data_B9I
# 
_chem_comp.id                                    B9I 
_chem_comp.name                                  
;(2~{S},3~{S},4~{S},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-[(1~{R})-6'-oxidanyl-3-oxidanylidene-spiro[2-benzofuran-1,9'-xanthene]-3'-yl]oxy-oxane-2-carboxylic acid
;
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H20 O11" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-12-07 
_chem_comp.pdbx_modified_date                    2022-10-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        508.430 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B9I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7QEA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B9I C2  C1  C 0 1 N N R 9.735  -19.325 35.380 -2.784 -0.336 -0.472 C2  B9I 1  
B9I C4  C2  C 0 1 Y N N 8.327  -17.831 33.899 -3.616 1.821  0.512  C4  B9I 2  
B9I C5  C3  C 0 1 Y N N 10.638 -17.371 34.037 -1.297 1.451  0.482  C5  B9I 3  
B9I C6  C4  C 0 1 Y N N 10.866 -18.447 34.883 -1.429 0.278  -0.243 C6  B9I 4  
B9I O6  O1  O 0 1 N N N 11.601 -13.049 33.712 3.916  -2.380 1.526  O6  B9I 5  
B9I C8  C5  C 0 1 Y N N 13.238 -17.906 34.716 0.945  0.204  -0.570 C8  B9I 6  
B9I O8  O2  O 0 1 N N N 14.303 -11.229 33.993 7.027  -0.878 -0.459 O8  B9I 7  
B9I O2  O3  O 0 1 N N N 10.088 -20.755 35.055 -2.878 -0.805 -1.850 O2  B9I 8  
B9I O4  O4  O 0 1 N N N 13.879 -15.962 33.336 2.316  1.919  0.348  O4  B9I 9  
B9I C7  C6  C 0 1 Y N N 12.214 -18.697 35.197 -0.307 -0.343 -0.766 C7  B9I 10 
B9I C1  C7  C 0 1 N N N 10.602 -21.357 36.172 -3.090 -2.136 -1.850 C1  B9I 11 
B9I C10 C8  C 0 1 N N S 14.838 -15.378 34.195 3.425  1.223  -0.223 C10 B9I 12 
B9I C11 C9  C 0 1 N N R 15.810 -14.596 33.310 4.704  2.037  -0.008 C11 B9I 13 
B9I C12 C10 C 0 1 N N S 15.776 -13.121 33.611 5.897  1.258  -0.569 C12 B9I 14 
B9I C13 C11 C 0 1 N N S 14.335 -12.636 33.731 5.961  -0.114 0.108  C13 B9I 15 
B9I C14 C12 C 0 1 N N S 13.632 -13.349 34.895 4.634  -0.845 -0.111 C14 B9I 16 
B9I C15 C13 C 0 1 N N N 12.110 -13.421 34.734 4.667  -2.172 0.603  C15 B9I 17 
B9I C16 C14 C 0 1 Y N N 11.639 -16.561 33.542 -0.037 2.001  0.680  C16 B9I 18 
B9I C17 C15 C 0 1 Y N N 7.142  -17.452 33.302 -4.636 2.737  0.740  C17 B9I 19 
B9I C18 C16 C 0 1 Y N N 6.007  -18.201 33.523 -5.908 2.495  0.248  C18 B9I 20 
B9I C25 C17 C 0 1 Y N N 6.063  -19.323 34.339 -6.162 1.337  -0.473 C25 B9I 21 
B9I C26 C18 C 0 1 Y N N 7.258  -19.680 34.926 -5.147 0.429  -0.700 C26 B9I 22 
B9I C27 C19 C 0 1 Y N N 9.569  -19.434 36.883 -2.965 -1.543 0.394  C27 B9I 23 
B9I C28 C20 C 0 1 Y N N 10.074 -20.643 37.330 -3.151 -2.634 -0.476 C28 B9I 24 
B9I C29 C21 C 0 1 Y N N 10.029 -21.020 38.673 -3.351 -3.923 0.025  C29 B9I 25 
B9I C3  C22 C 0 1 Y N N 8.439  -18.950 34.709 -3.875 0.668  -0.210 C3  B9I 26 
B9I C30 C23 C 0 1 Y N N 9.438  -20.135 39.546 -3.356 -4.064 1.404  C30 B9I 27 
B9I C31 C24 C 0 1 Y N N 8.907  -18.930 39.109 -3.172 -2.987 2.249  C31 B9I 28 
B9I C32 C25 C 0 1 Y N N 8.941  -18.560 37.775 -2.971 -1.699 1.762  C32 B9I 29 
B9I C9  C26 C 0 1 Y N N 12.947 -16.826 33.884 1.083  1.380  0.154  C9  B9I 30 
B9I O1  O5  O 0 1 N N N 11.307 -22.348 36.111 -3.213 -2.822 -2.845 O1  B9I 31 
B9I O10 O6  O 0 1 N N N 17.125 -15.130 33.435 4.591  3.291  -0.685 O10 B9I 32 
B9I O11 O7  O 0 1 N N N 4.837  -17.793 32.912 -6.906 3.391  0.472  O11 B9I 33 
B9I O3  O8  O 0 1 N N N 9.385  -17.000 33.611 -2.380 2.075  1.004  O3  B9I 34 
B9I O5  O9  O 0 1 N N N 11.425 -13.819 35.662 5.531  -3.122 0.214  O5  B9I 35 
B9I O7  O10 O 0 1 N N N 14.229 -14.609 35.230 3.563  -0.053 0.406  O7  B9I 36 
B9I O9  O11 O 0 1 N N N 16.477 -12.423 32.580 7.104  1.977  -0.308 O9  B9I 37 
B9I H1  H1  H 0 1 N N N 14.262 -18.123 34.983 1.817  -0.284 -0.980 H1  B9I 38 
B9I H2  H2  H 0 1 N N N 13.401 -10.940 34.065 7.126  -1.760 -0.076 H2  B9I 39 
B9I H3  H3  H 0 1 N N N 12.456 -19.534 35.835 -0.413 -1.258 -1.329 H3  B9I 40 
B9I H4  H4  H 0 1 N N N 15.416 -16.187 34.666 3.257  1.085  -1.291 H4  B9I 41 
B9I H5  H5  H 0 1 N N N 15.478 -14.727 32.269 4.850  2.211  1.058  H5  B9I 42 
B9I H6  H6  H 0 1 N N N 16.277 -12.951 34.575 5.774  1.128  -1.645 H6  B9I 43 
B9I H7  H7  H 0 1 N N N 13.800 -12.864 32.797 6.134  0.015  1.177  H7  B9I 44 
B9I H8  H8  H 0 1 N N N 13.794 -12.696 35.765 4.482  -1.010 -1.178 H8  B9I 45 
B9I H9  H9  H 0 1 N N N 11.400 -15.730 32.895 0.069  2.916  1.244  H9  B9I 46 
B9I H10 H10 H 0 1 N N N 7.105  -16.578 32.669 -4.437 3.637  1.302  H10 B9I 47 
B9I H11 H11 H 0 1 N N N 5.175  -19.913 34.513 -7.154 1.145  -0.857 H11 B9I 48 
B9I H12 H12 H 0 1 N N N 7.287  -20.546 35.571 -5.347 -0.472 -1.261 H12 B9I 49 
B9I H13 H13 H 0 1 N N N 10.438 -21.961 39.011 -3.496 -4.769 -0.631 H13 B9I 50 
B9I H14 H14 H 0 1 N N N 9.386  -20.384 40.596 -3.508 -5.045 1.830  H14 B9I 51 
B9I H15 H15 H 0 1 N N N 8.455  -18.263 39.828 -3.185 -3.149 3.316  H15 B9I 52 
B9I H16 H16 H 0 1 N N N 8.500  -17.634 37.437 -2.828 -0.860 2.427  H16 B9I 53 
B9I H17 H17 H 0 1 N N N 17.110 -16.059 33.239 3.855  3.838  -0.379 H17 B9I 54 
B9I H18 H18 H 0 1 N N N 4.134  -18.389 33.143 -6.985 4.069  -0.212 H18 B9I 55 
B9I H19 H19 H 0 1 N N N 10.507 -13.773 35.421 5.516  -3.957 0.702  H19 B9I 56 
B9I H20 H20 H 0 1 N N N 16.461 -11.491 32.761 7.129  2.860  -0.702 H20 B9I 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B9I O9  C12 SING N N 1  
B9I O11 C18 SING N N 2  
B9I C17 C18 DOUB Y N 3  
B9I C17 C4  SING Y N 4  
B9I C11 O10 SING N N 5  
B9I C11 C12 SING N N 6  
B9I C11 C10 SING N N 7  
B9I O4  C9  SING N N 8  
B9I O4  C10 SING N N 9  
B9I C18 C25 SING Y N 10 
B9I C16 C9  DOUB Y N 11 
B9I C16 C5  SING Y N 12 
B9I O3  C4  SING N N 13 
B9I O3  C5  SING N N 14 
B9I C12 C13 SING N N 15 
B9I O6  C15 DOUB N N 16 
B9I C13 O8  SING N N 17 
B9I C13 C14 SING N N 18 
B9I C9  C8  SING Y N 19 
B9I C4  C3  DOUB Y N 20 
B9I C5  C6  DOUB Y N 21 
B9I C10 O7  SING N N 22 
B9I C25 C26 DOUB Y N 23 
B9I C3  C26 SING Y N 24 
B9I C3  C2  SING N N 25 
B9I C8  C7  DOUB Y N 26 
B9I C15 C14 SING N N 27 
B9I C15 O5  SING N N 28 
B9I C6  C7  SING Y N 29 
B9I C6  C2  SING N N 30 
B9I C14 O7  SING N N 31 
B9I O2  C2  SING N N 32 
B9I O2  C1  SING N N 33 
B9I C2  C27 SING N N 34 
B9I O1  C1  DOUB N N 35 
B9I C1  C28 SING N N 36 
B9I C27 C28 DOUB Y N 37 
B9I C27 C32 SING Y N 38 
B9I C28 C29 SING Y N 39 
B9I C32 C31 DOUB Y N 40 
B9I C29 C30 DOUB Y N 41 
B9I C31 C30 SING Y N 42 
B9I C8  H1  SING N N 43 
B9I O8  H2  SING N N 44 
B9I C7  H3  SING N N 45 
B9I C10 H4  SING N N 46 
B9I C11 H5  SING N N 47 
B9I C12 H6  SING N N 48 
B9I C13 H7  SING N N 49 
B9I C14 H8  SING N N 50 
B9I C16 H9  SING N N 51 
B9I C17 H10 SING N N 52 
B9I C25 H11 SING N N 53 
B9I C26 H12 SING N N 54 
B9I C29 H13 SING N N 55 
B9I C30 H14 SING N N 56 
B9I C31 H15 SING N N 57 
B9I C32 H16 SING N N 58 
B9I O10 H17 SING N N 59 
B9I O11 H18 SING N N 60 
B9I O5  H19 SING N N 61 
B9I O9  H20 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B9I InChI            InChI                1.06  "InChI=1S/C26H20O11/c27-11-5-7-15-17(9-11)35-18-10-12(34-25-21(30)19(28)20(29)22(36-25)23(31)32)6-8-16(18)26(15)14-4-2-1-3-13(14)24(33)37-26/h1-10,19-22,25,27-30H,(H,31,32)/t19-,20-,21+,22-,25+,26+/m0/s1" 
B9I InChIKey         InChI                1.06  RSSKCAKCONQQRX-MDPQNUMESA-N                                                                                                                                                                                  
B9I SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1[C@@H](O)[C@@H](O[C@@H]([C@H]1O)C(O)=O)Oc2ccc3c(Oc4cc(O)ccc4[C@@]35OC(=O)c6ccccc56)c2"                                                                                                              
B9I SMILES           CACTVS               3.385 "O[CH]1[CH](O)[CH](O[CH]([CH]1O)C(O)=O)Oc2ccc3c(Oc4cc(O)ccc4[C]35OC(=O)c6ccccc56)c2"                                                                                                                         
B9I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=O)O[C@@]23c4ccc(cc4Oc5c3ccc(c5)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)C(=O)O)O)O)O)O"                                                                                                            
B9I SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=O)OC23c4ccc(cc4Oc5c3ccc(c5)OC6C(C(C(C(O6)C(=O)O)O)O)O)O"                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           B9I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        
;(2~{S},3~{S},4~{S},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-[(1~{R})-6'-oxidanyl-3-oxidanylidene-spiro[2-benzofuran-1,9'-xanthene]-3'-yl]oxy-oxane-2-carboxylic acid
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B9I "Create component"  2021-12-07 PDBE 
B9I "Modify descriptor" 2022-08-22 RCSB 
B9I "Initial release"   2022-10-12 RCSB 
# 
