data_8VI
# 
_chem_comp.id                                    8VI 
_chem_comp.name                                  "N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-N-ethyl-2-methoxy-benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H31 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-05-16 
_chem_comp.pdbx_modified_date                    2016-07-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        437.535 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8VI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5G4S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8VI C01  C01  C 0 1 N N N 32.275 27.683 38.036 -1.577 1.368  -2.651 C01  8VI 1  
8VI C05  C05  C 0 1 N N N 31.185 26.655 38.166 -1.353 0.036  -1.932 C05  8VI 2  
8VI N08  N08  N 0 1 N N N 30.928 25.983 36.895 -0.856 0.289  -0.577 N08  8VI 3  
8VI C09  C09  C 0 1 N N N 31.583 24.825 36.619 -1.724 0.552  0.420  C09  8VI 4  
8VI O10  O10  O 0 1 N N N 31.418 24.232 35.569 -1.309 0.869  1.518  O10  8VI 5  
8VI C11  C11  C 0 1 Y N N 32.515 24.291 37.668 -3.176 0.458  0.179  C11  8VI 6  
8VI C12  C12  C 0 1 Y N N 33.840 24.727 37.686 -3.725 -0.713 -0.350 C12  8VI 7  
8VI C14  C14  C 0 1 Y N N 34.722 24.246 38.639 -5.083 -0.795 -0.572 C14  8VI 8  
8VI C16  C16  C 0 1 Y N N 34.299 23.332 39.579 -5.906 0.278  -0.275 C16  8VI 9  
8VI C18  C18  C 0 1 Y N N 32.990 22.885 39.580 -5.376 1.441  0.248  C18  8VI 10 
8VI C20  C20  C 0 1 Y N N 32.102 23.366 38.632 -4.013 1.539  0.484  C20  8VI 11 
8VI O21  O21  O 0 1 N N N 30.795 22.973 38.559 -3.492 2.679  1.003  O21  8VI 12 
8VI C22  C22  C 0 1 N N N 30.476 21.661 39.014 -4.406 3.739  1.290  C22  8VI 13 
8VI C26  C26  C 0 1 Y N N 30.040 26.608 35.965 0.521  0.256  -0.318 C26  8VI 14 
8VI C27  C27  C 0 1 Y N N 30.570 27.196 34.816 1.275  1.413  -0.437 C27  8VI 15 
8VI C29  C29  C 0 1 Y N N 29.716 27.799 33.916 2.637  1.379  -0.180 C29  8VI 16 
8VI N30  N30  N 0 1 N N N 29.949 28.455 32.708 3.639  2.349  -0.212 N30  8VI 17 
8VI C31  C31  C 0 1 N N N 31.251 28.677 32.081 3.455  3.761  -0.557 C31  8VI 18 
8VI C35  C35  C 0 1 N N N 28.751 28.874 32.172 4.804  1.767  0.130  C35  8VI 19 
8VI O36  O36  O 0 1 N N N 28.594 29.477 31.128 5.878  2.336  0.201  O36  8VI 20 
8VI N37  N37  N 0 1 N N N 27.767 28.486 33.058 4.602  0.461  0.382  N37  8VI 21 
8VI C38  C38  C 0 1 N N N 26.341 28.737 32.864 5.629  -0.504 0.783  C38  8VI 22 
8VI C42  C42  C 0 1 Y N N 28.345 27.815 34.135 3.248  0.181  0.197  C42  8VI 23 
8VI C43  C43  C 0 1 Y N N 27.800 27.229 35.259 2.493  -0.976 0.315  C43  8VI 24 
8VI C45  C45  C 0 1 Y N N 28.648 26.627 36.190 1.131  -0.940 0.064  C45  8VI 25 
8VI N46  N46  N 0 1 N N N 28.141 26.007 37.341 0.365  -2.107 0.188  N46  8VI 26 
8VI C47  C47  C 0 1 N N N 28.009 24.550 37.268 0.354  -2.584 1.578  C47  8VI 27 
8VI C50  C50  C 0 1 N N N 27.679 23.958 38.614 -0.554 -3.811 1.686  C50  8VI 28 
8VI N53  N53  N 0 1 N N N 26.459 24.573 39.143 -0.069 -4.858 0.776  N53  8VI 29 
8VI C55  C55  C 0 1 N N N 26.634 26.018 39.289 -0.059 -4.381 -0.614 C55  8VI 30 
8VI C58  C58  C 0 1 N N R 26.999 26.682 37.984 0.850  -3.154 -0.722 C58  8VI 31 
8VI C60  C60  C 0 1 N N N 27.224 28.170 38.191 0.831  -2.630 -2.159 C60  8VI 32 
8VI H011 H011 H 0 0 N N N 32.441 28.167 39.010 -1.946 1.180  -3.659 H011 8VI 33 
8VI H012 H012 H 0 0 N N N 33.203 27.193 37.707 -2.308 1.959  -2.100 H012 8VI 34 
8VI H013 H013 H 0 0 N N N 31.978 28.440 37.296 -0.635 1.914  -2.705 H013 8VI 35 
8VI H051 H051 H 0 0 N N N 31.488 25.905 38.912 -2.295 -0.510 -1.878 H051 8VI 36 
8VI H052 H052 H 0 0 N N N 30.263 27.153 38.500 -0.622 -0.556 -2.483 H052 8VI 37 
8VI H12  H12  H 0 1 N N N 34.180 25.443 36.953 -3.087 -1.553 -0.584 H12  8VI 38 
8VI H14  H14  H 0 1 N N N 35.746 24.589 38.645 -5.506 -1.701 -0.981 H14  8VI 39 
8VI H16  H16  H 0 1 N N N 34.993 22.962 40.319 -6.969 0.205  -0.454 H16  8VI 40 
8VI H18  H18  H 0 1 N N N 32.662 22.165 40.316 -6.025 2.274  0.477  H18  8VI 41 
8VI H221 H221 H 0 0 N N N 29.397 21.484 38.896 -3.861 4.589  1.699  H221 8VI 42 
8VI H222 H222 H 0 0 N N N 31.035 20.922 38.422 -4.912 4.040  0.372  H222 8VI 43 
8VI H223 H223 H 0 0 N N N 30.750 21.564 40.075 -5.144 3.397  2.016  H223 8VI 44 
8VI H27  H27  H 0 1 N N N 31.634 27.179 34.634 0.803  2.339  -0.728 H27  8VI 45 
8VI H311 H311 H 0 0 N N N 31.115 29.222 31.135 3.229  4.330  0.345  H311 8VI 46 
8VI H312 H312 H 0 0 N N N 31.887 29.268 32.757 4.369  4.147  -1.010 H312 8VI 47 
8VI H313 H313 H 0 0 N N N 31.731 27.708 31.879 2.631  3.858  -1.264 H313 8VI 48 
8VI H381 H381 H 0 0 N N N 25.777 28.326 33.714 6.594  -0.002 0.848  H381 8VI 49 
8VI H382 H382 H 0 0 N N N 26.165 29.821 32.797 5.372  -0.925 1.756  H382 8VI 50 
8VI H383 H383 H 0 0 N N N 26.007 28.253 31.934 5.684  -1.304 0.045  H383 8VI 51 
8VI H43  H43  H 0 1 N N N 26.732 27.236 35.416 2.965  -1.903 0.606  H43  8VI 52 
8VI H471 H471 H 0 0 N N N 27.205 24.299 36.560 1.367  -2.854 1.877  H471 8VI 53 
8VI H472 H472 H 0 0 N N N 28.958 24.122 36.912 -0.020 -1.796 2.230  H472 8VI 54 
8VI H58  H58  H 0 1 N N N 26.133 26.578 37.314 1.868  -3.431 -0.448 H58  8VI 55 
8VI H501 H501 H 0 0 N N N 27.525 22.874 38.508 -0.541 -4.184 2.710  H501 8VI 56 
8VI H502 H502 H 0 0 N N N 28.512 24.144 39.308 -1.572 -3.534 1.413  H502 8VI 57 
8VI H53  H53  H 0 1 N N N 25.702 24.395 38.514 0.845  -5.184 1.054  H53  8VI 58 
8VI H551 H551 H 0 0 N N N 25.693 26.453 39.657 0.316  -5.170 -1.266 H551 8VI 59 
8VI H552 H552 H 0 0 N N N 27.435 26.206 40.019 -1.071 -4.111 -0.913 H552 8VI 60 
8VI H601 H601 H 0 0 N N N 26.339 28.612 38.673 1.477  -1.755 -2.236 H601 8VI 61 
8VI H602 H602 H 0 0 N N N 28.105 28.322 38.833 1.191  -3.407 -2.834 H602 8VI 62 
8VI H603 H603 H 0 0 N N N 27.392 28.654 37.218 -0.187 -2.355 -2.432 H603 8VI 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8VI C01 C05  SING N N 1  
8VI C05 N08  SING N N 2  
8VI N08 C09  SING N N 3  
8VI N08 C26  SING N N 4  
8VI C09 O10  DOUB N N 5  
8VI C09 C11  SING N N 6  
8VI C11 C12  SING Y N 7  
8VI C11 C20  DOUB Y N 8  
8VI C12 C14  DOUB Y N 9  
8VI C14 C16  SING Y N 10 
8VI C16 C18  DOUB Y N 11 
8VI C18 C20  SING Y N 12 
8VI C20 O21  SING N N 13 
8VI O21 C22  SING N N 14 
8VI C26 C27  SING Y N 15 
8VI C26 C45  DOUB Y N 16 
8VI C27 C29  DOUB Y N 17 
8VI C29 N30  SING N N 18 
8VI C29 C42  SING Y N 19 
8VI N30 C31  SING N N 20 
8VI N30 C35  SING N N 21 
8VI C35 O36  DOUB N N 22 
8VI C35 N37  SING N N 23 
8VI N37 C38  SING N N 24 
8VI N37 C42  SING N N 25 
8VI C42 C43  DOUB Y N 26 
8VI C43 C45  SING Y N 27 
8VI C45 N46  SING N N 28 
8VI N46 C47  SING N N 29 
8VI N46 C58  SING N N 30 
8VI C47 C50  SING N N 31 
8VI C50 N53  SING N N 32 
8VI N53 C55  SING N N 33 
8VI C55 C58  SING N N 34 
8VI C58 C60  SING N N 35 
8VI C01 H011 SING N N 36 
8VI C01 H012 SING N N 37 
8VI C01 H013 SING N N 38 
8VI C05 H051 SING N N 39 
8VI C05 H052 SING N N 40 
8VI C12 H12  SING N N 41 
8VI C14 H14  SING N N 42 
8VI C16 H16  SING N N 43 
8VI C18 H18  SING N N 44 
8VI C22 H221 SING N N 45 
8VI C22 H222 SING N N 46 
8VI C22 H223 SING N N 47 
8VI C27 H27  SING N N 48 
8VI C31 H311 SING N N 49 
8VI C31 H312 SING N N 50 
8VI C31 H313 SING N N 51 
8VI C38 H381 SING N N 52 
8VI C38 H382 SING N N 53 
8VI C38 H383 SING N N 54 
8VI C43 H43  SING N N 55 
8VI C47 H471 SING N N 56 
8VI C47 H472 SING N N 57 
8VI C58 H58  SING N N 58 
8VI C50 H501 SING N N 59 
8VI C50 H502 SING N N 60 
8VI N53 H53  SING N N 61 
8VI C55 H551 SING N N 62 
8VI C55 H552 SING N N 63 
8VI C60 H601 SING N N 64 
8VI C60 H602 SING N N 65 
8VI C60 H603 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8VI InChI            InChI                1.03  "InChI=1S/C24H31N5O3/c1-6-28(23(30)17-9-7-8-10-22(17)32-5)20-13-18-19(27(4)24(31)26(18)3)14-21(20)29-12-11-25-15-16(29)2/h7-10,13-14,16,25H,6,11-12,15H2,1-5H3/t16-/m1/s1" 
8VI InChIKey         InChI                1.03  WFXIHQFRQPGCCR-MRXNPFEDSA-N                                                                                                                                                
8VI SMILES_CANONICAL CACTVS               3.385 "CCN(C(=O)c1ccccc1OC)c2cc3N(C)C(=O)N(C)c3cc2N4CCNC[C@H]4C"                                                                                                                 
8VI SMILES           CACTVS               3.385 "CCN(C(=O)c1ccccc1OC)c2cc3N(C)C(=O)N(C)c3cc2N4CCNC[CH]4C"                                                                                                                  
8VI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCN(c1cc2c(cc1N3CCNC[C@H]3C)N(C(=O)N2C)C)C(=O)c4ccccc4OC"                                                                                                                 
8VI SMILES           "OpenEye OEToolkits" 1.7.6 "CCN(c1cc2c(cc1N3CCNCC3C)N(C(=O)N2C)C)C(=O)c4ccccc4OC"                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8VI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-N-ethyl-2-methoxy-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8VI "Create component" 2016-05-16 EBI  
8VI "Initial release"  2016-07-06 RCSB 
# 
