data_8ZI
# 
_chem_comp.id                                    8ZI 
_chem_comp.name                                  "(1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(3,3-dimethylbutanoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H47 N5 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-10-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        549.703 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8ZI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7SF1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8ZI N1  N1  N 0 1 N N N N N N 10.816 -25.290 22.717 -0.352 -0.702 0.326  N1  8ZI 1  
8ZI N3  N2  N 0 1 N N N N N N 9.083  -27.485 20.641 3.269  0.004  0.147  N3  8ZI 2  
8ZI C4  C1  C 0 1 N N S N N N 11.956 -26.733 24.180 0.229  -2.958 0.879  C4  8ZI 3  
8ZI C5  C2  C 0 1 N N N N N N 13.088 -27.123 23.252 0.002  -2.606 2.351  C5  8ZI 4  
8ZI C6  C3  C 0 1 N N N N N N 13.815 -26.068 22.441 -1.165 -1.675 2.682  C6  8ZI 5  
8ZI C7  C4  C 0 1 N N N N N N 14.001 -28.257 23.682 0.293  -3.693 3.388  C7  8ZI 6  
8ZI C8  C5  C 0 1 N N N N N N 11.286 -25.375 24.109 -0.461 -2.085 -0.192 C8  8ZI 7  
8ZI C10 C6  C 0 1 N N S N N N 10.133 -22.931 22.962 -2.576 0.045  -0.456 C10 8ZI 8  
8ZI C13 C7  C 0 1 N N N N N N 7.763  -23.553 23.526 -1.344 -0.539 -2.549 C13 8ZI 9  
8ZI C15 C8  C 0 1 N N N N N N 12.174 -21.583 23.032 -4.913 0.547  0.018  C15 8ZI 10 
8ZI C17 C9  C 0 1 N N N N N N 12.694 -19.046 22.805 -7.356 0.801  0.358  C17 8ZI 11 
8ZI C20 C10 C 0 1 N N N N N N 13.776 -18.132 22.228 -8.443 1.695  0.960  C20 8ZI 12 
8ZI C21 C11 C 0 1 N N S N N N 7.750  -28.042 20.365 4.273  0.187  -0.904 C21 8ZI 13 
8ZI C22 C12 C 0 1 N N R N N N 7.939  -29.576 20.151 4.988  -1.141 -1.163 C22 8ZI 14 
8ZI C24 C13 C 0 1 N N N N N N 7.072  -27.270 19.226 5.292  1.237  -0.459 C24 8ZI 15 
8ZI C26 C14 C 0 1 N N N N N N 5.582  -25.504 20.457 5.616  3.681  0.099  C26 8ZI 16 
8ZI C28 C15 C 0 1 N N N N N N 6.422  -25.021 18.271 3.599  2.565  0.813  C28 8ZI 17 
8ZI O1  O1  O 0 1 N N N N N N 8.667  -26.975 22.793 1.763  -0.705 -1.320 O1  8ZI 18 
8ZI C1  C16 C 0 1 N N N N N N 9.447  -27.069 21.853 2.039  -0.449 -0.167 C1  8ZI 19 
8ZI C2  C17 C 0 1 N N S N N N 10.872 -26.566 21.999 1.006  -0.637 0.914  C2  8ZI 20 
8ZI C3  C18 C 0 1 N N R N N N 11.664 -27.487 22.897 1.196  -2.002 1.609  C3  8ZI 21 
8ZI C9  C19 C 0 1 N N N N N N 10.292 -24.200 22.116 -1.276 0.278  0.269  C9  8ZI 22 
8ZI C11 C20 C 0 1 N N N N N N 8.684  -22.410 23.086 -2.401 0.383  -1.938 C11 8ZI 23 
8ZI C12 C21 C 0 1 N N N N N N 8.142  -21.849 21.771 -3.731 0.188  -2.667 C12 8ZI 24 
8ZI C14 C22 C 0 1 N N N N N N 8.647  -21.291 24.138 -1.951 1.839  -2.079 C14 8ZI 25 
8ZI N2  N3  N 0 1 N N N N N N 11.034 -21.919 22.424 -3.617 0.901  0.120  N2  8ZI 26 
8ZI C16 C23 C 0 1 N N N N N N 13.004 -20.499 22.369 -5.983 1.428  0.611  C16 8ZI 27 
8ZI C18 C24 C 0 1 N N N N N N 12.717 -18.934 24.336 -7.414 -0.581 1.011  C18 8ZI 28 
8ZI C19 C25 C 0 1 N N N N N N 11.327 -18.566 22.294 -7.585 0.664  -1.148 C19 8ZI 29 
8ZI O2  O2  O 0 1 N N N N N N 12.526 -22.122 24.078 -5.219 -0.480 -0.550 O2  8ZI 30 
8ZI O3  O3  O 0 1 N N N N N N 9.944  -24.217 20.925 -1.062 1.345  0.803  O3  8ZI 31 
8ZI C23 C26 C 0 1 N N N N N N 6.590  -30.278 20.099 3.984  -2.175 -1.602 C23 8ZI 32 
8ZI N4  N4  N 0 1 N N N N N N 6.235  -31.258 21.146 3.327  -2.024 -2.769 N4  8ZI 33 
8ZI O4  O4  O 0 1 N N N N N N 5.823  -30.020 19.220 3.766  -3.143 -0.904 O4  8ZI 34 
8ZI O5  O5  O 0 1 N N N N N N 8.703  -30.137 21.227 5.629  -1.578 0.037  O5  8ZI 35 
8ZI C25 C27 C 0 1 N N S N N N 6.756  -25.804 19.534 4.600  2.594  -0.321 C25 8ZI 36 
8ZI C27 C28 C 0 1 N N N N N N 4.993  -24.177 19.921 5.463  3.679  1.636  C27 8ZI 37 
8ZI N5  N5  N 0 1 N N N N N N 5.429  -24.159 18.528 4.106  3.184  1.894  N5  8ZI 38 
8ZI O6  O6  O 0 1 N N N N N N 6.995  -25.153 17.181 2.499  2.057  0.756  O6  8ZI 39 
8ZI H1  H1  H 0 1 N N N N N N 9.741  -27.416 19.891 3.489  0.209  1.069  H1  8ZI 40 
8ZI H2  H2  H 0 1 N N N N N N 11.863 -27.291 25.123 0.519  -3.973 0.608  H2  8ZI 41 
8ZI H3  H3  H 0 1 N N N N N N 14.832 -25.935 22.839 -0.812 -0.859 3.312  H3  8ZI 42 
8ZI H4  H4  H 0 1 N N N N N N 13.872 -26.388 21.390 -1.579 -1.268 1.759  H4  8ZI 43 
8ZI H5  H5  H 0 1 N N N N N N 13.269 -25.115 22.505 -1.938 -2.234 3.211  H5  8ZI 44 
8ZI H6  H6  H 0 1 N N N N N N 13.425 -28.991 24.265 0.777  -4.539 2.902  H6  8ZI 45 
8ZI H7  H7  H 0 1 N N N N N N 14.423 -28.746 22.791 0.951  -3.292 4.159  H7  8ZI 46 
8ZI H8  H8  H 0 1 N N N N N N 14.817 -27.856 24.301 -0.642 -4.021 3.843  H8  8ZI 47 
8ZI H9  H9  H 0 1 N N N N N N 12.004 -24.571 24.330 -1.508 -2.370 -0.298 H9  8ZI 48 
8ZI H10 H10 H 0 1 N N N N N N 10.442 -25.317 24.812 0.057  -2.176 -1.147 H10 8ZI 49 
8ZI H11 H11 H 0 1 N N N N N N 10.471 -23.178 23.979 -2.868 -1.000 -0.354 H11 8ZI 50 
8ZI H12 H12 H 0 1 N N N N N N 8.130  -23.977 24.472 -1.681 -1.573 -2.483 H12 8ZI 51 
8ZI H13 H13 H 0 1 N N N N N N 6.743  -23.167 23.668 -1.191 -0.273 -3.596 H13 8ZI 52 
8ZI H14 H14 H 0 1 N N N N N N 7.755  -24.335 22.753 -0.406 -0.427 -2.006 H14 8ZI 53 
8ZI H15 H15 H 0 1 N N N N N N 14.763 -18.462 22.584 -8.280 1.793  2.033  H15 8ZI 54 
8ZI H16 H16 H 0 1 N N N N N N 13.748 -18.179 21.129 -8.401 2.680  0.495  H16 8ZI 55 
8ZI H17 H17 H 0 1 N N N N N N 13.595 -17.098 22.555 -9.421 1.249  0.780  H17 8ZI 56 
8ZI H18 H18 H 0 1 N N N N N N 7.130  -27.914 21.265 3.784  0.521  -1.820 H18 8ZI 57 
8ZI H19 H19 H 0 1 N N N N N N 8.460  -29.732 19.195 5.735  -1.005 -1.945 H19 8ZI 58 
8ZI H20 H20 H 0 1 N N N N N N 6.127  -27.779 18.984 5.717  0.947  0.502  H20 8ZI 59 
8ZI H21 H21 H 0 1 N N N N N N 7.738  -27.299 18.351 6.088  1.309  -1.201 H21 8ZI 60 
8ZI H22 H22 H 0 1 N N N N N N 4.834  -26.309 20.408 6.629  3.401  -0.192 H22 8ZI 61 
8ZI H23 H23 H 0 1 N N N N N N 5.925  -25.385 21.495 5.346  4.650  -0.319 H23 8ZI 62 
8ZI H24 H24 H 0 1 N N N N N N 11.355 -26.460 21.016 1.067  0.173  1.641  H24 8ZI 63 
8ZI H25 H25 H 0 1 N N N N N N 11.359 -28.541 22.968 2.208  -2.286 1.898  H25 8ZI 64 
8ZI H26 H26 H 0 1 N N N N N N 7.111  -21.495 21.920 -4.484 0.844  -2.231 H26 8ZI 65 
8ZI H27 H27 H 0 1 N N N N N N 8.774  -21.011 21.442 -3.606 0.428  -3.723 H27 8ZI 66 
8ZI H28 H28 H 0 1 N N N N N N 8.151  -22.638 21.004 -4.052 -0.850 -2.566 H28 8ZI 67 
8ZI H29 H29 H 0 1 N N N N N N 9.033  -21.673 25.094 -1.003 1.978  -1.560 H29 8ZI 68 
8ZI H30 H30 H 0 1 N N N N N N 9.271  -20.450 23.801 -1.826 2.079  -3.135 H30 8ZI 69 
8ZI H31 H31 H 0 1 N N N N N N 7.610  -20.948 24.272 -2.704 2.496  -1.644 H31 8ZI 70 
8ZI H32 H32 H 0 1 N N N N N N 10.790 -21.460 21.570 -3.372 1.723  0.574  H32 8ZI 71 
8ZI H33 H33 H 0 1 N N N N N N 12.841 -20.567 21.283 -5.820 1.525  1.684  H33 8ZI 72 
8ZI H34 H34 H 0 1 N N N N N N 14.062 -20.700 22.594 -5.942 2.412  0.146  H34 8ZI 73 
8ZI H35 H35 H 0 1 N N N N N N 11.942 -19.587 24.764 -8.392 -1.027 0.831  H35 8ZI 74 
8ZI H36 H36 H 0 1 N N N N N N 13.704 -19.242 24.711 -6.640 -1.218 0.582  H36 8ZI 75 
8ZI H37 H37 H 0 1 N N N N N N 12.521 -17.892 24.630 -7.251 -0.483 2.084  H37 8ZI 76 
8ZI H38 H38 H 0 1 N N N N N N 10.535 -19.213 22.700 -8.563 0.218  -1.328 H38 8ZI 77 
8ZI H39 H39 H 0 1 N N N N N N 11.157 -17.530 22.621 -7.544 1.649  -1.613 H39 8ZI 78 
8ZI H40 H40 H 0 1 N N N N N N 11.310 -18.611 21.195 -6.811 0.027  -1.577 H40 8ZI 79 
8ZI H41 H41 H 0 1 N N N N N N 5.345  -31.713 21.124 3.501  -1.250 -3.327 H41 8ZI 80 
8ZI H42 H42 H 0 1 N N N N N N 6.885  -31.466 21.877 2.681  -2.690 -3.051 H42 8ZI 81 
8ZI H43 H43 H 0 1 N N N N N N 9.549  -29.708 21.272 5.023  -1.720 0.777  H43 8ZI 82 
8ZI H44 H44 H 0 1 N N N N N N 7.656  -25.355 19.979 4.112  2.869  -1.256 H44 8ZI 83 
8ZI H45 H45 H 0 1 N N N N N N 5.397  -23.315 20.472 6.200  3.015  2.088  H45 8ZI 84 
8ZI H46 H46 H 0 1 N N N N N N 3.895  -24.176 19.991 5.578  4.690  2.028  H46 8ZI 85 
8ZI H47 H47 H 0 1 N N N N N N 5.026  -23.562 17.834 3.636  3.289  2.736  H47 8ZI 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8ZI O6  C28 DOUB N N 1  
8ZI C28 N5  SING N N 2  
8ZI C28 C25 SING N N 3  
8ZI N5  C27 SING N N 4  
8ZI O4  C23 DOUB N N 5  
8ZI C24 C25 SING N N 6  
8ZI C24 C21 SING N N 7  
8ZI C25 C26 SING N N 8  
8ZI C27 C26 SING N N 9  
8ZI C23 C22 SING N N 10 
8ZI C23 N4  SING N N 11 
8ZI C22 C21 SING N N 12 
8ZI C22 O5  SING N N 13 
8ZI C21 N3  SING N N 14 
8ZI N3  C1  SING N N 15 
8ZI O3  C9  DOUB N N 16 
8ZI C12 C11 SING N N 17 
8ZI C1  C2  SING N N 18 
8ZI C1  O1  DOUB N N 19 
8ZI C2  N1  SING N N 20 
8ZI C2  C3  SING N N 21 
8ZI C9  N1  SING N N 22 
8ZI C9  C10 SING N N 23 
8ZI C20 C17 SING N N 24 
8ZI C19 C17 SING N N 25 
8ZI C16 C17 SING N N 26 
8ZI C16 C15 SING N N 27 
8ZI N2  C10 SING N N 28 
8ZI N2  C15 SING N N 29 
8ZI C6  C5  SING N N 30 
8ZI N1  C8  SING N N 31 
8ZI C17 C18 SING N N 32 
8ZI C3  C5  SING N N 33 
8ZI C3  C4  SING N N 34 
8ZI C10 C11 SING N N 35 
8ZI C15 O2  DOUB N N 36 
8ZI C11 C13 SING N N 37 
8ZI C11 C14 SING N N 38 
8ZI C5  C7  SING N N 39 
8ZI C5  C4  SING N N 40 
8ZI C8  C4  SING N N 41 
8ZI N3  H1  SING N N 42 
8ZI C4  H2  SING N N 43 
8ZI C6  H3  SING N N 44 
8ZI C6  H4  SING N N 45 
8ZI C6  H5  SING N N 46 
8ZI C7  H6  SING N N 47 
8ZI C7  H7  SING N N 48 
8ZI C7  H8  SING N N 49 
8ZI C8  H9  SING N N 50 
8ZI C8  H10 SING N N 51 
8ZI C10 H11 SING N N 52 
8ZI C13 H12 SING N N 53 
8ZI C13 H13 SING N N 54 
8ZI C13 H14 SING N N 55 
8ZI C20 H15 SING N N 56 
8ZI C20 H16 SING N N 57 
8ZI C20 H17 SING N N 58 
8ZI C21 H18 SING N N 59 
8ZI C22 H19 SING N N 60 
8ZI C24 H20 SING N N 61 
8ZI C24 H21 SING N N 62 
8ZI C26 H22 SING N N 63 
8ZI C26 H23 SING N N 64 
8ZI C2  H24 SING N N 65 
8ZI C3  H25 SING N N 66 
8ZI C12 H26 SING N N 67 
8ZI C12 H27 SING N N 68 
8ZI C12 H28 SING N N 69 
8ZI C14 H29 SING N N 70 
8ZI C14 H30 SING N N 71 
8ZI C14 H31 SING N N 72 
8ZI N2  H32 SING N N 73 
8ZI C16 H33 SING N N 74 
8ZI C16 H34 SING N N 75 
8ZI C18 H35 SING N N 76 
8ZI C18 H36 SING N N 77 
8ZI C18 H37 SING N N 78 
8ZI C19 H38 SING N N 79 
8ZI C19 H39 SING N N 80 
8ZI C19 H40 SING N N 81 
8ZI N4  H41 SING N N 82 
8ZI N4  H42 SING N N 83 
8ZI O5  H43 SING N N 84 
8ZI C25 H44 SING N N 85 
8ZI C27 H45 SING N N 86 
8ZI C27 H46 SING N N 87 
8ZI N5  H47 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8ZI SMILES           ACDLabs              12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)C(O)C(N)=O)N(CC21)C(=O)C(NC(=O)CC(C)(C)C)C(C)(C)C"                                                                                                                                                                   
8ZI InChI            InChI                1.03  "InChI=1S/C28H47N5O6/c1-26(2,3)12-17(34)32-21(27(4,5)6)25(39)33-13-15-18(28(15,7)8)19(33)24(38)31-16(20(35)22(29)36)11-14-9-10-30-23(14)37/h14-16,18-21,35H,9-13H2,1-8H3,(H2,29,36)(H,30,37)(H,31,38)(H,32,34)/t14-,15-,16-,18-,19-,20+,21+/m0/s1" 
8ZI InChIKey         InChI                1.03  AQCHRJCCMXXILC-CMBJTQIYSA-N                                                                                                                                                                                                                        
8ZI SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)CC(=O)N[C@H](C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)C(N)=O)C2(C)C)C(C)(C)C"                                                                                                                                     
8ZI SMILES           CACTVS               3.385 "CC(C)(C)CC(=O)N[CH](C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(N)=O)C2(C)C)C(C)(C)C"                                                                                                                                                
8ZI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)CC(C)(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](C(=O)N)O)C"                                                                                                                                    
8ZI SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)CC(C)(C)C)C(=O)NC(CC3CCNC3=O)C(C(=O)N)O)C"                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8ZI "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(3,3-dimethylbutanoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide"                                                              
8ZI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(2~{S},3~{R})-4-azanyl-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]-3-[(2~{S})-2-(3,3-dimethylbutanoylamino)-3,3-dimethyl-butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8ZI "Create component" 2021-10-04 RCSB 
8ZI "Initial release"  2022-10-05 RCSB 
8ZI "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            8ZI 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C22 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
