data_BNI
#

_chem_comp.id                                   BNI
_chem_comp.name                                 "5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H20 N4 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "BIOTINYL P-NITROANILINE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2001-03-23
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       364.419
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BNI
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1IJ8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BNI  C1    C1    C   0  1  N  N  N  -4.478  31.383  28.456  -1.822  -0.790  -0.146  C1    BNI   1  
BNI  C10   C10   C   0  1  N  N  N  -4.981  29.983  27.917  -0.483  -1.461  -0.310  C10   BNI   2  
BNI  C9    C9    C   0  1  N  N  N  -3.632  29.297  27.638   0.609  -0.397  -0.439  C9    BNI   3  
BNI  C8    C8    C   0  1  N  N  N  -3.269  28.560  26.384   1.968  -1.078  -0.606  C8    BNI   4  
BNI  C7    C7    C   0  1  N  N  N  -2.528  29.718  25.716   3.060  -0.014  -0.735  C7    BNI   5  
BNI  C2    C2    C   0  1  N  N  S  -1.826  29.778  24.335   4.420  -0.695  -0.902  C2    BNI   6  
BNI  C6    C6    C   0  1  N  N  N  -1.270  29.824  21.778   6.760  -1.347   0.433  C6    BNI   7  
BNI  C4    C4    C   0  1  N  N  S  -0.682  28.722  23.987   5.544   0.347  -1.078  C4    BNI   8  
BNI  C5    C5    C   0  1  N  N  R  -0.197  28.973  22.567   6.838  -0.013  -0.340  C5    BNI   9  
BNI  C3    C3    C   0  1  N  N  N  -0.427  26.715  22.885   6.011   1.959   0.482  C3    BNI  10  
BNI  O2    O2    O   0  1  N  N  N  -5.318  32.192  28.778  -1.896   0.421  -0.133  O2    BNI  11  
BNI  O3    O3    O   0  1  N  N  N  -0.406  25.521  22.629   5.910   2.969   1.152  O3    BNI  12  
BNI  N1    N1    N   0  1  N  N  N  -0.073  27.656  21.986   7.020   1.088   0.619  N1    BNI  13  
BNI  N2    N2    N   0  1  N  N  N  -0.803  27.264  24.087   5.124   1.616  -0.462  N2    BNI  14  
BNI  S1    S1    S   0  1  N  N  N  -2.819  29.648  22.860   4.938  -1.532   0.660  S1    BNI  15  
BNI  N17   N17   N   0  1  N  N  N  -3.126  31.585  28.515  -2.937  -1.535  -0.013  N17   BNI  16  
BNI  C18   C18   C   0  1  Y  N  N  -2.331  32.362  29.351  -4.192  -0.916   0.024  C18   BNI  17  
BNI  C20   C20   C   0  1  Y  N  N  -2.531  33.768  29.600  -4.420   0.239  -0.713  C20   BNI  18  
BNI  C21   C21   C   0  1  Y  N  N  -1.622  34.471  30.498  -5.659   0.848  -0.674  C21   BNI  19  
BNI  C22   C22   C   0  1  Y  N  N  -0.511  33.756  31.144  -6.672   0.309   0.099  C22   BNI  20  
BNI  C23   C23   C   0  1  Y  N  N  -0.330  32.357  30.881  -6.446  -0.838   0.838  C23   BNI  21  
BNI  C24   C24   C   0  1  Y  N  N  -1.226  31.676  30.001  -5.211  -1.454   0.799  C24   BNI  22  
BNI  N25   N25   N   1  1  N  N  N   0.465  34.468  32.096  -7.998   0.964   0.139  N25   BNI  23  
BNI  O26   O26   O   0  1  N  N  N   0.363  35.640  32.355  -8.893   0.487   0.814  O26   BNI  24  
BNI  O27   O27   O  -1  1  N  N  N   1.369  33.871  32.616  -8.197   1.977  -0.508  O27   BNI  25  
BNI  H101  1H10  H   0  0  N  N  N  -5.677  29.427  28.587  -0.280  -2.086   0.560  H101  BNI  26  
BNI  H102  2H10  H   0  0  N  N  N  -5.691  30.021  27.058  -0.494  -2.080  -1.207  H102  BNI  27  
BNI  H91   1H9   H   0  1  N  N  N  -2.845  30.072  27.788   0.406   0.228  -1.309  H91   BNI  28  
BNI  H92   2H9   H   0  1  N  N  N  -3.454  28.591  28.482   0.620   0.222   0.458  H92   BNI  29  
BNI  H81   1H8   H   0  1  N  N  N  -2.718  27.597  26.497   2.171  -1.703   0.264  H81   BNI  30  
BNI  H82   2H8   H   0  1  N  N  N  -4.099  28.085  25.810   1.957  -1.697  -1.503  H82   BNI  31  
BNI  H71   1H7   H   0  1  N  N  N  -3.253  30.565  25.712   2.858   0.611  -1.605  H71   BNI  32  
BNI  H72   2H7   H   0  1  N  N  N  -1.751  30.031  26.452   3.072   0.605   0.162  H72   BNI  33  
BNI  H21A  1H2   H   0  0  N  N  N  -1.438  30.803  24.540   4.403  -1.398  -1.735  H21A  BNI  34  
BNI  H61   1H6   H   0  1  N  N  N  -0.966  30.875  21.563   7.269  -1.273   1.394  H61   BNI  35  
BNI  H62   2H6   H   0  1  N  N  N  -1.408  29.529  20.711   7.166  -2.167  -0.160  H62   BNI  36  
BNI  HC4   HC4   H   0  1  N  N  N  -0.030  28.948  24.863   5.747   0.496  -2.139  HC4   BNI  37  
BNI  HC5   HC5   H   0  1  N  N  N   0.762  29.539  22.533   7.669  -0.036  -1.044  HC5   BNI  38  
BNI  HN11  1HN1  H   0  0  N  N  N   0.860  27.491  21.610   7.753   1.170   1.250  HN11  BNI  39  
BNI  HN21  1HN2  H   0  0  N  N  N  -1.107  26.706  24.885   4.332   2.123  -0.701  HN21  BNI  40  
BNI  H171  1H17  H   0  0  N  N  N  -2.616  31.059  27.804  -2.871  -2.500   0.056  H171  BNI  41  
BNI  H20   H20   H   0  1  N  N  N  -3.366  34.297  29.111  -3.630   0.660  -1.316  H20   BNI  42  
BNI  H21   H21   H   0  1  N  N  N  -1.775  35.546  30.689  -5.837   1.746  -1.247  H21   BNI  43  
BNI  H23   H23   H   0  1  N  N  N   0.498  31.804  31.355  -7.239  -1.256   1.440  H23   BNI  44  
BNI  H24   H24   H   0  1  N  N  N  -1.061  30.600  29.820  -5.036  -2.353   1.373  H24   BNI  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BNI  C1   C10   SING  N  N   1  
BNI  C1   O2    DOUB  N  N   2  
BNI  C1   N17   SING  N  N   3  
BNI  C10  C9    SING  N  N   4  
BNI  C10  H101  SING  N  N   5  
BNI  C10  H102  SING  N  N   6  
BNI  C9   C8    SING  N  N   7  
BNI  C9   H91   SING  N  N   8  
BNI  C9   H92   SING  N  N   9  
BNI  C8   C7    SING  N  N  10  
BNI  C8   H81   SING  N  N  11  
BNI  C8   H82   SING  N  N  12  
BNI  C7   C2    SING  N  N  13  
BNI  C7   H71   SING  N  N  14  
BNI  C7   H72   SING  N  N  15  
BNI  C2   C4    SING  N  N  16  
BNI  C2   S1    SING  N  N  17  
BNI  C2   H21A  SING  N  N  18  
BNI  C6   C5    SING  N  N  19  
BNI  C6   S1    SING  N  N  20  
BNI  C6   H61   SING  N  N  21  
BNI  C6   H62   SING  N  N  22  
BNI  C4   C5    SING  N  N  23  
BNI  C4   N2    SING  N  N  24  
BNI  C4   HC4   SING  N  N  25  
BNI  C5   N1    SING  N  N  26  
BNI  C5   HC5   SING  N  N  27  
BNI  C3   O3    DOUB  N  N  28  
BNI  C3   N1    SING  N  N  29  
BNI  C3   N2    SING  N  N  30  
BNI  N1   HN11  SING  N  N  31  
BNI  N2   HN21  SING  N  N  32  
BNI  N17  C18   SING  N  N  33  
BNI  N17  H171  SING  N  N  34  
BNI  C18  C20   DOUB  Y  N  35  
BNI  C18  C24   SING  Y  N  36  
BNI  C20  C21   SING  Y  N  37  
BNI  C20  H20   SING  N  N  38  
BNI  C21  C22   DOUB  Y  N  39  
BNI  C21  H21   SING  N  N  40  
BNI  C22  C23   SING  Y  N  41  
BNI  C22  N25   SING  N  N  42  
BNI  C23  C24   DOUB  Y  N  43  
BNI  C23  H23   SING  N  N  44  
BNI  C24  H24   SING  N  N  45  
BNI  N25  O26   DOUB  N  N  46  
BNI  N25  O27   SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BNI  SMILES            ACDLabs               10.04  "O=C1NC2C(SCC2N1)CCCCC(=O)Nc3ccc([N+]([O-])=O)cc3"  
BNI  SMILES_CANONICAL  CACTVS                3.341  "[O-][N+](=O)c1ccc(NC(=O)CCCC[C@@H]2SC[C@@H]3NC(=O)N[C@H]23)cc1"  
BNI  SMILES            CACTVS                3.341  "[O-][N+](=O)c1ccc(NC(=O)CCCC[CH]2SC[CH]3NC(=O)N[CH]23)cc1"  
BNI  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1cc(ccc1NC(=O)CCCC[C@H]2[C@@H]3[C@H](CS2)NC(=O)N3)[N+](=O)[O-]"  
BNI  SMILES            "OpenEye OEToolkits"  1.5.0  "c1cc(ccc1NC(=O)CCCCC2C3C(CS2)NC(=O)N3)[N+](=O)[O-]"  
BNI  InChI             InChI                 1.03   "InChI=1S/C16H20N4O4S/c21-14(17-10-5-7-11(8-6-10)20(23)24)4-2-1-3-13-15-12(9-25-13)18-16(22)19-15/h5-8,12-13,15H,1-4,9H2,(H,17,21)(H2,18,19,22)/t12-,13-,15-/m0/s1"  
BNI  InChIKey          InChI                 1.03   PORZMUYPQKOFQY-YDHLFZDLSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BNI  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-(4-nitrophenyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide"  
BNI  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[4,3-d]imidazol-4-yl]-N-(4-nitrophenyl)pentanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BNI  "Create component"   2001-03-23  RCSB  
BNI  "Modify descriptor"  2011-06-04  RCSB  
BNI  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     BNI
_pdbx_chem_comp_synonyms.name        "BIOTINYL P-NITROANILINE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
