data_88I
# 
_chem_comp.id                                    88I 
_chem_comp.name                                  "(3~{S},5~{S})-5-methyl-3-[(13~{R})-13-oxidanyl-13-[(2~{R},5~{R})-5-[(2~{R},5~{R})-5-[(1~{R})-1-oxidanylundecyl]oxolan-2-yl]oxolan-2-yl]tridecyl]oxolan-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C37 H68 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-10-07 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        608.932 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     88I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7PSA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
88I C1    C1  C 0 1 N N R 217.919 239.993 296.443 -2.636  -2.332 -1.681 C1    88I 1   
88I "C1'" C2  C 0 1 N N R 216.063 243.019 295.735 -4.745  -2.914 1.187  "C1'" 88I 2   
88I C10   C3  C 0 1 N N N 225.558 235.321 296.652 8.448   -0.590 -0.578 C10   88I 3   
88I C11   C4  C 0 1 N N N 227.060 235.384 296.277 9.430   0.285  0.204  C11   88I 4   
88I C12   C5  C 0 1 N N N 227.351 234.687 294.943 10.861  -0.050 -0.220 C12   88I 5   
88I C13   C6  C 0 1 N N N 228.206 233.425 295.120 11.843  0.826  0.562  C13   88I 6   
88I C16   C7  C 0 1 N N N 226.592 230.190 294.685 14.095  2.819  0.527  C16   88I 7   
88I C17   C8  C 0 1 N N S 227.509 228.868 296.213 16.099  2.184  -0.388 C17   88I 8   
88I C18   C9  C 0 1 N N N 228.265 227.658 295.705 17.578  2.536  -0.215 C18   88I 9   
88I C2    C10 C 0 1 N N N 220.879 236.567 296.925 2.191   -1.337 -0.871 C2    88I 10  
88I "C2'" C11 C 0 1 N N R 217.197 242.073 296.144 -3.885  -3.381 0.011  "C2'" 88I 11  
88I C20   C12 C 0 1 N N N 218.247 240.702 297.751 -3.634  -3.290 -2.367 C20   88I 12  
88I C21   C13 C 0 1 N N N 217.586 242.088 297.640 -4.734  -3.452 -1.282 C21   88I 13  
88I C24   C14 C 0 1 N N N 214.643 242.644 296.243 -3.860  -2.654 2.432  C24   88I 14  
88I C25   C15 C 0 1 N N N 214.088 244.117 296.423 -4.736  -1.635 3.209  C25   88I 15  
88I C28   C16 C 0 1 N N N 216.461 246.988 296.039 -7.544  0.149  1.242  C28   88I 16  
88I C29   C17 C 0 1 N N N 216.192 248.518 296.067 -8.960  0.567  1.645  C29   88I 17  
88I C30   C18 C 0 1 N N N 217.432 249.396 295.864 -9.647  1.247  0.459  C30   88I 18  
88I C31   C19 C 0 1 N N N 217.161 250.752 296.543 -11.063 1.665  0.861  C31   88I 19  
88I C32   C20 C 0 1 N N N 217.077 251.916 295.561 -11.750 2.345  -0.325 C32   88I 20  
88I C33   C21 C 0 1 N N N 217.023 253.196 296.418 -13.166 2.763  0.077  C33   88I 21  
88I C34   C22 C 0 1 N N N 215.998 254.176 295.881 -13.853 3.444  -1.108 C34   88I 22  
88I C35   C23 C 0 1 N N N 216.200 255.494 296.603 -15.269 3.861  -0.706 C35   88I 23  
88I C36   C24 C 0 1 N N N 214.961 256.375 296.540 -15.956 4.542  -1.892 C36   88I 24  
88I C37   C25 C 0 1 N N N 214.566 256.656 295.107 -17.372 4.959  -1.490 C37   88I 25  
88I C4    C26 C 0 1 N N N 228.374 230.096 296.111 15.711  1.012  0.542  C4    88I 26  
88I "C4'" C27 C 0 1 N N R 215.352 244.812 296.908 -5.402  -0.837 2.068  "C4'" 88I 27  
88I C5    C28 C 0 1 N N S 227.682 230.986 295.428 14.255  1.366  0.921  C5    88I 28  
88I "C5'" C29 C 0 1 N N R 215.346 246.364 296.901 -6.857  -0.531 2.428  "C5'" 88I 29  
88I C6    C30 C 0 1 N N N 227.431 232.402 295.933 13.274  0.491  0.139  C6    88I 30  
88I C7    C31 C 0 1 N N N 222.838 235.974 298.348 4.604   -0.796 -0.513 C7    88I 31  
88I C8    C32 C 0 1 N N N 220.259 238.825 295.957 -0.222  -1.877 -1.230 C8    88I 32  
88I C9    C33 C 0 1 N N N 225.353 236.053 297.998 7.017   -0.255 -0.154 C9    88I 33  
88I CAA   C34 C 0 1 N N N 224.039 236.882 298.042 6.036   -1.131 -0.937 CAA   88I 34  
88I CAB   C35 C 0 1 N N N 221.533 236.800 298.288 3.623   -1.671 -1.295 CAB   88I 35  
88I CAC   C36 C 0 1 N N N 219.735 237.597 296.741 1.210   -2.212 -1.653 CAC   88I 36  
88I CAD   C37 C 0 1 N N R 219.186 239.847 295.531 -1.203  -2.752 -2.012 CAD   88I 37  
88I "O2'" O1  O 0 1 N N N 216.947 240.746 295.772 -2.856  -2.418 -0.268 "O2'" 88I 38  
88I O3    O2  O 0 1 N N N 226.412 228.993 295.378 15.255  3.290  0.049  O3    88I 39  
88I "O3'" O3  O 0 1 N N N 225.995 230.524 293.717 13.073  3.456  0.624  "O3'" 88I 40  
88I "O4'" O4  O 0 1 N N N 216.375 244.313 296.135 -5.352  -1.646 0.887  "O4'" 88I 41  
88I "O5'" O5  O 0 1 N N N 214.170 246.962 296.466 -7.537  -1.749 2.738  "O5'" 88I 42  
88I OP3   O6  O 0 1 N N N 218.799 239.515 294.248 -1.012  -4.122 -1.650 OP3   88I 43  
88I H1    H1  H 0 1 N N N 217.539 238.986 296.670 -2.810  -1.312 -2.020 H1    88I 44  
88I H38   H2  H 0 1 N N N 216.016 242.997 294.636 -5.510  -3.656 1.413  H38   88I 45  
88I H18   H3  H 0 1 N N N 224.960 235.811 295.869 8.565   -0.402 -1.645 H18   88I 46  
88I H19   H4  H 0 1 N N N 225.244 234.271 296.750 8.653   -1.640 -0.370 H19   88I 47  
88I H20   H5  H 0 1 N N N 227.644 234.892 297.069 9.225   1.335  -0.004 H20   88I 48  
88I H21   H6  H 0 1 N N N 227.362 236.439 296.199 9.313   0.097  1.271  H21   88I 49  
88I H23   H7  H 0 1 N N N 227.887 235.388 294.287 11.066  -1.100 -0.011 H23   88I 50  
88I H22   H8  H 0 1 N N N 226.396 234.405 294.476 10.978  0.138  -1.287 H22   88I 51  
88I H24   H9  H 0 1 N N N 228.447 233.003 294.133 11.638  1.876  0.354  H24   88I 52  
88I H25   H10 H 0 1 N N N 229.137 233.683 295.646 11.726  0.638  1.630  H25   88I 53  
88I H28   H11 H 0 1 N N N 227.209 228.707 297.259 15.888  1.931  -1.427 H28   88I 54  
88I H30   H12 H 0 1 N N N 229.158 227.496 296.326 18.191  1.678  -0.493 H30   88I 55  
88I H31   H13 H 0 1 N N N 227.616 226.772 295.757 17.827  3.383  -0.855 H31   88I 56  
88I H29   H14 H 0 1 N N N 228.570 227.828 294.662 17.770  2.798  0.825  H29   88I 57  
88I H8    H15 H 0 1 N N N 220.470 235.547 296.880 2.075   -1.525 0.196  H8    88I 58  
88I H9    H16 H 0 1 N N N 221.626 236.697 296.129 1.987   -0.286 -1.079 H9    88I 59  
88I H37   H17 H 0 1 N N N 218.089 242.411 295.596 -3.445  -4.355 0.229  H37   88I 60  
88I H34   H18 H 0 1 N N N 217.833 240.145 298.605 -4.044  -2.840 -3.271 H34   88I 61  
88I H33   H19 H 0 1 N N N 219.336 240.803 297.872 -3.162  -4.247 -2.591 H33   88I 62  
88I H35   H20 H 0 1 N N N 218.293 242.898 297.871 -5.235  -4.416 -1.371 H35   88I 63  
88I H36   H21 H 0 1 N N N 216.704 242.174 298.292 -5.452  -2.633 -1.326 H36   88I 64  
88I H39   H22 H 0 1 N N N 214.071 242.070 295.499 -3.714  -3.567 3.008  H39   88I 65  
88I H40   H23 H 0 1 N N N 214.672 242.089 297.192 -2.903  -2.214 2.148  H40   88I 66  
88I H41   H24 H 0 1 N N N 213.729 244.538 295.472 -5.485  -2.148 3.812  H41   88I 67  
88I H42   H25 H 0 1 N N N 213.283 244.162 297.172 -4.118  -0.984 3.828  H42   88I 68  
88I H46   H26 H 0 1 N N N 216.411 246.607 295.008 -7.595  -0.546 0.404  H46   88I 69  
88I H47   H27 H 0 1 N N N 217.450 246.763 296.465 -6.975  1.031  0.949  H47   88I 70  
88I H48   H28 H 0 1 N N N 215.751 248.770 297.043 -9.530  -0.315 1.938  H48   88I 71  
88I H49   H29 H 0 1 N N N 215.473 248.753 295.269 -8.910  1.262  2.483  H49   88I 72  
88I H50   H30 H 0 1 N N N 218.310 248.916 296.322 -9.078  2.129  0.166  H50   88I 73  
88I H51   H31 H 0 1 N N N 217.614 249.545 294.789 -9.698  0.552  -0.379 H51   88I 74  
88I H52   H32 H 0 1 N N N 217.975 250.954 297.255 -11.633 0.783  1.154  H52   88I 75  
88I H53   H33 H 0 1 N N N 216.207 250.685 297.087 -11.013 2.360  1.699  H53   88I 76  
88I H54   H34 H 0 1 N N N 216.170 251.831 294.945 -11.181 3.227  -0.618 H54   88I 77  
88I H55   H35 H 0 1 N N N 217.963 251.930 294.909 -11.801 1.651  -1.163 H55   88I 78  
88I H56   H36 H 0 1 N N N 216.754 252.925 297.450 -13.736 1.882  0.370  H56   88I 79  
88I H57   H37 H 0 1 N N N 218.014 253.674 296.411 -13.116 3.458  0.915  H57   88I 80  
88I H59   H38 H 0 1 N N N 216.143 254.315 294.799 -13.284 4.325  -1.401 H59   88I 81  
88I H58   H39 H 0 1 N N N 214.983 253.797 296.069 -13.904 2.749  -1.947 H58   88I 82  
88I H60   H40 H 0 1 N N N 216.436 255.289 297.658 -15.839 2.980  -0.413 H60   88I 83  
88I H61   H41 H 0 1 N N N 217.040 256.029 296.137 -15.219 4.556  0.132  H61   88I 84  
88I H62   H42 H 0 1 N N N 215.171 257.328 297.048 -15.387 5.424  -2.185 H62   88I 85  
88I H63   H43 H 0 1 N N N 214.130 255.864 297.048 -16.007 3.847  -2.730 H63   88I 86  
88I H65   H44 H 0 1 N N N 213.670 257.293 295.091 -17.942 4.078  -1.197 H65   88I 87  
88I H66   H45 H 0 1 N N N 215.391 257.171 294.594 -17.322 5.655  -0.652 H66   88I 88  
88I H64   H46 H 0 1 N N N 214.350 255.707 294.594 -17.862 5.444  -2.335 H64   88I 89  
88I H32   H47 H 0 1 N N N 229.311 229.858 295.586 15.754  0.063  0.009  H32   88I 90  
88I H67   H48 H 0 1 N N N 228.605 230.483 297.115 16.350  0.989  1.425  H67   88I 91  
88I H43   H49 H 0 1 N N N 215.510 244.502 297.951 -4.859  0.094  1.901  H43   88I 92  
88I H68   H50 H 0 1 N N N 228.363 231.200 294.591 14.100  1.245  1.993  H68   88I 93  
88I H44   H51 H 0 1 N N N 215.536 246.681 297.937 -6.886  0.131  3.293  H44   88I 94  
88I H27   H52 H 0 1 N N N 227.746 232.468 296.985 13.479  -0.559 0.347  H27   88I 95  
88I H26   H53 H 0 1 N N N 226.356 232.624 295.857 13.391  0.679  -0.929 H26   88I 96  
88I H13   H54 H 0 1 N N N 222.793 235.164 297.605 4.488   -0.984 0.554  H13   88I 97  
88I H12   H55 H 0 1 N N N 222.952 235.543 299.354 4.400   0.254  -0.721 H12   88I 98  
88I H4    H56 H 0 1 N N N 220.758 238.459 295.048 -0.338  -2.065 -0.162 H4    88I 99  
88I H5    H57 H 0 1 N N N 220.990 239.346 296.592 -0.426  -0.827 -1.438 H5    88I 100 
88I H17   H58 H 0 1 N N N 225.323 235.304 298.803 6.900   -0.443 0.913  H17   88I 101 
88I H16   H59 H 0 1 N N N 226.202 236.733 298.161 6.813   0.795  -0.363 H16   88I 102 
88I H15   H60 H 0 1 N N N 224.121 237.649 298.826 6.240   -2.181 -0.728 H15   88I 103 
88I H14   H61 H 0 1 N N N 223.886 237.369 297.067 6.152   -0.943 -2.004 H14   88I 104 
88I H10   H62 H 0 1 N N N 221.763 237.868 298.412 3.827   -2.722 -1.087 H10   88I 105 
88I H11   H63 H 0 1 N N N 220.851 236.476 299.088 3.739   -1.483 -2.362 H11   88I 106 
88I H7    H64 H 0 1 N N N 219.372 237.921 297.728 1.326   -2.024 -2.720 H7    88I 107 
88I H6    H65 H 0 1 N N N 218.910 237.131 296.182 1.414   -3.262 -1.445 H6    88I 108 
88I H2    H66 H 0 1 N N N 219.674 240.833 295.512 -1.026  -2.631 -3.080 H2    88I 109 
88I H45   H67 H 0 1 N N N 213.437 246.618 296.962 -7.551  -2.387 2.012  H45   88I 110 
88I H3    H68 H 0 1 N N N 218.135 240.125 293.949 -1.153  -4.304 -0.711 H3    88I 111 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
88I "O3'" C16   DOUB N N 1   
88I OP3   CAD   SING N N 2   
88I C16   O3    SING N N 3   
88I C16   C5    SING N N 4   
88I C12   C13   SING N N 5   
88I C12   C11   SING N N 6   
88I C37   C36   SING N N 7   
88I C13   C6    SING N N 8   
88I O3    C17   SING N N 9   
88I C5    C6    SING N N 10  
88I C5    C4    SING N N 11  
88I CAD   C8    SING N N 12  
88I CAD   C1    SING N N 13  
88I C32   C33   SING N N 14  
88I C32   C31   SING N N 15  
88I C18   C17   SING N N 16  
88I "C1'" "O4'" SING N N 17  
88I "C1'" "C2'" SING N N 18  
88I "C1'" C24   SING N N 19  
88I "O2'" "C2'" SING N N 20  
88I "O2'" C1    SING N N 21  
88I C30   C29   SING N N 22  
88I C30   C31   SING N N 23  
88I C34   C33   SING N N 24  
88I C34   C35   SING N N 25  
88I C8    CAC   SING N N 26  
88I C28   C29   SING N N 27  
88I C28   "C5'" SING N N 28  
88I C4    C17   SING N N 29  
88I "O4'" "C4'" SING N N 30  
88I "C2'" C21   SING N N 31  
88I C24   C25   SING N N 32  
88I C11   C10   SING N N 33  
88I C25   "C4'" SING N N 34  
88I C1    C20   SING N N 35  
88I "O5'" "C5'" SING N N 36  
88I C36   C35   SING N N 37  
88I C10   C9    SING N N 38  
88I CAC   C2    SING N N 39  
88I "C5'" "C4'" SING N N 40  
88I C2    CAB   SING N N 41  
88I C21   C20   SING N N 42  
88I C9    CAA   SING N N 43  
88I CAA   C7    SING N N 44  
88I CAB   C7    SING N N 45  
88I C1    H1    SING N N 46  
88I "C1'" H38   SING N N 47  
88I C10   H18   SING N N 48  
88I C10   H19   SING N N 49  
88I C11   H20   SING N N 50  
88I C11   H21   SING N N 51  
88I C12   H23   SING N N 52  
88I C12   H22   SING N N 53  
88I C13   H24   SING N N 54  
88I C13   H25   SING N N 55  
88I C17   H28   SING N N 56  
88I C18   H30   SING N N 57  
88I C18   H31   SING N N 58  
88I C18   H29   SING N N 59  
88I C2    H8    SING N N 60  
88I C2    H9    SING N N 61  
88I "C2'" H37   SING N N 62  
88I C20   H34   SING N N 63  
88I C20   H33   SING N N 64  
88I C21   H35   SING N N 65  
88I C21   H36   SING N N 66  
88I C24   H39   SING N N 67  
88I C24   H40   SING N N 68  
88I C25   H41   SING N N 69  
88I C25   H42   SING N N 70  
88I C28   H46   SING N N 71  
88I C28   H47   SING N N 72  
88I C29   H48   SING N N 73  
88I C29   H49   SING N N 74  
88I C30   H50   SING N N 75  
88I C30   H51   SING N N 76  
88I C31   H52   SING N N 77  
88I C31   H53   SING N N 78  
88I C32   H54   SING N N 79  
88I C32   H55   SING N N 80  
88I C33   H56   SING N N 81  
88I C33   H57   SING N N 82  
88I C34   H59   SING N N 83  
88I C34   H58   SING N N 84  
88I C35   H60   SING N N 85  
88I C35   H61   SING N N 86  
88I C36   H62   SING N N 87  
88I C36   H63   SING N N 88  
88I C37   H65   SING N N 89  
88I C37   H66   SING N N 90  
88I C37   H64   SING N N 91  
88I C4    H32   SING N N 92  
88I C4    H67   SING N N 93  
88I "C4'" H43   SING N N 94  
88I C5    H68   SING N N 95  
88I "C5'" H44   SING N N 96  
88I C6    H27   SING N N 97  
88I C6    H26   SING N N 98  
88I C7    H13   SING N N 99  
88I C7    H12   SING N N 100 
88I C8    H4    SING N N 101 
88I C8    H5    SING N N 102 
88I C9    H17   SING N N 103 
88I C9    H16   SING N N 104 
88I CAA   H15   SING N N 105 
88I CAA   H14   SING N N 106 
88I CAB   H10   SING N N 107 
88I CAB   H11   SING N N 108 
88I CAC   H7    SING N N 109 
88I CAC   H6    SING N N 110 
88I CAD   H2    SING N N 111 
88I "O5'" H45   SING N N 112 
88I OP3   H3    SING N N 113 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
88I InChI            InChI                1.06  "InChI=1S/C37H68O6/c1-3-4-5-6-7-13-16-19-22-31(38)33-24-26-35(42-33)36-27-25-34(43-36)32(39)23-20-17-14-11-9-8-10-12-15-18-21-30-28-29(2)41-37(30)40/h29-36,38-39H,3-28H2,1-2H3/t29-,30-,31+,32+,33+,34+,35+,36+/m0/s1" 
88I InChIKey         InChI                1.06  TVBHUCPQEAPMPU-AFRALGOQSA-N                                                                                                                                                                                             
88I SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCC[C@@H](O)[C@H]1CC[C@@H](O1)[C@H]2CC[C@@H](O2)[C@H](O)CCCCCCCCCCCC[C@H]3C[C@H](C)OC3=O"                                                                                                                       
88I SMILES           CACTVS               3.385 "CCCCCCCCCC[CH](O)[CH]1CC[CH](O1)[CH]2CC[CH](O2)[CH](O)CCCCCCCCCCCC[CH]3C[CH](C)OC3=O"                                                                                                                                  
88I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCC[C@H]([C@H]1CC[C@@H](O1)[C@H]2CC[C@@H](O2)[C@@H](CCCCCCCCCCCC[C@H]3C[C@@H](OC3=O)C)O)O"                                                                                                                      
88I SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCC(C1CCC(O1)C2CCC(O2)C(CCCCCCCCCCCCC3CC(OC3=O)C)O)O"                                                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           88I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{S},5~{S})-5-methyl-3-[(13~{R})-13-oxidanyl-13-[(2~{R},5~{R})-5-[(2~{R},5~{R})-5-[(1~{R})-1-oxidanylundecyl]oxolan-2-yl]oxolan-2-yl]tridecyl]oxolan-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
88I "Create component"  2021-10-07 PDBE 
88I "Initial release"   2022-04-06 RCSB 
88I "Modify descriptor" 2022-08-22 RCSB 
# 
