data_D7I
#

_chem_comp.id                                   D7I
_chem_comp.name                                 "5,5'-(ethane-1,2-diylbis(oxy))bis(benzene-5,4,2,1,-tetrayl)hexakisphosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H20 O26 P6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-09-04
_chem_comp.pdbx_modified_date                   2021-01-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       790.136
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D7I
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6SQU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D7I  C1      C1   C  0  1  Y  N  N   -9.167  28.484  -20.201  -2.718   0.037   0.354  C1      D7I   1  
D7I  "C1'"   C2   C  0  1  Y  N  N   -8.594  24.888  -16.892   2.719  -0.022  -0.358  "C1'"   D7I   2  
D7I  C2      C3   C  0  1  Y  N  N   -8.817  28.644  -21.539  -3.394   1.117   0.909  C2      D7I   3  
D7I  "C2'"   C4   C  0  1  Y  N  N   -7.888  23.794  -17.416   3.370   1.051  -0.956  "C2'"   D7I   4  
D7I  C3      C5   C  0  1  Y  N  N   -9.727  29.234  -22.424  -4.772   1.205   0.796  C3      D7I   5  
D7I  "C3'"   C6   C  0  1  Y  N  N   -6.821  23.239  -16.687   4.746   1.174  -0.850  "C3'"   D7I   6  
D7I  C4      C7   C  0  1  Y  N  N  -10.977  29.649  -21.969  -5.477   0.215   0.130  C4      D7I   7  
D7I  "C4'"   C8   C  0  1  Y  N  N   -6.466  23.765  -15.435   5.474   0.227  -0.147  "C4'"   D7I   8  
D7I  C5      C9   C  0  1  Y  N  N  -11.323  29.472  -20.633  -4.800  -0.867  -0.425  C5      D7I   9  
D7I  "C5'"   C10  C  0  1  Y  N  N   -7.172  24.856  -14.909   4.823  -0.847   0.451  "C5'"   D7I  10  
D7I  C6      C11  C  0  1  Y  N  N  -10.421  28.894  -19.754  -3.422  -0.954  -0.312  C6      D7I  11  
D7I  "C6'"   C12  C  0  1  Y  N  N   -8.239  25.414  -15.637   3.447  -0.970   0.345  "C6'"   D7I  12  
D7I  C7      C13  C  0  1  N  N  N   -8.190  26.445  -19.409  -0.745  -1.235  -0.036  C7      D7I  13  
D7I  "C7'"   C14  C  0  1  N  N  N   -9.538  25.749  -19.031   0.752  -1.200   0.277  "C7'"   D7I  14  
D7I  O1      O1   O  0  1  N  N  N   -8.285  27.879  -19.241  -1.364  -0.046   0.461  O1      D7I  15  
D7I  "O1'"   O2   O  0  1  N  N  N   -9.703  25.493  -17.616   1.367  -0.139  -0.458  "O1'"   D7I  16  
D7I  O2      O3   O  0  1  N  N  N   -7.546  28.239  -22.014  -2.702   2.089   1.564  O2      D7I  17  
D7I  "O2'"   O4   O  0  1  N  N  N   -8.214  23.237  -18.679   2.655   1.981  -1.646  "O2'"   D7I  18  
D7I  O21     O5   O  0  1  N  N  N   -6.067  26.346  -22.710  -2.163   0.641   3.691  O21     D7I  19  
D7I  O22     O6   O  0  1  N  N  N   -8.489  25.994  -22.705  -2.054   3.265   3.824  O22     D7I  20  
D7I  O23     O7   O  0  1  N  N  N   -7.452  27.429  -24.420  -4.252   2.053   3.556  O23     D7I  21  
D7I  O4      O8   O  0  1  N  N  N  -11.897  30.229  -22.857  -6.830   0.300   0.019  O4      D7I  22  
D7I  "O4'"   O9   O  0  1  N  N  N   -5.374  23.183  -14.707   6.825   0.347  -0.043  "O4'"   D7I  23  
D7I  O41     O10  O  0  1  N  N  N  -14.178  30.171  -23.969  -6.870   0.931  -2.533  O41     D7I  24  
D7I  O42     O11  O  0  1  N  N  N  -13.709  28.564  -22.151  -8.938   1.490  -1.008  O42     D7I  25  
D7I  O43     O12  O  0  1  N  N  N  -12.623  28.288  -24.358  -6.741   2.705  -0.742  O43     D7I  26  
D7I  O5      O13  O  0  1  N  N  N  -12.570  29.881  -20.150  -5.492  -1.838  -1.080  O5      D7I  27  
D7I  "O5'"   O14  O  0  1  N  N  N   -6.832  25.389  -13.665   5.537  -1.777   1.141  "O5'"   D7I  28  
D7I  O51     O15  O  0  1  N  N  N  -13.680  32.099  -19.587  -6.255  -2.918   1.071  O51     D7I  29  
D7I  O52     O16  O  0  1  N  N  N  -12.838  30.664  -17.743  -6.586  -4.229  -1.060  O52     D7I  30  
D7I  O53     O17  O  0  1  N  N  N  -11.243  31.848  -19.234  -4.194  -3.870  -0.031  O53     D7I  31  
D7I  P2      P1   P  0  1  N  N  N   -7.396  26.988  -22.972  -2.824   2.013   3.167  P2      D7I  32  
D7I  "P2'"   P2   P  0  1  N  N  N   -9.537  22.355  -18.843   2.775   1.844  -3.246  "P2'"   D7I  33  
D7I  P4      P3   P  0  1  N  N  N  -13.118  29.312  -23.343  -7.332   1.385  -1.059  P4      D7I  34  
D7I  "P4'"   P4   P  0  1  N  N  N   -3.924  23.176  -15.422   7.304   1.484   0.991  "P4'"   D7I  35  
D7I  P5      P5   P  0  1  N  N  N  -12.585  31.140  -19.170  -5.645  -3.207  -0.246  P5      D7I  36  
D7I  "P5'"   P6   P  0  1  N  N  N   -6.191  26.851  -13.600   5.720  -3.174   0.361  "P5'"   D7I  37  
D7I  "O21'"  O18  O  0  0  N  N  N   -9.176  20.877  -18.949   1.976   3.052  -3.949  "O21'"  D7I  38  
D7I  "O22'"  O19  O  0  0  N  N  N  -10.240  22.768  -20.106   4.201   1.899  -3.640  "O22'"  D7I  39  
D7I  "O23'"  O20  O  0  0  N  N  N  -10.446  22.590  -17.660   2.143   0.439  -3.713  "O23'"  D7I  40  
D7I  "O41'"  O21  O  0  0  N  N  N   -2.877  22.706  -14.441   6.855   1.077   2.482  "O41'"  D7I  41  
D7I  "O42'"  O22  O  0  0  N  N  N   -3.584  24.582  -15.889   8.907   1.623   0.932  "O42'"  D7I  42  
D7I  "O43'"  O23  O  0  0  N  N  N   -3.958  22.256  -16.610   6.683   2.777   0.624  "O43'"  D7I  43  
D7I  "O51'"  O24  O  0  0  N  N  N   -5.151  26.899  -12.517   4.283  -3.877   0.176  "O51'"  D7I  44  
D7I  "O52'"  O25  O  0  0  N  N  N   -5.558  27.187  -14.933   6.320  -2.922  -0.968  "O52'"  D7I  45  
D7I  "O53'"  O26  O  0  0  N  N  N   -7.283  27.853  -13.293   6.685  -4.142   1.211  "O53'"  D7I  46  
D7I  H3      H1   H  0  1  N  N  N   -9.460  29.368  -23.462  -5.298   2.044   1.227  H3      D7I  47  
D7I  "H3'"   H2   H  0  1  N  N  N   -6.271  22.403  -17.093   5.252   2.007  -1.314  "H3'"   D7I  48  
D7I  H6      H3   H  0  1  N  N  N  -10.692  28.761  -18.717  -2.897  -1.791  -0.747  H6      D7I  49  
D7I  "H6'"   H4   H  0  1  N  N  N   -8.788  26.250  -15.230   2.941  -1.803   0.809  "H6'"   D7I  50  
D7I  H71     H5   H  0  1  N  N  N   -7.951  26.220  -20.459  -0.890  -1.296  -1.114  H71     D7I  51  
D7I  H72     H6   H  0  1  N  N  N   -7.391  26.058  -18.760  -1.196  -2.105   0.442  H72     D7I  52  
D7I  "H7'2"  H7   H  0  0  N  N  N  -10.364  26.396  -19.362   0.896  -1.034   1.344  "H7'2"  D7I  53  
D7I  "H7'1"  H8   H  0  0  N  N  N   -9.590  24.787  -19.563   1.205  -2.149  -0.008  "H7'1"  D7I  54  
D7I  H1      H9   H  0  1  N  N  N   -5.548  26.354  -23.506  -1.210   0.581   3.539  H1      D7I  55  
D7I  H2      H10  H  0  1  N  N  N   -8.987  25.849  -23.501  -2.086   3.283   4.791  H2      D7I  56  
D7I  H4      H11  H  0  1  N  N  N  -14.319  29.897  -24.868  -7.221   0.073  -2.807  H4      D7I  57  
D7I  H5      H12  H  0  1  N  N  N  -13.641  27.628  -22.299  -9.311   2.127  -1.633  H5      D7I  58  
D7I  H7      H13  H  0  1  N  N  N  -13.631  31.068  -17.410  -6.723  -5.077  -0.616  H7      D7I  59  
D7I  H8      H14  H  0  1  N  N  N  -11.371  32.744  -19.522  -3.735  -4.087  -0.854  H8      D7I  60  
D7I  H9      H15  H  0  1  N  N  N   -9.471  20.538  -19.786   2.006   3.033  -4.916  H9      D7I  61  
D7I  H10     H16  H  0  1  N  N  N  -11.272  22.950  -17.961   1.192   0.364  -3.556  H10     D7I  62  
D7I  H11     H17  H  0  1  N  N  N   -2.455  21.924  -14.778   7.225   0.239   2.789  H11     D7I  63  
D7I  H12     H18  H  0  1  N  N  N   -3.465  24.583  -16.832   9.266   2.292   1.530  H12     D7I  64  
D7I  H13     H19  H  0  1  N  N  N   -4.311  27.131  -12.894   3.830  -4.071   1.008  H13     D7I  65  
D7I  H14     H20  H  0  1  N  N  N   -7.343  28.484  -14.001   6.840  -5.003   0.800  H14     D7I  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D7I  O23     P2      DOUB  N  N   1  
D7I  O43     P4      DOUB  N  N   2  
D7I  O41     P4      SING  N  N   3  
D7I  P4      O4      SING  N  N   4  
D7I  P4      O42     SING  N  N   5  
D7I  P2      O21     SING  N  N   6  
D7I  P2      O22     SING  N  N   7  
D7I  P2      O2      SING  N  N   8  
D7I  O4      C4      SING  N  N   9  
D7I  C3      C4      DOUB  Y  N  10  
D7I  C3      C2      SING  Y  N  11  
D7I  O2      C2      SING  N  N  12  
D7I  C4      C5      SING  Y  N  13  
D7I  C2      C1      DOUB  Y  N  14  
D7I  C5      O5      SING  N  N  15  
D7I  C5      C6      DOUB  Y  N  16  
D7I  C1      C6      SING  Y  N  17  
D7I  C1      O1      SING  N  N  18  
D7I  O5      P5      SING  N  N  19  
D7I  "O22'"  "P2'"   DOUB  N  N  20  
D7I  O51     P5      DOUB  N  N  21  
D7I  C7      O1      SING  N  N  22  
D7I  C7      "C7'"   SING  N  N  23  
D7I  O53     P5      SING  N  N  24  
D7I  P5      O52     SING  N  N  25  
D7I  "C7'"   "O1'"   SING  N  N  26  
D7I  "O21'"  "P2'"   SING  N  N  27  
D7I  "P2'"   "O2'"   SING  N  N  28  
D7I  "P2'"   "O23'"  SING  N  N  29  
D7I  "O2'"   "C2'"   SING  N  N  30  
D7I  "O1'"   "C1'"   SING  N  N  31  
D7I  "C2'"   "C1'"   DOUB  Y  N  32  
D7I  "C2'"   "C3'"   SING  Y  N  33  
D7I  "C1'"   "C6'"   SING  Y  N  34  
D7I  "C3'"   "C4'"   DOUB  Y  N  35  
D7I  "O43'"  "P4'"   DOUB  N  N  36  
D7I  "O42'"  "P4'"   SING  N  N  37  
D7I  "C6'"   "C5'"   DOUB  Y  N  38  
D7I  "C4'"   "C5'"   SING  Y  N  39  
D7I  "C4'"   "O4'"   SING  N  N  40  
D7I  "P4'"   "O4'"   SING  N  N  41  
D7I  "P4'"   "O41'"  SING  N  N  42  
D7I  "O52'"  "P5'"   DOUB  N  N  43  
D7I  "C5'"   "O5'"   SING  N  N  44  
D7I  "O5'"   "P5'"   SING  N  N  45  
D7I  "P5'"   "O53'"  SING  N  N  46  
D7I  "P5'"   "O51'"  SING  N  N  47  
D7I  C3      H3      SING  N  N  48  
D7I  "C3'"   "H3'"   SING  N  N  49  
D7I  C6      H6      SING  N  N  50  
D7I  "C6'"   "H6'"   SING  N  N  51  
D7I  C7      H71     SING  N  N  52  
D7I  C7      H72     SING  N  N  53  
D7I  "C7'"   "H7'2"  SING  N  N  54  
D7I  "C7'"   "H7'1"  SING  N  N  55  
D7I  O21     H1      SING  N  N  56  
D7I  O22     H2      SING  N  N  57  
D7I  O41     H4      SING  N  N  58  
D7I  O42     H5      SING  N  N  59  
D7I  O52     H7      SING  N  N  60  
D7I  O53     H8      SING  N  N  61  
D7I  "O21'"  H9      SING  N  N  62  
D7I  "O23'"  H10     SING  N  N  63  
D7I  "O41'"  H11     SING  N  N  64  
D7I  "O42'"  H12     SING  N  N  65  
D7I  "O51'"  H13     SING  N  N  66  
D7I  "O53'"  H14     SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D7I  InChI             InChI                 1.03   "InChI=1S/C14H20O26P6/c15-41(16,17)35-9-5-13(39-45(27,28)29)11(37-43(21,22)23)3-7(9)33-1-2-34-8-4-12(38-44(24,25)26)14(40-46(30,31)32)6-10(8)36-42(18,19)20/h3-6H,1-2H2,(H2,15,16,17)(H2,18,19,20)(H2,21,22,23)(H2,24,25,26)(H2,27,28,29)(H2,30,31,32)"  
D7I  InChIKey          InChI                 1.03   SPZGMBGXCYAMCB-UHFFFAOYSA-N  
D7I  SMILES_CANONICAL  CACTVS                3.385  "O[P](O)(=O)Oc1cc(O[P](O)(O)=O)c(O[P](O)(O)=O)cc1OCCOc2cc(O[P](O)(O)=O)c(O[P](O)(O)=O)cc2O[P](O)(O)=O"  
D7I  SMILES            CACTVS                3.385  "O[P](O)(=O)Oc1cc(O[P](O)(O)=O)c(O[P](O)(O)=O)cc1OCCOc2cc(O[P](O)(O)=O)c(O[P](O)(O)=O)cc2O[P](O)(O)=O"  
D7I  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1c(c(cc(c1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OCCOc2cc(c(cc2OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O"  
D7I  SMILES            "OpenEye OEToolkits"  2.0.7  "c1c(c(cc(c1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OCCOc2cc(c(cc2OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O"  
#
_pdbx_chem_comp_identifier.comp_id          D7I
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[2,4-diphosphonooxy-5-[2-(2,4,5-triphosphonooxyphenoxy)ethoxy]phenyl] dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D7I  "Create component"  2019-09-04  EBI   
D7I  "Initial release"   2021-01-13  RCSB  
##
