435  1.597  0.956  -2.075 1.185  -0.255 C6     EDI 16 
EDI O6     O6     O 0 1 N N N 2.802  0.448  1.229  -2.641 2.066  -0.878 O6     EDI 17 
EDI N1     N1     N 0 1 N N N 1.075  1.901  0.897  -2.761 0.376  0.584  N1     EDI 18 
EDI C2     C2     C 0 1 N N N 0.560  3.140  0.606  -2.120 -0.601 1.273  C2     EDI 19 
EDI N3     N3     N 0 1 N N N 1.295  4.204  0.341  -0.837 -0.803 1.160  N3     EDI 20 
EDI C4     C4     C 0 1 Y N N 2.613  3.930  0.392  -0.084 -0.050 0.345  C4     EDI 21 
EDI C11    C11    C 0 1 N N N 0.057  -0.034 2.411  -4.948 -0.301 -0.276 C11    EDI 22 
EDI C12    C12    C 0 1 N N N 0.123  0.825  1.160  -4.205 0.557  0.750  C12    EDI 23 
EDI OP3    OP3    O 0 1 N Y N 6.666  3.789  -3.155 8.365  1.612  1.496  OP3    EDI 24 
EDI H1     H1     H 0 1 N N N 8.850  3.926  -0.867 6.906  2.634  -0.745 H1     EDI 25 
EDI "H5'"  "H5'"  H 0 1 N N N 5.587  6.284  -3.436 5.523  -0.158 -1.321 "H5'"  EDI 26 
EDI "H5''" "H5''" H 0 0 N N N 6.632  7.528  -2.670 6.459  -1.557 -0.741 "H5''" EDI 27 
EDI "H4'"  "H4'"  H 0 1 N N N 4.226  8.115  -2.586 4.777  -1.863 1.109  "H4'"  EDI 28 
EDI "H3'"  "H3'"  H 0 1 N N N 5.958  8.415  -0.466 3.851  -1.855 -1.820 "H3'"  EDI 29 
EDI H3     H3     H 0 1 N Y N 4.203  9.720  0.379  3.882  -4.198 -1.356 H3     EDI 30 
EDI "H2'"  "H2'"  H 0 1 N N N 5.439  6.495  0.764  1.632  -2.152 -1.106 "H2'"  EDI 31 
EDI "H2''" "H2''" H 0 0 N N N 4.152  7.571  1.407  2.130  -3.074 0.346  "H2''" EDI 32 
EDI "H1'"  "H1'"  H 0 1 N N N 2.505  6.595  0.129  2.068  -1.152 1.602  "H1'"  EDI 33 
EDI H8     H8     H 0 1 N N N 5.775  4.571  0.203  2.382  1.261  -1.306 H8     EDI 34 
EDI H2     H2     H 0 1 N N N -0.514 3.251  0.593  -2.691 -1.233 1.936  H2     EDI 35 
EDI H11    H11    H 0 1 N N N 0.943  -0.328 2.994  -4.657 0.003  -1.282 H11    EDI 36 
EDI H12    H12    H 0 1 N N N -0.842 -0.125 3.039  -4.693 -1.350 -0.125 H12    EDI 37 
EDI H15    H15    H 0 1 N N N -0.869 1.295  1.082  -4.496 0.254  1.756  H15    EDI 38 
EDI H14    H14    H 0 1 N N N 0.258  0.114  0.331  -4.460 1.606  0.599  H14    EDI 39 
EDI H5     H5     H 0 1 N Y N 7.010  3.914  -4.032 9.189  2.102  1.369  H5     EDI 40 
EDI I1     I1     I 0 1 N Y N ?      ?      ?      -7.079 -0.034 -0.031 I1     EDI 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EDI OP1   P      DOUB N N 1  
EDI "C5'" "C4'"  SING N N 2  
EDI "C5'" "O5'"  SING N N 3  
EDI P     "O5'"  SING N N 4  
EDI P     OP2    SING N N 5  
EDI "C4'" "O4'"  SING N N 6  
EDI "C4'" "C3'"  SING N N 7  
EDI "O4'" "C1'"  SING N N 8  
EDI "C3'" "O3'"  SING N N 9  
EDI "C3'" "C2'"  SING N N 10 
EDI "C1'" N9     SING N N 11 
EDI "C1'" "C2'"  SING N N 12 
EDI N9    C8     SING Y N 13 
EDI N9    C4     SING Y N 14 
EDI C8    N7     DOUB Y N 15 
EDI N3    C4     SING N N 16 
EDI N3    C2     DOUB N N 17 
EDI C4    C5     DOUB Y N 18 
EDI C2    N1     SING N N 19 
EDI N7    C5     SING Y N 20 
EDI C5    C6     SING N N 21 
EDI N1    C6     SING N N 22 
EDI N1    C12    SING N N 23 
EDI C6    O6     DOUB N N 24 
EDI C12   C11    SING N N 25 
EDI P     OP3    SING N N 26 
EDI OP2   H1     SING N N 27 
EDI "C5'" "H5'"  SING N N 28 
EDI "C5'" "H5''" SING N N 29 
EDI "C4'" "H4'"  SING N N 30 
EDI "C3'" "H3'"  SING N N 31 
EDI "O3'" H3     SING N N 32 
EDI "C2'" "H2'"  SING N N 33 
EDI "C2'" "H2''" SING N N 34 
EDI "C1'" "H1'"  SING N N 35 
EDI C8    H8     SING N N 36 
EDI C2    H2     SING N N 37 
EDI C11   H11    SING N N 38 
EDI C11   H12    SING N N 39 
EDI C12   H15    SING N N 40 
EDI C12   H14    SING N N 41 
EDI OP3   H5     SING N N 42 
EDI C11   I1     SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EDI SMILES           ACDLabs              12.01 "O=P(O)(O)OCC3OC(n2cnc1c2N=CN(C1=O)CCI)CC3O"                                                                                                    
EDI InChI            InChI                1.03  "InChI=1S/C12H16IN4O7P/c13-1-2-16-5-15-11-10(12(16)19)14-6-17(11)9-3-7(18)8(24-9)4-23-25(20,21)22/h5-9,18H,1-4H2,(H2,20,21,22)/t7-,8+,9+/m0/s1" 
EDI InChIKey         InChI                1.03  VZODOTFJXVCKSN-DJLDLDEBSA-N                                                                                                                     
EDI SMILES_CANONICAL CACTVS               3.385 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3C(=O)N(CCI)C=Nc23"                                                                                  
EDI SMILES           CACTVS               3.385 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)N(CCI)C=Nc23"                                                                                       
EDI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N=CN(C2=O)CCI"                                                                                   
EDI SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)O)O)N=CN(C2=O)CCI"                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
EDI "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxy-1-(2-iodoethyl)inosine 5'-(dihydrogen phosphate)
;
EDI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-5-[1-(2-iodanylethyl)-6-oxidanylidene-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EDI "Create component" 2014-05-19 RCSB 
EDI "Initial release"  2014-07-02 RCSB 
# 
