data_D1I
# 
_chem_comp.id                                    D1I 
_chem_comp.name                                  "3-(beta-D-glucopyranosyl)-6-pentylfuro[2,3-d]pyrimidin-2(3H)-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H24 N2 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-04-10 
_chem_comp.pdbx_modified_date                    2012-07-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        368.382 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D1I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4EKE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D1I N1     N1     N 0 1 N N N 34.020 23.670 28.735 -0.794 -0.260 -0.070 N1     D1I 1  
D1I C2     C2     C 0 1 N N N 33.291 24.198 29.745 -0.547 -0.276 1.251  C2     D1I 2  
D1I O2     O2     O 0 1 N N N 32.063 24.148 29.799 -1.478 -0.142 2.029  O2     D1I 3  
D1I N3     N3     N 0 1 N N N 33.899 24.950 30.717 0.682  -0.433 1.737  N3     D1I 4  
D1I C4     C4     C 0 1 N N N 35.331 24.825 30.792 1.717  -0.581 0.924  C4     D1I 5  
D1I C5     C5     C 0 1 N N N 36.044 24.457 29.661 1.496  -0.570 -0.479 C5     D1I 6  
D1I O5     O5     O 0 1 N N N 36.038 25.722 31.579 3.035  -0.755 1.111  O5     D1I 7  
D1I C6     C6     C 0 1 N N N 35.438 23.752 28.704 0.217  -0.406 -0.959 C6     D1I 8  
D1I C7     C7     C 0 1 N N N 37.309 24.700 30.011 2.822  -0.754 -1.084 C7     D1I 9  
D1I C8     C8     C 0 1 N N N 37.312 25.449 31.154 3.684  -0.856 -0.065 C8     D1I 10 
D1I C9     C9     C 0 1 N N N 38.627 25.982 31.818 5.170  -1.056 -0.213 C9     D1I 11 
D1I "C1'"  "C1'"  C 0 1 N N R 33.275 22.882 27.756 -2.167 -0.090 -0.552 "C1'"  D1I 12 
D1I C10    C10    C 0 1 N N N 38.529 27.506 32.240 5.875  0.301  -0.155 C10    D1I 13 
D1I C11    C11    C 0 1 N N N 38.675 27.741 33.775 7.384  0.098  -0.305 C11    D1I 14 
D1I C12    C12    C 0 1 N N N 39.698 26.796 34.458 8.089  1.455  -0.248 C12    D1I 15 
D1I C13    C13    C 0 1 N N N 40.080 27.338 35.849 9.598  1.252  -0.398 C13    D1I 16 
D1I "C2'"  "C2'"  C 0 1 N N R 33.690 23.039 26.312 -3.010 -1.295 -0.127 "C2'"  D1I 17 
D1I "O2'"  "O2'"  O 0 1 N N N 33.922 24.418 25.997 -2.487 -2.480 -0.732 "O2'"  D1I 18 
D1I "C3'"  "C3'"  C 0 1 N N S 32.559 22.420 25.465 -4.457 -1.082 -0.582 "C3'"  D1I 19 
D1I "O3'"  "O3'"  O 0 1 N N N 32.911 22.373 24.109 -5.266 -2.168 -0.126 "O3'"  D1I 20 
D1I "C4'"  "C4'"  C 0 1 N N S 32.322 20.994 25.917 -4.979 0.230  0.010  "C4'"  D1I 21 
D1I "O4'"  "O4'"  O 0 1 N N N 31.198 20.460 25.205 -6.303 0.476  -0.466 "O4'"  D1I 22 
D1I "C5'"  "C5'"  C 0 1 N N R 32.125 20.866 27.444 -4.060 1.377  -0.420 "C5'"  D1I 23 
D1I "O5'"  "O5'"  O 0 1 N N N 33.219 21.464 28.143 -2.724 1.101  0.008  "O5'"  D1I 24 
D1I "C6'"  "C6'"  C 0 1 N N N 32.158 19.405 27.875 -4.540 2.682  0.217  "C6'"  D1I 25 
D1I "O6'"  "O6'"  O 0 1 N N N 33.200 18.687 27.247 -3.754 3.770  -0.275 "O6'"  D1I 26 
D1I H6     H6     H 0 1 N N N 36.008 23.259 27.930 0.024  -0.394 -2.021 H6     D1I 27 
D1I H7     H7     H 0 1 N N N 38.185 24.361 29.479 3.055  -0.799 -2.137 H7     D1I 28 
D1I H19    H19    H 0 1 N N N 38.835 25.382 32.716 5.534  -1.689 0.596  H19    D1I 29 
D1I H29    H29    H 0 1 N N N 39.453 25.869 31.101 5.379  -1.534 -1.170 H29    D1I 30 
D1I "H1'"  "H1'"  H 0 1 N N N 32.238 23.246 27.802 -2.163 -0.014 -1.639 "H1'"  D1I 31 
D1I H110   H110   H 0 0 N N N 39.328 28.061 31.726 5.511  0.934  -0.965 H110   D1I 32 
D1I H210   H210   H 0 0 N N N 37.550 27.893 31.921 5.666  0.779  0.802  H210   D1I 33 
D1I H111   H111   H 0 0 N N N 39.000 28.779 33.938 7.748  -0.535 0.504  H111   D1I 34 
D1I H211   H211   H 0 0 N N N 37.692 27.586 34.245 7.593  -0.380 -1.263 H211   D1I 35 
D1I H112   H112   H 0 0 N N N 39.252 25.797 34.568 7.725  2.088  -1.057 H112   D1I 36 
D1I H212   H212   H 0 0 N N N 40.602 26.728 33.834 7.880  1.933  0.709  H212   D1I 37 
D1I H113   H113   H 0 0 N N N 40.805 26.659 36.321 9.962  0.619  0.411  H113   D1I 38 
D1I H213   H213   H 0 0 N N N 40.529 28.337 35.743 9.807  0.774  -1.355 H213   D1I 39 
D1I H313   H313   H 0 0 N N N 39.179 27.406 36.476 10.101 2.218  -0.357 H313   D1I 40 
D1I "H2'"  "H2'"  H 0 1 N N N 34.608 22.458 26.142 -2.980 -1.396 0.958  "H2'"  D1I 41 
D1I "HO2'" "HO2'" H 0 0 N N N 34.624 24.754 26.542 -2.974 -3.285 -0.505 "HO2'" D1I 42 
D1I "H3'"  "H3'"  H 0 1 N N N 31.640 23.006 25.613 -4.493 -1.031 -1.670 "H3'"  D1I 43 
D1I "HO3'" "HO3'" H 0 0 N N N 33.068 23.254 23.791 -6.198 -2.095 -0.373 "HO3'" D1I 44 
D1I "H4'"  "H4'"  H 0 1 N N N 33.215 20.409 25.653 -4.989 0.160  1.098  "H4'"  D1I 45 
D1I "HO4'" "HO4'" H 0 0 N N N 31.043 19.565 25.483 -6.939 -0.214 -0.233 "HO4'" D1I 46 
D1I "H5'"  "H5'"  H 0 1 N N N 31.167 21.322 27.734 -4.082 1.472  -1.505 "H5'"  D1I 47 
D1I "H16'" "H16'" H 0 0 N N N 31.198 18.937 27.614 -5.587 2.846  -0.036 "H16'" D1I 48 
D1I "H26'" "H26'" H 0 0 N N N 32.303 19.360 28.964 -4.434 2.618  1.300  "H26'" D1I 49 
D1I "HO6'" "HO6'" H 0 0 N N N 33.186 17.784 27.542 -4.004 4.631  0.087  "HO6'" D1I 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D1I "O3'" "C3'"  SING N N 1  
D1I "O4'" "C4'"  SING N N 2  
D1I "C3'" "C4'"  SING N N 3  
D1I "C3'" "C2'"  SING N N 4  
D1I "C4'" "C5'"  SING N N 5  
D1I "O2'" "C2'"  SING N N 6  
D1I "C2'" "C1'"  SING N N 7  
D1I "O6'" "C6'"  SING N N 8  
D1I "C5'" "C6'"  SING N N 9  
D1I "C5'" "O5'"  SING N N 10 
D1I "C1'" "O5'"  SING N N 11 
D1I "C1'" N1     SING N N 12 
D1I C6    N1     SING N N 13 
D1I C6    C5     DOUB N N 14 
D1I N1    C2     SING N N 15 
D1I C5    C7     SING N N 16 
D1I C5    C4     SING N N 17 
D1I C2    O2     DOUB N N 18 
D1I C2    N3     SING N N 19 
D1I C7    C8     DOUB N N 20 
D1I N3    C4     DOUB N N 21 
D1I C4    O5     SING N N 22 
D1I C8    O5     SING N N 23 
D1I C8    C9     SING N N 24 
D1I C9    C10    SING N N 25 
D1I C10   C11    SING N N 26 
D1I C11   C12    SING N N 27 
D1I C12   C13    SING N N 28 
D1I C6    H6     SING N N 29 
D1I C7    H7     SING N N 30 
D1I C9    H19    SING N N 31 
D1I C9    H29    SING N N 32 
D1I "C1'" "H1'"  SING N N 33 
D1I C10   H110   SING N N 34 
D1I C10   H210   SING N N 35 
D1I C11   H111   SING N N 36 
D1I C11   H211   SING N N 37 
D1I C12   H112   SING N N 38 
D1I C12   H212   SING N N 39 
D1I C13   H113   SING N N 40 
D1I C13   H213   SING N N 41 
D1I C13   H313   SING N N 42 
D1I "C2'" "H2'"  SING N N 43 
D1I "O2'" "HO2'" SING N N 44 
D1I "C3'" "H3'"  SING N N 45 
D1I "O3'" "HO3'" SING N N 46 
D1I "C4'" "H4'"  SING N N 47 
D1I "O4'" "HO4'" SING N N 48 
D1I "C5'" "H5'"  SING N N 49 
D1I "C6'" "H16'" SING N N 50 
D1I "C6'" "H26'" SING N N 51 
D1I "O6'" "HO6'" SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D1I SMILES           ACDLabs              12.01 "O=C1N=C3OC(=CC3=CN1C2OC(C(O)C(O)C2O)CO)CCCCC"                                                                                                                  
D1I InChI            InChI                1.03  "InChI=1S/C17H24N2O7/c1-2-3-4-5-10-6-9-7-19(17(24)18-15(9)25-10)16-14(23)13(22)12(21)11(8-20)26-16/h6-7,11-14,16,20-23H,2-5,8H2,1H3/t11-,12-,13+,14-,16-/m1/s1" 
D1I InChIKey         InChI                1.03  OPBPIQMYHFDOAO-XYFZXANASA-N                                                                                                                                     
D1I SMILES_CANONICAL CACTVS               3.370 "CCCCCC1=CC2=CN([C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)C(=O)N=C2O1"                                                                                          
D1I SMILES           CACTVS               3.370 "CCCCCC1=CC2=CN([CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)C(=O)N=C2O1"                                                                                                 
D1I SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCCC1=CC2=CN(C(=O)N=C2O1)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O"                                                                                        
D1I SMILES           "OpenEye OEToolkits" 1.7.6 "CCCCCC1=CC2=CN(C(=O)N=C2O1)C3C(C(C(C(O3)CO)O)O)O"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D1I "SYSTEMATIC NAME" ACDLabs              12.01 "3-(beta-D-glucopyranosyl)-6-pentylfuro[2,3-d]pyrimidin-2(3H)-one"                                         
D1I "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-6-pentyl-furo[2,3-d]pyrimidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D1I "Create component" 2012-04-10 RCSB 
# 
