data_90I
# 
_chem_comp.id                                    90I 
_chem_comp.name                                  "benzyl (S)-2-(((S)-3,4-dioxo-1-((S)-2-oxopyrrolidin-3-yl)-4-(phenethylamino)butan-2-yl)carbamoyl)pyrrolidine-1-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H36 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(phenylmethyl) (2S)-2-[[(2S)-3,4-bis(oxidanylidene)-1-[(3S)-2-oxidanylidenepyrrolidin-3-yl]-4-(2-phenylethylamino)butan-2-yl]carbamoyl]pyrrolidine-1-carboxylate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-11-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        536.619 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     90I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7Q5E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
90I C5  C1  C 0 1 Y N N N N N 19.760 7.200 -36.679 -8.804 -2.424 -1.568 C5  90I 1  
90I C4  C2  C 0 1 Y N N N N N 19.081 6.091 -36.187 -8.719 -2.181 -0.209 C4  90I 2  
90I C3  C3  C 0 1 Y N N N N N 19.040 5.847 -34.816 -7.652 -1.464 0.299  C3  90I 3  
90I C2  C4  C 0 1 Y N N N N N 19.693 6.723 -33.955 -6.670 -0.989 -0.551 C2  90I 4  
90I C6  C5  C 0 1 Y N N N N N 20.411 8.071 -35.812 -7.823 -1.949 -2.418 C6  90I 5  
90I C1  C6  C 0 1 N N N N N N 19.656 6.472 -32.475 -5.508 -0.207 0.003  C1  90I 6  
90I C15 C7  C 0 1 N N S N N N 18.458 4.961 -26.138 0.851  4.282  -0.263 C15 90I 7  
90I C18 C8  C 0 1 N N N N N N 17.018 4.914 -25.689 0.704  3.847  -1.705 C18 90I 8  
90I C14 C9  C 0 1 N N N N N N 19.317 3.948 -25.414 0.252  3.234  0.677  C14 90I 9  
90I C28 C10 C 0 1 Y N N N N N 26.091 2.575 -23.798 5.255  -3.546 -1.187 C28 90I 10 
90I C27 C11 C 0 1 Y N N N N N 26.805 2.185 -24.931 6.068  -4.663 -1.170 C27 90I 11 
90I C26 C12 C 0 1 Y N N N N N 27.309 3.140 -25.814 7.443  -4.518 -1.198 C26 90I 12 
90I C25 C13 C 0 1 Y N N N N N 27.092 4.491 -25.576 8.004  -3.256 -1.244 C25 90I 13 
90I C24 C14 C 0 1 Y N N N N N 26.377 4.882 -24.448 7.190  -2.138 -1.262 C24 90I 14 
90I C23 C15 C 0 1 Y N N N N N 25.902 3.927 -23.555 5.816  -2.283 -1.233 C23 90I 15 
90I C22 C16 C 0 1 N N N N N N 25.112 4.372 -22.353 4.929  -1.065 -1.258 C22 90I 16 
90I N   N1  N 0 1 N N N N N N 21.776 4.073 -30.751 -2.272 -1.365 1.196  N   90I 17 
90I C   C17 C 0 1 N N N N N N 20.781 4.929 -30.953 -3.310 -0.575 0.858  C   90I 18 
90I O   O1  O 0 1 N N N N N N 19.790 5.005 -30.217 -3.234 0.628  1.014  O   90I 19 
90I C10 C18 C 0 1 N N N N N N 23.167 2.599 -29.585 -0.155 -2.169 2.069  C10 90I 20 
90I C11 C19 C 0 1 N N S N N N 21.776 3.256 -29.543 -1.036 -0.920 1.858  C11 90I 21 
90I C12 C20 C 0 1 N N N N N N 21.536 4.052 -28.299 -0.316 0.074  0.984  C12 90I 22 
90I C13 C21 C 0 1 N N S N N N 20.740 3.835 -25.992 1.153  1.998  0.702  C13 90I 23 
90I C16 C22 C 0 1 N N N N N N 18.857 6.418 -25.857 0.051  5.603  -0.182 C16 90I 24 
90I C17 C23 C 0 1 N N N N N N 17.573 7.179 -25.522 0.092  6.087  -1.648 C17 90I 25 
90I C19 C24 C 0 1 N N R N N N 21.487 2.694 -25.283 2.518  2.373  1.282  C19 90I 26 
90I C20 C25 C 0 1 N N N N N N 21.935 3.121 -23.933 3.405  1.155  1.307  C20 90I 27 
90I C21 C26 C 0 1 N N N N N N 23.662 3.932 -22.449 4.648  -0.609 0.176  C21 90I 28 
90I C7  C27 C 0 1 Y N N N N N 20.380 7.832 -34.444 -6.755 -1.233 -1.909 C7  90I 29 
90I C8  C28 C 0 1 N N N N N N 22.936 3.809 -31.620 -2.189 -2.819 0.970  C8  90I 30 
90I C9  C29 C 0 1 N N N N N N 23.517 2.511 -31.058 -1.186 -3.330 2.035  C9  90I 31 
90I N1  N2  N 0 1 N N N N N N 20.699 3.494 -27.420 0.536  0.961  1.534  N1  90I 32 
90I N2  N3  N 0 1 N N N N N N 16.574 6.135 -25.360 0.273  4.875  -2.456 N2  90I 33 
90I N3  N4  N 0 1 N N N N N N 23.168 3.638 -23.796 3.786  0.575  0.151  N3  90I 34 
90I O1  O2  O 0 1 N N N N N N 20.853 5.810 -32.097 -4.430 -1.118 0.345  O1  90I 35 
90I O2  O3  O 0 1 N N N N N N 16.349 3.891 -25.661 0.941  2.733  -2.122 O2  90I 36 
90I O3  O4  O 0 1 N N N N N N 21.191 3.002 -23.006 3.776  0.696  2.366  O3  90I 37 
90I O4  O5  O 0 1 N N N N N N 22.617 2.342 -26.089 2.350  2.867  2.612  O4  90I 38 
90I O5  O6  O 0 1 N N N N N N 22.052 5.128 -28.110 -0.503 0.075  -0.214 O5  90I 39 
90I H5  H1  H 0 1 N N N N N N 19.782 7.386 -37.743 -9.635 -2.988 -1.964 H5  90I 40 
90I H41 H2  H 0 1 N N N N N N 18.584 5.417 -36.869 -9.485 -2.552 0.455  H41 90I 41 
90I H31 H3  H 0 1 N N N N N N 18.509 4.990 -34.427 -7.585 -1.274 1.360  H31 90I 42 
90I H6  H4  H 0 1 N N N N N N 20.938 8.930 -36.201 -7.889 -2.138 -3.479 H6  90I 43 
90I H11 H5  H 0 1 N N N N N N 19.577 7.429 -31.939 -5.158 0.504  -0.745 H11 90I 44 
90I H12 H6  H 0 1 N N N N N N 18.790 5.841 -32.228 -5.825 0.332  0.896  H12 90I 45 
90I H18 H7  H 0 1 N N N N N N 18.510 4.776 -27.221 1.900  4.457  -0.023 H18 90I 46 
90I H16 H8  H 0 1 N N N N N N 19.391 4.244 -24.357 0.176  3.649  1.682  H16 90I 47 
90I H17 H9  H 0 1 N N N N N N 18.832 2.963 -25.485 -0.740 2.954  0.323  H17 90I 48 
90I H29 H10 H 0 1 N N N N N N 25.691 1.835 -23.120 4.181  -3.659 -1.169 H29 90I 49 
90I H28 H11 H 0 1 N N N N N N 26.969 1.135 -25.126 5.630  -5.650 -1.135 H28 90I 50 
90I H27 H12 H 0 1 N N N N N N 27.869 2.829 -26.684 8.078  -5.391 -1.185 H27 90I 51 
90I H26 H13 H 0 1 N N N N N N 27.475 5.233 -26.261 9.077  -3.142 -1.265 H26 90I 52 
90I H25 H14 H 0 1 N N N N N N 26.190 5.930 -24.265 7.628  -1.152 -1.297 H25 90I 53 
90I H24 H15 H 0 1 N N N N N N 25.560 3.934 -21.449 5.427  -0.264 -1.803 H24 90I 54 
90I H23 H16 H 0 1 N N N N N N 25.149 5.469 -22.286 3.989  -1.311 -1.752 H23 90I 55 
90I H10 H17 H 0 1 N N N N N N 23.134 1.596 -29.135 0.573  -2.268 1.264  H10 90I 56 
90I H13 H18 H 0 1 N N N N N N 23.903 3.217 -29.049 0.346  -2.128 3.037  H13 90I 57 
90I H14 H19 H 0 1 N N N N N N 21.011 2.470 -29.625 -1.274 -0.467 2.820  H14 90I 58 
90I H15 H20 H 0 1 N N N N N N 21.278 4.782 -25.836 1.280  1.620  -0.313 H15 90I 59 
90I H2A H21 H 0 1 N N N N N N 19.554 6.461 -25.007 -0.975 5.418  0.139  H2A 90I 60 
90I H19 H22 H 0 1 N N N N N N 19.335 6.857 -26.746 0.542  6.317  0.479  H19 90I 61 
90I H2C H23 H 0 1 N N N N N N 17.691 7.754 -24.592 -0.845 6.579  -1.910 H2C 90I 62 
90I H2B H24 H 0 1 N N N N N N 17.297 7.859 -26.341 0.931  6.768  -1.797 H2B 90I 63 
90I H21 H26 H 0 1 N N N N N N 23.038 4.735 -22.030 4.149  -1.411 0.721  H21 90I 64 
90I H22 H27 H 0 1 N N N N N N 23.546 3.022 -21.842 5.588  -0.364 0.669  H22 90I 65 
90I H7  H28 H 0 1 N N N N N N 20.885 8.502 -33.764 -5.988 -0.862 -2.573 H7  90I 66 
90I H82 H29 H 0 1 N N N N N N 23.669 4.627 -31.557 -3.166 -3.280 1.118  H82 90I 67 
90I H81 H30 H 0 1 N N N N N N 22.622 3.678 -32.666 -1.818 -3.030 -0.033 H81 90I 68 
90I H91 H31 H 0 1 N N N N N N 23.049 1.632 -31.525 -0.715 -4.259 1.714  H91 90I 69 
90I H92 H32 H 0 1 N N N N N N 24.606 2.468 -31.205 -1.673 -3.454 3.002  H92 90I 70 
90I H93 H33 H 0 1 N N N N N N 20.027 2.827 -27.743 0.741  0.914  2.481  H93 90I 71 
90I H94 H34 H 0 1 N N N N N N 15.645 6.311 -25.034 0.103  4.823  -3.409 H94 90I 72 
90I H32 H35 H 0 1 N N N N N N 23.737 3.818 -24.598 3.489  0.941  -0.696 H32 90I 73 
90I H1  H36 H 0 1 N Y N N N N 20.808 1.834 -25.187 2.976  3.144  0.663  H1  90I 74 
90I H42 H37 H 0 1 N N N N N N 23.097 1.637 -25.671 1.947  2.233  3.220  H42 90I 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
90I C5  C4  DOUB Y N 1  
90I C5  C6  SING Y N 2  
90I C4  C3  SING Y N 3  
90I C6  C7  DOUB Y N 4  
90I C3  C2  DOUB Y N 5  
90I C7  C2  SING Y N 6  
90I C2  C1  SING N N 7  
90I C1  O1  SING N N 8  
90I O1  C   SING N N 9  
90I C8  C9  SING N N 10 
90I C8  N   SING N N 11 
90I C9  C10 SING N N 12 
90I C   N   SING N N 13 
90I C   O   DOUB N N 14 
90I N   C11 SING N N 15 
90I C10 C11 SING N N 16 
90I C11 C12 SING N N 17 
90I C12 O5  DOUB N N 18 
90I C12 N1  SING N N 19 
90I N1  C13 SING N N 20 
90I C15 C16 SING N N 21 
90I C15 C18 SING N N 22 
90I C15 C14 SING N N 23 
90I O4  C19 SING N N 24 
90I C13 C14 SING N N 25 
90I C13 C19 SING N N 26 
90I C16 C17 SING N N 27 
90I C26 C25 DOUB Y N 28 
90I C26 C27 SING Y N 29 
90I C18 O2  DOUB N N 30 
90I C18 N2  SING N N 31 
90I C25 C24 SING Y N 32 
90I C17 N2  SING N N 33 
90I C19 C20 SING N N 34 
90I C27 C28 DOUB Y N 35 
90I C24 C23 DOUB Y N 36 
90I C20 N3  SING N N 37 
90I C20 O3  DOUB N N 38 
90I C28 C23 SING Y N 39 
90I N3  C21 SING N N 40 
90I C23 C22 SING N N 41 
90I C21 C22 SING N N 42 
90I C5  H5  SING N N 43 
90I C4  H41 SING N N 44 
90I C3  H31 SING N N 45 
90I C6  H6  SING N N 46 
90I C1  H11 SING N N 47 
90I C1  H12 SING N N 48 
90I C15 H18 SING N N 49 
90I C14 H16 SING N N 50 
90I C14 H17 SING N N 51 
90I C28 H29 SING N N 52 
90I C27 H28 SING N N 53 
90I C26 H27 SING N N 54 
90I C25 H26 SING N N 55 
90I C24 H25 SING N N 56 
90I C22 H24 SING N N 57 
90I C22 H23 SING N N 58 
90I C10 H10 SING N N 59 
90I C10 H13 SING N N 60 
90I C11 H14 SING N N 61 
90I C13 H15 SING N N 62 
90I C16 H2A SING N N 63 
90I C16 H19 SING N N 64 
90I C17 H2C SING N N 65 
90I C17 H2B SING N N 66 
90I C21 H21 SING N N 67 
90I C21 H22 SING N N 68 
90I C7  H7  SING N N 69 
90I C8  H82 SING N N 70 
90I C8  H81 SING N N 71 
90I C9  H91 SING N N 72 
90I C9  H92 SING N N 73 
90I N1  H93 SING N N 74 
90I N2  H94 SING N N 75 
90I N3  H32 SING N N 76 
90I C19 H1  SING N N 77 
90I O4  H42 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
90I InChI            InChI                1.06    "InChI=1S/C29H36N4O6/c34-25(28(37)31-15-13-20-8-3-1-4-9-20)23(18-22-14-16-30-26(22)35)32-27(36)24-12-7-17-33(24)29(38)39-19-21-10-5-2-6-11-21/h1-6,8-11,22-25,34H,7,12-19H2,(H,30,35)(H,31,37)(H,32,36)/t22-,23-,24-,25+/m0/s1" 
90I InChIKey         InChI                1.06    AJCTZJFZKXWMHB-OJJQZRKESA-N                                                                                                                                                                                                     
90I SMILES_CANONICAL CACTVS               3.385   "O[C@H]([C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2CCCN2C(=O)OCc3ccccc3)C(=O)NCCc4ccccc4"                                                                                                                                               
90I SMILES           CACTVS               3.385   "O[CH]([CH](C[CH]1CCNC1=O)NC(=O)[CH]2CCCN2C(=O)OCc3ccccc3)C(=O)NCCc4ccccc4"                                                                                                                                                     
90I SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CCNC(=O)[C@@H]([C@H](C[C@@H]2CCNC2=O)NC(=O)[C@@H]3CCCN3C(=O)OCc4ccccc4)O"                                                                                                                                            
90I SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CCNC(=O)C(C(CC2CCNC2=O)NC(=O)C3CCCN3C(=O)OCc4ccccc4)O"                                                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           90I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(phenylmethyl) (2~{S})-2-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-(2-phenylethylamino)butan-2-yl]carbamoyl]pyrrolidine-1-carboxylate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      90I 
_pdbx_chem_comp_synonyms.name         "(phenylmethyl) (2S)-2-[[(2S)-3,4-bis(oxidanylidene)-1-[(3S)-2-oxidanylidenepyrrolidin-3-yl]-4-(2-phenylethylamino)butan-2-yl]carbamoyl]pyrrolidine-1-carboxylate" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
90I "Create component"   2021-11-10 PDBE 
90I "Modify descriptor"  2022-08-22 RCSB 
90I "Modify coordinates" 2022-11-15 PDBE 
90I "Initial release"    2022-11-23 RCSB 
90I "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            90I 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
