data_B8I
# 
_chem_comp.id                                    B8I 
_chem_comp.name                                  "methyl 4-[4-[[6-(cyanomethyl)-2-[(1-methylpyrazol-4-yl)amino]-5-oxidanylidene-pyrido[4,3-d]pyrimidin-4-yl]amino]cyclohexyl]piperazine-1-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H32 N10 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-12-07 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        520.587 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B8I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7QG1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B8I C1  C1  C 0 1 N N N 14.301 -39.118 -10.871 -4.569 5.393  -1.111 C1  B8I 1  
B8I C2  C2  C 0 1 Y N N 5.494  -37.717 -8.328  -5.564 -2.921 -0.093 C2  B8I 2  
B8I C3  C3  C 0 1 Y N N 5.061  -37.074 -6.259  -4.351 -4.792 -0.036 C3  B8I 3  
B8I C7  C4  C 0 1 Y N N 9.266  -37.922 -9.647  -2.004 0.702  0.379  C7  B8I 4  
B8I C8  C5  C 0 1 Y N N 8.484  -37.663 -7.489  -3.141 -1.309 0.199  C8  B8I 5  
B8I C9  C6  C 0 1 N N N 12.046 -37.504 -7.217  -5.690 1.314  0.036  C9  B8I 6  
B8I C10 C7  C 0 1 N N N 13.094 -37.629 -8.023  -5.703 2.658  0.080  C10 B8I 7  
B8I C11 C8  C 0 1 N N N 11.734 -37.929 -10.013 -3.346 2.828  0.319  C11 B8I 8  
B8I C12 C9  C 0 1 N N N 1.040  -38.884 -16.076 8.599  -0.653 -0.439 C12 B8I 9  
B8I C13 C10 C 0 1 N N N 6.243  -38.869 -13.395 2.792  0.788  1.478  C13 B8I 10 
B8I C14 C11 C 0 1 N N N 5.746  -36.677 -12.229 2.299  -0.381 -0.674 C14 B8I 11 
B8I C15 C12 C 0 1 N N N 7.606  -38.874 -12.738 1.465  1.541  1.373  C15 B8I 12 
B8I C16 C13 C 0 1 N N N 7.165  -36.638 -11.697 0.972  0.372  -0.779 C16 B8I 13 
B8I C19 C14 C 0 1 N N N 3.406  -38.344 -13.474 5.564  0.513  0.977  C19 B8I 14 
B8I C20 C15 C 0 1 N N N 4.368  -37.638 -15.574 5.127  -0.554 -1.157 C20 B8I 15 
B8I C21 C16 C 0 1 N N N 5.691  -37.454 -13.551 3.318  0.481  0.074  C21 B8I 16 
B8I C22 C17 C 0 1 N N N 7.635  -38.072 -11.449 0.447  0.679  0.625  C22 B8I 17 
B8I C24 C18 C 0 1 N N N -1.048 -39.570 -15.385 10.832 0.081  -0.024 C24 B8I 18 
B8I N26 N1  N 0 1 N N N 14.387 -40.127 -11.441 -4.490 5.807  -2.166 N26 B8I 19 
B8I N29 N2  N 0 1 Y N N 8.245  -37.822 -8.795  -2.010 -0.627 0.333  N29 B8I 20 
B8I C4  C19 C 0 1 Y N N 10.552 -37.801 -9.158  -3.235 1.375  0.280  C4  B8I 21 
B8I C5  C20 C 0 1 Y N N 6.088  -37.469 -7.070  -4.265 -3.438 0.018  C5  B8I 22 
B8I C6  C21 C 0 1 Y N N 10.719 -37.638 -7.794  -4.417 0.607  0.138  C6  B8I 23 
B8I C17 C22 C 0 1 N N N 2.008  -38.053 -13.961 6.809  -0.349 1.210  C17 B8I 24 
B8I C18 C23 C 0 1 N N N 2.984  -37.382 -16.159 6.355  -1.461 -1.011 C18 B8I 25 
B8I C23 C24 C 0 1 N N N 2.620  -36.751 -6.534  -6.214 -6.469 -0.274 C23 B8I 26 
B8I C25 C25 C 0 1 N N N 14.186 -37.867 -10.119 -4.670 4.857  0.256  C25 B8I 27 
B8I N27 N3  N 0 1 Y N N 4.163  -37.472 -8.301  -6.398 -3.922 -0.208 N27 B8I 28 
B8I N28 N4  N 0 1 Y N N 9.700  -37.576 -6.930  -4.325 -0.719 0.103  N28 B8I 29 
B8I N30 N5  N 0 1 Y N N 3.939  -37.107 -7.027  -5.664 -5.114 -0.175 N30 B8I 30 
B8I N31 N6  N 0 1 N N N 12.967 -37.826 -9.363  -4.565 3.396  0.217  N31 B8I 31 
B8I N32 N7  N 0 1 N N N 1.930  -38.050 -15.413 7.306  -0.815 -0.094 N32 B8I 32 
B8I N33 N8  N 0 1 N N N 4.337  -37.409 -14.126 4.592  -0.242 0.175  N33 B8I 33 
B8I N34 N9  N 0 1 N N N 7.385  -37.555 -6.652  -3.083 -2.688 0.159  N34 B8I 34 
B8I N35 N10 N 0 1 N N N 9.039  -38.078 -11.023 -0.824 1.400  0.524  N35 B8I 35 
B8I O36 O1  O 0 1 N N N 11.597 -38.162 -11.204 -2.351 3.520  0.440  O36 B8I 36 
B8I O37 O2  O 0 1 N N N 0.868  -38.922 -17.291 8.992  -1.043 -1.521 O37 B8I 37 
B8I O38 O3  O 0 1 N N N 0.365  -39.715 -15.229 9.455  -0.060 0.414  O38 B8I 38 
B8I H1  H1  H 0 1 N N N 6.033  -38.058 -9.199  -5.831 -1.874 -0.080 H1  B8I 39 
B8I H2  H2  H 0 1 N N N 5.127  -36.793 -5.218  -3.526 -5.487 0.022  H2  B8I 40 
B8I H3  H3  H 0 1 N N N 12.176 -37.308 -6.163  -6.613 0.762  -0.073 H3  B8I 41 
B8I H4  H4  H 0 1 N N N 14.085 -37.572 -7.598  -6.650 3.172  0.004  H4  B8I 42 
B8I H5  H5  H 0 1 N N N 5.548  -39.456 -12.776 3.518  1.402  2.011  H5  B8I 43 
B8I H6  H6  H 0 1 N N N 6.326  -39.330 -14.390 2.638  -0.145 2.020  H6  B8I 44 
B8I H7  H7  H 0 1 N N N 5.394  -35.649 -12.398 2.145  -1.314 -0.132 H7  B8I 45 
B8I H8  H8  H 0 1 N N N 5.096  -37.170 -11.491 2.673  -0.600 -1.674 H8  B8I 46 
B8I H9  H9  H 0 1 N N N 7.885  -39.914 -12.512 1.091  1.760  2.373  H9  B8I 47 
B8I H10 H10 H 0 1 N N N 8.336  -38.442 -13.438 1.619  2.474  0.831  H10 B8I 48 
B8I H11 H11 H 0 1 N N N 7.823  -36.155 -12.434 1.126  1.305  -1.321 H11 B8I 49 
B8I H12 H12 H 0 1 N N N 7.192  -36.072 -10.754 0.247  -0.242 -1.312 H12 B8I 50 
B8I H13 H13 H 0 1 N N N 3.680  -39.378 -13.731 5.119  0.775  1.936  H13 B8I 51 
B8I H14 H14 H 0 1 N N N 3.453  -38.212 -12.383 5.846  1.422  0.446  H14 B8I 52 
B8I H15 H15 H 0 1 N N N 4.664  -38.678 -15.774 5.415  0.370  -1.658 H15 B8I 53 
B8I H16 H16 H 0 1 N N N 5.094  -36.954 -16.038 4.365  -1.065 -1.745 H16 B8I 54 
B8I H17 H17 H 0 1 N N N 6.360  -36.931 -14.250 3.471  1.414  -0.468 H17 B8I 55 
B8I H18 H18 H 0 1 N N N 6.995  -38.550 -10.693 0.293  -0.254 1.167  H18 B8I 56 
B8I H19 H19 H 0 1 N N N -1.566 -40.250 -14.692 11.252 -0.905 -0.222 H19 B8I 57 
B8I H20 H20 H 0 1 N N N -1.337 -38.532 -15.164 10.864 0.679  -0.935 H20 B8I 58 
B8I H21 H21 H 0 1 N N N -1.330 -39.817 -16.419 11.413 0.574  0.755  H21 B8I 59 
B8I H22 H22 H 0 1 N N N 1.699  -37.066 -13.586 7.578  0.244  1.704  H22 B8I 60 
B8I H23 H23 H 0 1 N N N 1.327  -38.824 -13.570 6.550  -1.205 1.833  H23 B8I 61 
B8I H24 H24 H 0 1 N N N 2.792  -36.299 -16.148 6.051  -2.425 -0.604 H24 B8I 62 
B8I H25 H25 H 0 1 N N N 2.967  -37.747 -17.197 6.824  -1.602 -1.985 H25 B8I 63 
B8I H26 H26 H 0 1 N N N 1.888  -36.833 -7.351  -6.249 -6.771 -1.321 H26 B8I 64 
B8I H27 H27 H 0 1 N N N 2.337  -37.433 -5.719  -5.580 -7.159 0.282  H27 B8I 65 
B8I H28 H28 H 0 1 N N N 2.636  -35.717 -6.158  -7.221 -6.483 0.143  H28 B8I 66 
B8I H29 H29 H 0 1 N N N 15.039 -37.783 -9.429  -3.864 5.263  0.867  H29 B8I 67 
B8I H30 H30 H 0 1 N N N 14.200 -37.022 -10.824 -5.630 5.141  0.688  H30 B8I 68 
B8I H32 H32 H 0 1 N N N 7.555  -37.539 -5.667  -2.227 -3.139 0.227  H32 B8I 69 
B8I H33 H33 H 0 1 N N N 9.439  -38.951 -11.302 -0.836 2.369  0.559  H33 B8I 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B8I O37 C12 DOUB N N 1  
B8I C18 C20 SING N N 2  
B8I C18 N32 SING N N 3  
B8I C12 N32 SING N N 4  
B8I C12 O38 SING N N 5  
B8I C20 N33 SING N N 6  
B8I N32 C17 SING N N 7  
B8I C24 O38 SING N N 8  
B8I N33 C21 SING N N 9  
B8I N33 C19 SING N N 10 
B8I C17 C19 SING N N 11 
B8I C21 C13 SING N N 12 
B8I C21 C14 SING N N 13 
B8I C13 C15 SING N N 14 
B8I C15 C22 SING N N 15 
B8I C14 C16 SING N N 16 
B8I C16 C22 SING N N 17 
B8I C22 N35 SING N N 18 
B8I N26 C1  TRIP N N 19 
B8I O36 C11 DOUB N N 20 
B8I N35 C7  SING N N 21 
B8I C1  C25 SING N N 22 
B8I C25 N31 SING N N 23 
B8I C11 N31 SING N N 24 
B8I C11 C4  SING N N 25 
B8I C7  C4  DOUB Y N 26 
B8I C7  N29 SING Y N 27 
B8I N31 C10 SING N N 28 
B8I C4  C6  SING Y N 29 
B8I N29 C8  DOUB Y N 30 
B8I C2  N27 DOUB Y N 31 
B8I C2  C5  SING Y N 32 
B8I N27 N30 SING Y N 33 
B8I C10 C9  DOUB N N 34 
B8I C6  C9  SING N N 35 
B8I C6  N28 DOUB Y N 36 
B8I C8  N28 SING Y N 37 
B8I C8  N34 SING N N 38 
B8I C5  N34 SING N N 39 
B8I C5  C3  DOUB Y N 40 
B8I N30 C23 SING N N 41 
B8I N30 C3  SING Y N 42 
B8I C2  H1  SING N N 43 
B8I C3  H2  SING N N 44 
B8I C9  H3  SING N N 45 
B8I C10 H4  SING N N 46 
B8I C13 H5  SING N N 47 
B8I C13 H6  SING N N 48 
B8I C14 H7  SING N N 49 
B8I C14 H8  SING N N 50 
B8I C15 H9  SING N N 51 
B8I C15 H10 SING N N 52 
B8I C16 H11 SING N N 53 
B8I C16 H12 SING N N 54 
B8I C19 H13 SING N N 55 
B8I C19 H14 SING N N 56 
B8I C20 H15 SING N N 57 
B8I C20 H16 SING N N 58 
B8I C21 H17 SING N N 59 
B8I C22 H18 SING N N 60 
B8I C24 H19 SING N N 61 
B8I C24 H20 SING N N 62 
B8I C24 H21 SING N N 63 
B8I C17 H22 SING N N 64 
B8I C17 H23 SING N N 65 
B8I C18 H24 SING N N 66 
B8I C18 H25 SING N N 67 
B8I C23 H26 SING N N 68 
B8I C23 H27 SING N N 69 
B8I C23 H28 SING N N 70 
B8I C25 H29 SING N N 71 
B8I C25 H30 SING N N 72 
B8I N34 H32 SING N N 73 
B8I N35 H33 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B8I InChI            InChI                1.06  "InChI=1S/C25H32N10O3/c1-32-16-18(15-27-32)29-24-30-20-7-9-34(10-8-26)23(36)21(20)22(31-24)28-17-3-5-19(6-4-17)33-11-13-35(14-12-33)25(37)38-2/h7,9,15-17,19H,3-6,10-14H2,1-2H3,(H2,28,29,30,31)/t17-,19-" 
B8I InChIKey         InChI                1.06  HGLZLKIEOLRRSD-UAPYVXQJSA-N                                                                                                                                                                                
B8I SMILES_CANONICAL CACTVS               3.385 "COC(=O)N1CCN(CC1)[C@@H]2CC[C@H](CC2)Nc3nc(Nc4cnn(C)c4)nc5C=CN(CC#N)C(=O)c35"                                                                                                                              
B8I SMILES           CACTVS               3.385 "COC(=O)N1CCN(CC1)[CH]2CC[CH](CC2)Nc3nc(Nc4cnn(C)c4)nc5C=CN(CC#N)C(=O)c35"                                                                                                                                 
B8I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cc(cn1)Nc2nc3c(c(n2)NC4CCC(CC4)N5CCN(CC5)C(=O)OC)C(=O)N(C=C3)CC#N"                                                                                                                                     
B8I SMILES           "OpenEye OEToolkits" 2.0.7 "Cn1cc(cn1)Nc2nc3c(c(n2)NC4CCC(CC4)N5CCN(CC5)C(=O)OC)C(=O)N(C=C3)CC#N"                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           B8I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "methyl 4-[4-[[6-(cyanomethyl)-2-[(1-methylpyrazol-4-yl)amino]-5-oxidanylidene-pyrido[4,3-d]pyrimidin-4-yl]amino]cyclohexyl]piperazine-1-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B8I "Create component"  2021-12-07 PDBE 
B8I "Initial release"   2022-05-04 RCSB 
B8I "Modify descriptor" 2022-08-22 RCSB 
# 
