data_C9I
# 
_chem_comp.id                                    C9I 
_chem_comp.name                                  "(5~{R})-3-(6-carbamimidoylpyridin-3-yl)-~{N}-[(1~{S})-1-naphthalen-1-ylpropyl]-2-oxidanylidene-1,3-oxazolidine-5-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H23 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-12-14 
_chem_comp.pdbx_modified_date                    2022-11-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        417.460 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C9I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7QI0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C9I CAA C1  C 0 1 Y N N 12.302 9.847  -1.770 5.960  0.649  -0.844 CAA C9I 1  
C9I CAB C2  C 0 1 Y N N 12.810 9.611  -0.495 6.273  -0.529 -0.169 CAB C9I 2  
C9I CAD C3  C 0 1 Y N N 11.799 7.408  -0.602 4.153  -0.656 0.734  CAD C9I 3  
C9I CAE C4  C 0 1 Y N N 11.273 7.671  -1.874 3.773  0.523  0.099  CAE C9I 4  
C9I CAF C5  C 0 1 Y N N 11.516 8.902  -2.443 4.693  1.187  -0.710 CAF C9I 5  
C9I CAG C6  C 0 1 N N N 13.570 10.636 0.150  7.628  -1.111 -0.299 CAG C9I 6  
C9I CAK C7  C 0 1 N N N 10.382 5.379  -1.849 1.417  0.413  1.068  CAK C9I 7  
C9I CAL C8  C 0 1 N N R 9.546  4.617  -2.936 0.219  1.366  0.892  CAL C9I 8  
C9I CAN C9  C 0 1 N N N 9.908  6.803  -3.697 2.006  2.148  -0.303 CAN C9I 9  
C9I CAP C10 C 0 1 N N N 10.342 3.460  -3.586 -0.939 0.646  0.251  CAP C9I 10 
C9I CAR C11 C 0 1 N N S 10.271 1.364  -4.897 -2.676 -1.063 0.281  CAR C9I 11 
C9I CAS C12 C 0 1 Y N N 10.978 1.861  -6.073 -3.953 -0.319 0.574  CAS C9I 12 
C9I CAU C13 C 0 1 N N N 9.209  0.302  -5.235 -2.770 -2.482 0.846  CAU C9I 13 
C9I CAV C14 C 0 1 N N N 8.713  -0.433 -3.956 -1.527 -3.276 0.442  CAV C9I 14 
C9I CAW C15 C 0 1 Y N N 12.155 1.283  -6.618 -5.046 -0.418 -0.305 CAW C9I 15 
C9I CAX C16 C 0 1 Y N N 12.799 1.854  -7.773 -6.239 0.288  -0.012 CAX C9I 16 
C9I CAY C17 C 0 1 Y N N 12.325 3.019  -8.395 -6.306 1.074  1.151  CAY C9I 17 
C9I CAZ C18 C 0 1 Y N N 11.189 3.585  -7.838 -5.228 1.147  1.979  CAZ C9I 18 
C9I CBA C19 C 0 1 Y N N 10.545 3.028  -6.710 -4.057 0.447  1.694  CBA C9I 19 
C9I CBB C20 C 0 1 Y N N 12.699 0.125  -6.057 -4.978 -1.205 -1.467 CBB C9I 20 
C9I CBC C21 C 0 1 Y N N 13.873 -0.432 -6.630 -6.057 -1.277 -2.294 CBC C9I 21 
C9I CBD C22 C 0 1 Y N N 14.493 0.135  -7.757 -7.230 -0.582 -2.007 CBD C9I 22 
C9I CBE C23 C 0 1 Y N N 13.962 1.274  -8.324 -7.331 0.189  -0.890 CBE C9I 23 
C9I NAC N1  N 0 1 Y N N 12.566 8.406  0.071  5.368  -1.136 0.590  NAC C9I 24 
C9I NAH N2  N 0 1 N N N 10.559 6.749  -2.502 2.480  1.026  0.258  NAH C9I 25 
C9I NAI N3  N 0 1 N N N 13.952 11.708 -0.578 8.521  -0.521 -1.041 NAI C9I 26 
C9I NAJ N4  N 0 1 N N N 13.907 10.514 1.451  7.945  -2.276 0.365  NAJ C9I 27 
C9I NAQ N5  N 0 1 N N N 9.600  2.486  -4.190 -1.549 -0.363 0.904  NAQ C9I 28 
C9I OAM O1  O 0 1 N N N 9.259  5.629  -3.971 0.726  2.410  0.010  OAM C9I 29 
C9I OAO O2  O 0 1 N N N 9.898  7.785  -4.466 2.672  2.861  -1.026 OAO C9I 30 
C9I OAT O3  O 0 1 N N N 11.580 3.448  -3.519 -1.323 0.976  -0.851 OAT C9I 31 
C9I H1  H1  H 0 1 N N N 12.520 10.787 -2.255 6.700  1.140  -1.459 H1  C9I 32 
C9I H2  H2  H 0 1 N N N 11.624 6.452  -0.132 3.444  -1.177 1.360  H2  C9I 33 
C9I H3  H3  H 0 1 N N N 11.099 9.139  -3.411 4.423  2.099  -1.221 H3  C9I 34 
C9I H4  H4  H 0 1 N N N 9.832  5.455  -0.900 1.715  0.362  2.115  H4  C9I 35 
C9I H5  H5  H 0 1 N N N 11.351 4.890  -1.673 1.173  -0.581 0.692  H5  C9I 36 
C9I H6  H6  H 0 1 N N N 8.617  4.232  -2.490 -0.078 1.788  1.852  H6  C9I 37 
C9I H7  H7  H 0 1 N N N 10.999 0.906  -4.212 -2.522 -1.111 -0.797 H7  C9I 38 
C9I H8  H8  H 0 1 N N N 8.353  0.794  -5.720 -2.834 -2.436 1.934  H8  C9I 39 
C9I H9  H9  H 0 1 N N N 9.647  -0.435 -5.924 -3.659 -2.972 0.450  H9  C9I 40 
C9I H10 H10 H 0 1 N N N 7.957  -1.183 -4.233 -1.463 -3.322 -0.645 H10 C9I 41 
C9I H11 H11 H 0 1 N N N 9.563  -0.932 -3.467 -0.637 -2.785 0.838  H11 C9I 42 
C9I H12 H12 H 0 1 N N N 8.269  0.297  -3.263 -1.594 -4.286 0.845  H12 C9I 43 
C9I H13 H13 H 0 1 N N N 12.816 3.449  -9.256 -7.207 1.622  1.385  H13 C9I 44 
C9I H14 H14 H 0 1 N N N 10.782 4.482  -8.281 -5.283 1.752  2.872  H14 C9I 45 
C9I H15 H15 H 0 1 N N N 9.672  3.530  -6.319 -3.216 0.522  2.367  H15 C9I 46 
C9I H16 H16 H 0 1 N N N 12.234 -0.340 -5.200 -4.076 -1.748 -1.703 H16 C9I 47 
C9I H17 H17 H 0 1 N N N 14.302 -1.318 -6.186 -6.003 -1.882 -3.187 H17 C9I 48 
C9I H18 H18 H 0 1 N N N 15.379 -0.318 -8.176 -8.071 -0.656 -2.680 H18 C9I 49 
C9I H19 H19 H 0 1 N N N 14.434 1.721  -9.186 -8.247 0.722  -0.679 H19 C9I 50 
C9I H20 H20 H 0 1 N N N 14.489 12.356 -0.038 9.409  -0.902 -1.126 H20 C9I 51 
C9I H21 H21 H 0 1 N N N 13.625 9.705  1.967  7.280  -2.716 0.918  H21 C9I 52 
C9I H22 H22 H 0 1 N N N 14.439 11.233 1.899  8.833  -2.657 0.280  H22 C9I 53 
C9I H23 H23 H 0 1 N N N 8.601  2.528  -4.157 -1.242 -0.627 1.785  H23 C9I 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C9I CAY CAZ DOUB Y N 1  
C9I CAY CAX SING Y N 2  
C9I CBE CAX DOUB Y N 3  
C9I CBE CBD SING Y N 4  
C9I CAZ CBA SING Y N 5  
C9I CAX CAW SING Y N 6  
C9I CBD CBC DOUB Y N 7  
C9I CBA CAS DOUB Y N 8  
C9I CBC CBB SING Y N 9  
C9I CAW CAS SING Y N 10 
C9I CAW CBB DOUB Y N 11 
C9I CAS CAR SING N N 12 
C9I CAU CAR SING N N 13 
C9I CAU CAV SING N N 14 
C9I CAR NAQ SING N N 15 
C9I OAO CAN DOUB N N 16 
C9I NAQ CAP SING N N 17 
C9I OAM CAN SING N N 18 
C9I OAM CAL SING N N 19 
C9I CAN NAH SING N N 20 
C9I CAP OAT DOUB N N 21 
C9I CAP CAL SING N N 22 
C9I CAL CAK SING N N 23 
C9I NAH CAE SING N N 24 
C9I NAH CAK SING N N 25 
C9I CAF CAE DOUB Y N 26 
C9I CAF CAA SING Y N 27 
C9I CAE CAD SING Y N 28 
C9I CAA CAB DOUB Y N 29 
C9I CAD NAC DOUB Y N 30 
C9I NAI CAG DOUB N N 31 
C9I CAB NAC SING Y N 32 
C9I CAB CAG SING N N 33 
C9I CAG NAJ SING N N 34 
C9I CAA H1  SING N N 35 
C9I CAD H2  SING N N 36 
C9I CAF H3  SING N N 37 
C9I CAK H4  SING N N 38 
C9I CAK H5  SING N N 39 
C9I CAL H6  SING N N 40 
C9I CAR H7  SING N N 41 
C9I CAU H8  SING N N 42 
C9I CAU H9  SING N N 43 
C9I CAV H10 SING N N 44 
C9I CAV H11 SING N N 45 
C9I CAV H12 SING N N 46 
C9I CAY H13 SING N N 47 
C9I CAZ H14 SING N N 48 
C9I CBA H15 SING N N 49 
C9I CBB H16 SING N N 50 
C9I CBC H17 SING N N 51 
C9I CBD H18 SING N N 52 
C9I CBE H19 SING N N 53 
C9I NAI H20 SING N N 54 
C9I NAJ H21 SING N N 55 
C9I NAJ H22 SING N N 56 
C9I NAQ H23 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C9I InChI            InChI                1.06  "InChI=1S/C23H23N5O3/c1-2-18(17-9-5-7-14-6-3-4-8-16(14)17)27-22(29)20-13-28(23(30)31-20)15-10-11-19(21(24)25)26-12-15/h3-12,18,20H,2,13H2,1H3,(H3,24,25)(H,27,29)/t18-,20+/m0/s1" 
C9I InChIKey         InChI                1.06  QAGBDIKHIHPMIP-AZUAARDMSA-N                                                                                                                                                       
C9I SMILES_CANONICAL CACTVS               3.385 "CC[C@H](NC(=O)[C@H]1CN(C(=O)O1)c2ccc(nc2)C(N)=N)c3cccc4ccccc34"                                                                                                                  
C9I SMILES           CACTVS               3.385 "CC[CH](NC(=O)[CH]1CN(C(=O)O1)c2ccc(nc2)C(N)=N)c3cccc4ccccc34"                                                                                                                    
C9I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/c1ccc(cn1)N2C[C@@H](OC2=O)C(=O)N[C@@H](CC)c3cccc4c3cccc4)\N"                                                                                                            
C9I SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(c1cccc2c1cccc2)NC(=O)C3CN(C(=O)O3)c4ccc(nc4)C(=N)N"                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           C9I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(5~{R})-3-(6-carbamimidoylpyridin-3-yl)-~{N}-[(1~{S})-1-naphthalen-1-ylpropyl]-2-oxidanylidene-1,3-oxazolidine-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C9I "Create component"  2021-12-14 PDBE 
C9I "Modify descriptor" 2022-08-22 RCSB 
C9I "Initial release"   2022-11-23 RCSB 
# 
