data_D6I
# 
_chem_comp.id                                    D6I 
_chem_comp.name                                  "6-(benzimidazol-1-yl)-N-[5-[3-(dimethylamino)propoxy]pyridin-2-yl]pyrimidin-4-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H23 N7 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-07-25 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        389.454 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D6I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4BZD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D6I C28  C28  C 0 1 Y N N 15.056 -5.482  9.989  -8.087 2.282  0.036  C28  D6I 1  
D6I C27  C27  C 0 1 Y N N 13.855 -6.155  10.016 -6.840 2.889  -0.008 C27  D6I 2  
D6I C29  C29  C 0 1 Y N N 15.995 -5.656  10.993 -8.198 0.920  0.064  C29  D6I 3  
D6I C26  C26  C 0 1 Y N N 13.554 -7.037  11.043 -5.691 2.125  -0.027 C26  D6I 4  
D6I C9   C9   C 0 1 Y N N 8.447  -11.316 9.811  3.175  -2.867 0.143  C9   D6I 5  
D6I C10  C10  C 0 1 Y N N 8.955  -11.482 11.081 1.809  -3.076 0.077  C10  D6I 6  
D6I C16  C16  C 0 1 Y N N 12.556 -9.435  12.798 -2.656 -1.276 -0.051 C16  D6I 7  
D6I C13  C13  C 0 1 Y N N 10.119 -9.671  9.422  2.744  -0.515 -0.005 C13  D6I 8  
D6I C19  C19  C 0 1 Y N N 12.613 -9.980  15.404 -1.604 1.191  -0.125 C19  D6I 9  
D6I C22  C22  C 0 1 Y N N 15.736 -7.755  13.806 -5.559 -1.459 0.034  C22  D6I 10 
D6I C24  C24  C 0 1 Y N N 15.716 -6.540  12.034 -7.048 0.127  0.047  C24  D6I 11 
D6I C25  C25  C 0 1 Y N N 14.497 -7.211  12.047 -5.786 0.741  0.001  C25  D6I 12 
D6I C8   C8   C 0 1 Y N N 9.047  -10.412 8.962  3.649  -1.558 0.101  C8   D6I 13 
D6I C17  C17  C 0 1 Y N N 13.490 -8.866  13.665 -3.474 -0.153 -0.048 C17  D6I 14 
D6I C11  C11  C 0 1 Y N N 10.056 -10.720 11.465 0.961  -1.979 -0.029 C11  D6I 15 
D6I C15  C15  C 0 1 Y N N 11.609 -10.263 13.406 -1.276 -1.089 -0.093 C15  D6I 16 
D6I C1   C1   C 0 1 N N N 8.278  -11.754 2.840  9.440  1.097  -0.966 C1   D6I 17 
D6I C3   C3   C 0 1 N N N 9.560  -13.181 4.247  9.258  3.077  0.414  C3   D6I 18 
D6I C5   C5   C 0 1 N N N 8.790  -9.762  5.377  6.916  0.144  0.197  C5   D6I 19 
D6I C4   C4   C 0 1 N N N 8.500  -11.236 5.171  7.351  1.610  0.145  C4   D6I 20 
D6I C6   C6   C 0 1 N N N 9.269  -9.431  6.764  5.390  0.062  0.115  C6   D6I 21 
D6I N12  N12  N 0 1 Y N N 10.628 -9.823  10.653 1.447  -0.749 -0.067 N12  D6I 22 
D6I N18  N18  N 0 1 Y N N 13.563 -9.152  14.966 -2.914 1.054  -0.086 N18  D6I 23 
D6I N20  N20  N 0 1 Y N N 11.631 -10.553 14.711 -0.795 0.152  -0.129 N20  D6I 24 
D6I N23  N23  N 0 1 Y N N 16.473 -6.895  13.144 -6.836 -1.215 0.064  N23  D6I 25 
D6I N21  N21  N 0 1 Y N N 14.533 -8.021  13.186 -4.861 -0.288 -0.007 N21  D6I 26 
D6I N14  N14  N 0 1 N N N 10.588 -10.903 12.727 -0.417 -2.178 -0.097 N14  D6I 27 
D6I N2   N2   N 0 1 N N N 9.156  -11.806 3.998  8.816  1.690  0.224  N2   D6I 28 
D6I O7   O7   O 0 1 N N N 8.548  -10.248 7.693  4.984  -1.308 0.164  O7   D6I 29 
D6I H28  H28  H 0 1 N N N 15.269 -4.808  9.173  -8.978 2.891  0.054  H28  D6I 30 
D6I H27  H27  H 0 1 N N N 13.137 -5.994  9.226  -6.768 3.966  -0.030 H27  D6I 31 
D6I H29  H29  H 0 1 N N N 16.929 -5.115  10.969 -9.174 0.458  0.099  H29  D6I 32 
D6I H26  H26  H 0 1 N N N 12.616 -7.572  11.061 -4.723 2.602  -0.062 H26  D6I 33 
D6I H9   H9   H 0 1 N N N 7.590  -11.887 9.485  3.858  -3.699 0.231  H9   D6I 34 
D6I H10  H10  H 0 1 N N N 8.509  -12.189 11.765 1.407  -4.078 0.107  H10  D6I 35 
D6I H16  H16  H 0 1 N N N 12.565 -9.249  11.734 -3.079 -2.270 -0.017 H16  D6I 36 
D6I H13  H13  H 0 1 N N N 10.565 -8.940  8.763  3.105  0.503  -0.038 H13  D6I 37 
D6I H19  H19  H 0 1 N N N 12.645 -10.216 16.457 -1.182 2.185  -0.155 H19  D6I 38 
D6I H22  H22  H 0 1 N N N 16.039 -8.207  14.739 -5.117 -2.444 0.038  H22  D6I 39 
D6I H14  H14  H 0 1 N N N 10.152 -11.637 13.248 -0.776 -3.078 -0.148 H14  D6I 40 
D6I H11C H11C H 0 0 N N N 7.975  -10.713 2.655  10.524 1.105  -0.850 H11C D6I 41 
D6I H12C H12C H 0 0 N N N 8.810  -12.143 1.959  9.095  0.069  -1.084 H12C D6I 42 
D6I H13C H13C H 0 0 N N N 7.385  -12.368 3.029  9.165  1.675  -1.848 H13C D6I 43 
D6I H31C H31C H 0 0 N N N 10.224 -13.216 5.123  8.920  3.685  -0.425 H31C D6I 44 
D6I H32C H32C H 0 0 N N N 8.668  -13.796 4.438  8.836  3.469  1.340  H32C D6I 45 
D6I H33C H33C H 0 0 N N N 10.093 -13.571 3.368  10.346 3.107  0.470  H33C D6I 46 
D6I H51C H51C H 0 0 N N N 9.565  -9.456  4.659  7.355  -0.396 -0.642 H51C D6I 47 
D6I H52C H52C H 0 0 N N N 7.867  -9.196  5.183  7.254  -0.301 1.133  H52C D6I 48 
D6I H41C H41C H 0 0 N N N 8.842  -11.785 6.061  7.013  2.056  -0.791 H41C D6I 49 
D6I H42C H42C H 0 0 N N N 7.413  -11.363 5.057  6.912  2.150  0.983  H42C D6I 50 
D6I H61C H61C H 0 0 N N N 10.346 -9.637  6.845  4.951  0.601  0.954  H61C D6I 51 
D6I H62C H62C H 0 0 N N N 9.082  -8.369  6.979  5.053  0.507  -0.821 H62C D6I 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D6I C28 C27  SING Y N 1  
D6I C28 C29  DOUB Y N 2  
D6I C27 C26  DOUB Y N 3  
D6I C29 C24  SING Y N 4  
D6I C26 C25  SING Y N 5  
D6I C9  C10  DOUB Y N 6  
D6I C9  C8   SING Y N 7  
D6I C10 C11  SING Y N 8  
D6I C16 C17  DOUB Y N 9  
D6I C16 C15  SING Y N 10 
D6I C13 C8   DOUB Y N 11 
D6I C13 N12  SING Y N 12 
D6I C19 N18  DOUB Y N 13 
D6I C19 N20  SING Y N 14 
D6I C22 N23  DOUB Y N 15 
D6I C22 N21  SING Y N 16 
D6I C24 C25  DOUB Y N 17 
D6I C24 N23  SING Y N 18 
D6I C25 N21  SING Y N 19 
D6I C8  O7   SING N N 20 
D6I C17 N18  SING Y N 21 
D6I C17 N21  SING N N 22 
D6I C11 N12  DOUB Y N 23 
D6I C11 N14  SING N N 24 
D6I C15 N20  DOUB Y N 25 
D6I C15 N14  SING N N 26 
D6I C1  N2   SING N N 27 
D6I C3  N2   SING N N 28 
D6I C5  C4   SING N N 29 
D6I C5  C6   SING N N 30 
D6I C4  N2   SING N N 31 
D6I C6  O7   SING N N 32 
D6I C28 H28  SING N N 33 
D6I C27 H27  SING N N 34 
D6I C29 H29  SING N N 35 
D6I C26 H26  SING N N 36 
D6I C9  H9   SING N N 37 
D6I C10 H10  SING N N 38 
D6I C16 H16  SING N N 39 
D6I C13 H13  SING N N 40 
D6I C19 H19  SING N N 41 
D6I C22 H22  SING N N 42 
D6I N14 H14  SING N N 43 
D6I C1  H11C SING N N 44 
D6I C1  H12C SING N N 45 
D6I C1  H13C SING N N 46 
D6I C3  H31C SING N N 47 
D6I C3  H32C SING N N 48 
D6I C3  H33C SING N N 49 
D6I C5  H51C SING N N 50 
D6I C5  H52C SING N N 51 
D6I C4  H41C SING N N 52 
D6I C4  H42C SING N N 53 
D6I C6  H61C SING N N 54 
D6I C6  H62C SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D6I SMILES           ACDLabs              12.01 "n2c1ccccc1n(c2)c4ncnc(Nc3ncc(OCCCN(C)C)cc3)c4"                                                                                                                 
D6I InChI            InChI                1.03  "InChI=1S/C21H23N7O/c1-27(2)10-5-11-29-16-8-9-19(22-13-16)26-20-12-21(24-14-23-20)28-15-25-17-6-3-4-7-18(17)28/h3-4,6-9,12-15H,5,10-11H2,1-2H3,(H,22,23,24,26)" 
D6I InChIKey         InChI                1.03  VKUXBRRQHBTQPW-UHFFFAOYSA-N                                                                                                                                     
D6I SMILES_CANONICAL CACTVS               3.385 "CN(C)CCCOc1ccc(Nc2cc(ncn2)n3cnc4ccccc34)nc1"                                                                                                                   
D6I SMILES           CACTVS               3.385 "CN(C)CCCOc1ccc(Nc2cc(ncn2)n3cnc4ccccc34)nc1"                                                                                                                   
D6I SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN(C)CCCOc1ccc(nc1)Nc2cc(ncn2)n3cnc4c3cccc4"                                                                                                                   
D6I SMILES           "OpenEye OEToolkits" 1.9.2 "CN(C)CCCOc1ccc(nc1)Nc2cc(ncn2)n3cnc4c3cccc4"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D6I "SYSTEMATIC NAME" ACDLabs              12.01 "6-(1H-benzimidazol-1-yl)-N-{5-[3-(dimethylamino)propoxy]pyridin-2-yl}pyrimidin-4-amine" 
D6I "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "6-(benzimidazol-1-yl)-N-[5-[3-(dimethylamino)propoxy]pyridin-2-yl]pyrimidin-4-amine"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D6I "Create component"  2013-07-25 EBI  
D6I "Initial release"   2014-08-13 RCSB 
D6I "Modify descriptor" 2014-09-05 RCSB 
# 
