data_E3I
# 
_chem_comp.id                                    E3I 
_chem_comp.name                                  "3-chloro-5-{7-[2-({5-chloro-2-[(2S)-2-methyl-4-(oxetan-3-yl)piperazin-1-yl]pyridin-4-yl}amino)-2-oxoethyl]-3-methyl-4-oxo-2-(trifluoromethyl)-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl}-2-hydroxybenzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H29 Cl2 F3 N8 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-12-01 
_chem_comp.pdbx_modified_date                    2022-11-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        709.503 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     E3I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7T0U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
E3I C02  C1  C  0 1 N N N -13.221 0.141  16.210 -2.259 4.165  -2.220 C02  E3I 1  
E3I C03  C2  C  0 1 N N N -15.243 0.256  14.787 -2.921 2.038  -1.225 C03  E3I 2  
E3I C05  C3  C  0 1 Y N N -16.424 1.035  14.421 -2.717 0.648  -1.078 C05  E3I 3  
E3I C06  C4  C  0 1 Y N N -17.507 0.822  13.480 -3.380 -0.417 -0.318 C06  E3I 4  
E3I C07  C5  C  0 1 Y N N -17.794 -0.177 12.492 -4.554 -0.272 0.576  C07  E3I 5  
E3I C08  C6  C  0 1 Y N N -19.132 -0.360 12.102 -4.562 0.717  1.562  C08  E3I 6  
E3I C09  C7  C  0 1 Y N N -19.500 -1.244 11.116 -5.652 0.858  2.396  C09  E3I 7  
E3I C11  C8  C  0 1 Y N N -18.577 -2.049 10.461 -6.747 0.015  2.262  C11  E3I 8  
E3I C13  C9  C  0 1 Y N N -17.219 -1.919 10.843 -6.748 -0.981 1.276  C13  E3I 9  
E3I C14  C10 C  0 1 N N N -16.137 -2.698 10.238 -7.910 -1.878 1.131  C14  E3I 10 
E3I C17  C11 C  0 1 Y N N -16.882 -0.978 11.815 -5.647 -1.117 0.430  C17  E3I 11 
E3I C18  C12 C  0 1 Y N N -18.326 1.944  13.719 -2.706 -1.562 -0.596 C18  E3I 12 
E3I C20  C13 C  0 1 N N N -18.397 3.871  15.137 -0.744 -2.284 -1.986 C20  E3I 13 
E3I C21  C14 C  0 1 N N N -19.524 3.696  16.110 0.501  -2.293 -1.136 C21  E3I 14 
E3I C23  C15 C  0 1 Y N N -21.599 4.675  16.994 2.710  -3.063 -0.718 C23  E3I 15 
E3I C24  C16 C  0 1 Y N N -21.541 4.177  18.277 3.095  -1.884 -0.089 C24  E3I 16 
E3I C25  C17 C  0 1 Y N N -22.537 4.409  19.201 4.292  -1.855 0.615  C25  E3I 17 
E3I C27  C18 C  0 1 N N S -21.400 2.957  20.969 5.977  -0.866 1.934  C27  E3I 18 
E3I C28  C19 C  0 1 N N N -20.164 3.824  21.321 7.063  -1.179 0.902  C28  E3I 19 
E3I C29  C20 C  0 1 N N N -21.879 2.043  22.115 6.340  0.418  2.683  C29  E3I 20 
E3I C31  C21 C  0 1 N N N -23.071 1.838  24.079 6.826  2.774  2.402  C31  E3I 21 
E3I C32  C22 C  0 1 N N N -22.065 1.069  24.892 8.263  2.724  2.956  C32  E3I 22 
E3I C34  C23 C  0 1 N N N -23.561 2.423  25.452 7.356  3.853  1.439  C34  E3I 23 
E3I C35  C24 C  0 1 N N N -23.638 3.519  22.611 5.119  1.718  1.048  C35  E3I 24 
E3I C36  C25 C  0 1 N N N -23.267 4.509  21.599 4.756  0.434  0.298  C36  E3I 25 
E3I C38  C26 C  0 1 Y N N -23.671 5.654  17.656 4.722  -4.068 0.103  C38  E3I 26 
E3I C39  C27 C  0 1 Y N N -22.705 5.440  16.694 3.549  -4.174 -0.614 C39  E3I 27 
E3I C42  C28 C  0 1 Y N N -16.652 2.181  15.163 -1.666 0.038  -1.773 C42  E3I 28 
E3I C44  C29 C  0 1 N N N -14.815 2.013  16.445 -1.081 2.075  -2.686 C44  E3I 29 
E3I C45  C30 C  0 1 N N N -13.956 2.541  17.503 -0.167 2.868  -3.585 C45  E3I 30 
E3I F46  F1  F  0 1 N N N -14.421 3.692  18.075 0.787  2.014  -4.149 F46  E3I 31 
E3I F47  F2  F  0 1 N N N -12.755 2.799  17.247 -0.917 3.466  -4.602 F47  E3I 32 
E3I F48  F3  F  0 1 N N N -13.946 1.703  18.609 0.478  3.859  -2.836 F48  E3I 33 
E3I N01  N1  N  0 1 N N N -14.468 0.838  15.843 -2.083 2.722  -2.038 N01  E3I 34 
E3I N16  N2  N  0 1 N N N -16.496 -3.664 9.351  -7.908 -2.835 0.182  N16  E3I 35 
E3I N19  N3  N  0 1 Y N N -17.802 2.717  14.693 -1.684 -1.290 -1.464 N19  E3I 36 
E3I N22  N4  N  0 1 N N N -20.561 4.538  16.081 1.512  -3.135 -1.431 N22  E3I 37 
E3I N26  N5  N  0 1 N N N -22.489 3.890  20.497 4.689  -0.683 1.250  N26  E3I 38 
E3I N30  N6  N  0 1 N N N -22.513 2.857  23.137 6.406  1.536  1.732  N30  E3I 39 
E3I N37  N7  N  0 1 Y N N -23.590 5.169  18.859 5.058  -2.934 0.689  N37  E3I 40 
E3I N43  N8  N  0 1 N N N -15.902 2.696  16.166 -0.881 0.794  -2.560 N43  E3I 41 
E3I O04  O1  O  0 1 N N N -14.820 -0.727 14.206 -3.828 2.604  -0.641 O04  E3I 42 
E3I O12  O2  O  0 1 N N N -18.933 -2.899 9.515  -7.815 0.153  3.089  O12  E3I 43 
E3I O15  O3  O  0 1 N N N -14.943 -2.516 10.541 -8.870 -1.754 1.867  O15  E3I 44 
E3I O33  O4  O  0 1 N N N -22.708 1.566  26.152 8.396  4.055  2.417  O33  E3I 45 
E3I O41  O5  O  0 1 N N N -19.403 2.782  16.953 0.593  -1.543 -0.188 O41  E3I 46 
E3I CL10 CL1 CL 0 0 N N N -21.186 -1.326 10.751 -5.652 2.091  3.618  CL10 E3I 47 
E3I CL40 CL2 CL 0 0 N N N -22.920 6.201  15.160 3.119  -5.673 -1.378 CL40 E3I 48 
E3I H022 H1  H  0 0 N N N -12.723 0.684  17.027 -3.107 4.505  -1.626 H022 E3I 49 
E3I H021 H2  H  0 0 N N N -13.456 -0.882 16.540 -1.357 4.684  -1.896 H021 E3I 50 
E3I H023 H3  H  0 0 N N N -12.553 0.100  15.337 -2.443 4.378  -3.273 H023 E3I 51 
E3I H081 H4  H  0 0 N N N -19.900 0.216  12.596 -3.713 1.375  1.671  H081 E3I 52 
E3I H171 H5  H  0 0 N N N -15.836 -0.863 12.060 -5.642 -1.883 -0.332 H171 E3I 53 
E3I H181 H6  H  0 0 N N N -19.246 2.156  13.195 -2.940 -2.537 -0.194 H181 E3I 54 
E3I H202 H7  H  0 0 N N N -17.623 4.483  15.624 -0.481 -2.031 -3.013 H202 E3I 55 
E3I H201 H8  H  0 0 N N N -18.789 4.406  14.260 -1.207 -3.270 -1.962 H201 E3I 56 
E3I H241 H9  H  0 0 N N N -20.686 3.585  18.569 2.473  -1.003 -0.147 H241 E3I 57 
E3I H271 H10 H  0 0 N N N -21.119 2.310  20.125 5.900  -1.691 2.642  H271 E3I 58 
E3I H283 H11 H  0 0 N N N -19.347 3.175  21.670 8.019  -1.312 1.410  H283 E3I 59 
E3I H282 H12 H  0 0 N N N -19.837 4.376  20.427 6.805  -2.093 0.369  H282 E3I 60 
E3I H281 H13 H  0 0 N N N -20.431 4.537  22.115 7.140  -0.354 0.194  H281 E3I 61 
E3I H292 H14 H  0 0 N N N -22.602 1.311  21.725 5.580  0.627  3.437  H292 E3I 62 
E3I H291 H15 H  0 0 N N N -21.018 1.513  22.548 7.309  0.295  3.168  H291 E3I 63 
E3I H311 H16 H  0 0 N N N -23.830 1.192  23.614 6.091  3.144  3.116  H311 E3I 64 
E3I H321 H17 H  0 0 N N N -22.119 -0.022 24.760 8.314  2.682  4.044  H321 E3I 65 
E3I H322 H18 H  0 0 N N N -21.026 1.404  24.755 8.898  1.985  2.469  H322 E3I 66 
E3I H341 H19 H  0 0 N N N -23.330 3.490  25.589 7.714  3.459  0.488  H341 E3I 67 
E3I H342 H20 H  0 0 N N N -24.628 2.250  25.654 6.688  4.707  1.324  H342 E3I 68 
E3I H352 H21 H  0 0 N N N -24.165 4.029  23.430 5.197  2.543  0.339  H352 E3I 69 
E3I H351 H22 H  0 0 N N N -24.306 2.775  22.152 4.345  1.942  1.782  H351 E3I 70 
E3I H361 H23 H  0 0 N N N -22.657 5.293  22.072 3.787  0.557  -0.187 H361 E3I 71 
E3I H362 H24 H  0 0 N N N -24.182 4.957  21.184 5.515  0.226  -0.456 H362 E3I 72 
E3I H381 H25 H  0 0 N N N -24.533 6.251  17.398 5.374  -4.925 0.187  H381 E3I 73 
E3I H162 H26 H  0 0 N N N -15.796 -4.242 8.931  -8.672 -3.425 0.086  H162 E3I 74 
E3I H161 H27 H  0 0 N N N -17.460 -3.797 9.119  -7.142 -2.934 -0.405 H161 E3I 75 
E3I H221 H28 H  0 0 N N N -20.595 5.154  15.294 1.407  -3.790 -2.138 H221 E3I 76 
E3I H121 H30 H  0 0 N N N -19.874 -2.856 9.388  -7.756 -0.371 3.899  H121 E3I 77 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
E3I N16  C14  SING N N 1  
E3I O12  C11  SING N N 2  
E3I C14  O15  DOUB N N 3  
E3I C14  C13  SING N N 4  
E3I C11  C13  DOUB Y N 5  
E3I C11  C09  SING Y N 6  
E3I CL10 C09  SING N N 7  
E3I C13  C17  SING Y N 8  
E3I C09  C08  DOUB Y N 9  
E3I C17  C07  DOUB Y N 10 
E3I C08  C07  SING Y N 11 
E3I C07  C06  SING N N 12 
E3I C06  C18  DOUB Y N 13 
E3I C06  C05  SING Y N 14 
E3I C18  N19  SING Y N 15 
E3I O04  C03  DOUB N N 16 
E3I C05  C03  SING N N 17 
E3I C05  C42  DOUB Y N 18 
E3I N19  C20  SING N N 19 
E3I N19  C42  SING Y N 20 
E3I C03  N01  SING N N 21 
E3I C20  C21  SING N N 22 
E3I CL40 C39  SING N N 23 
E3I C42  N43  SING N N 24 
E3I N01  C02  SING N N 25 
E3I N01  C44  SING N N 26 
E3I N22  C21  SING N N 27 
E3I N22  C23  SING N N 28 
E3I C21  O41  DOUB N N 29 
E3I N43  C44  DOUB N N 30 
E3I C44  C45  SING N N 31 
E3I C39  C23  DOUB Y N 32 
E3I C39  C38  SING Y N 33 
E3I C23  C24  SING Y N 34 
E3I F47  C45  SING N N 35 
E3I C45  F46  SING N N 36 
E3I C45  F48  SING N N 37 
E3I C38  N37  DOUB Y N 38 
E3I C24  C25  DOUB Y N 39 
E3I N37  C25  SING Y N 40 
E3I C25  N26  SING N N 41 
E3I N26  C27  SING N N 42 
E3I N26  C36  SING N N 43 
E3I C27  C28  SING N N 44 
E3I C27  C29  SING N N 45 
E3I C36  C35  SING N N 46 
E3I C29  N30  SING N N 47 
E3I C35  N30  SING N N 48 
E3I N30  C31  SING N N 49 
E3I C31  C32  SING N N 50 
E3I C31  C34  SING N N 51 
E3I C32  O33  SING N N 52 
E3I C34  O33  SING N N 53 
E3I C02  H022 SING N N 54 
E3I C02  H021 SING N N 55 
E3I C02  H023 SING N N 56 
E3I C08  H081 SING N N 57 
E3I C17  H171 SING N N 58 
E3I C18  H181 SING N N 59 
E3I C20  H202 SING N N 60 
E3I C20  H201 SING N N 61 
E3I C24  H241 SING N N 62 
E3I C27  H271 SING N N 63 
E3I C28  H283 SING N N 64 
E3I C28  H282 SING N N 65 
E3I C28  H281 SING N N 66 
E3I C29  H292 SING N N 67 
E3I C29  H291 SING N N 68 
E3I C31  H311 SING N N 69 
E3I C32  H321 SING N N 70 
E3I C32  H322 SING N N 71 
E3I C34  H341 SING N N 72 
E3I C34  H342 SING N N 73 
E3I C35  H352 SING N N 74 
E3I C35  H351 SING N N 75 
E3I C36  H361 SING N N 76 
E3I C36  H362 SING N N 77 
E3I C38  H381 SING N N 78 
E3I N16  H162 SING N N 79 
E3I N16  H161 SING N N 80 
E3I N22  H221 SING N N 81 
E3I O12  H121 SING N N 82 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
E3I SMILES           ACDLabs              12.01 "NC(=O)c1cc(cc(Cl)c1O)c1cn(CC(=O)Nc2cc(ncc2Cl)N2CCN(CC2C)C2COC2)c2N=C(N(C)C(=O)c12)C(F)(F)F"                                                                                                                                                                 
E3I InChI            InChI                1.03  "InChI=1S/C30H29Cl2F3N8O5/c1-14-9-41(16-12-48-13-16)3-4-43(14)22-7-21(20(32)8-37-22)38-23(44)11-42-10-18(15-5-17(26(36)46)25(45)19(31)6-15)24-27(42)39-29(30(33,34)35)40(2)28(24)47/h5-8,10,14,16,45H,3-4,9,11-13H2,1-2H3,(H2,36,46)(H,37,38,44)/t14-/m0/s1" 
E3I InChIKey         InChI                1.03  KEVLSWXLPHCNJR-AWEZNQCLSA-N                                                                                                                                                                                                                                  
E3I SMILES_CANONICAL CACTVS               3.385 "C[C@H]1CN(CCN1c2cc(NC(=O)Cn3cc(c4cc(Cl)c(O)c(c4)C(N)=O)c5C(=O)N(C)C(=Nc35)C(F)(F)F)c(Cl)cn2)C6COC6"                                                                                                                                                         
E3I SMILES           CACTVS               3.385 "C[CH]1CN(CCN1c2cc(NC(=O)Cn3cc(c4cc(Cl)c(O)c(c4)C(N)=O)c5C(=O)N(C)C(=Nc35)C(F)(F)F)c(Cl)cn2)C6COC6"                                                                                                                                                          
E3I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CN(CCN1c2cc(c(cn2)Cl)NC(=O)Cn3cc(c4c3N=C(N(C4=O)C)C(F)(F)F)c5cc(c(c(c5)Cl)O)C(=O)N)C6COC6"                                                                                                                                                           
E3I SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CN(CCN1c2cc(c(cn2)Cl)NC(=O)Cn3cc(c4c3N=C(N(C4=O)C)C(F)(F)F)c5cc(c(c(c5)Cl)O)C(=O)N)C6COC6"                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
E3I "SYSTEMATIC NAME" ACDLabs              12.01 "3-chloro-5-{7-[2-({5-chloro-2-[(2S)-2-methyl-4-(oxetan-3-yl)piperazin-1-yl]pyridin-4-yl}amino)-2-oxoethyl]-3-methyl-4-oxo-2-(trifluoromethyl)-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl}-2-hydroxybenzamide"                 
E3I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-chloranyl-5-[7-[2-[[5-chloranyl-2-[(2~{S})-2-methyl-4-(oxetan-3-yl)piperazin-1-yl]pyridin-4-yl]amino]-2-oxidanylidene-ethyl]-3-methyl-4-oxidanylidene-2-(trifluoromethyl)pyrrolo[2,3-d]pyrimidin-5-yl]-2-oxidanyl-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
E3I "Create component" 2021-12-01 RCSB 
E3I "Initial release"  2022-11-09 RCSB 
# 
