data_75I
# 
_chem_comp.id                                    75I 
_chem_comp.name                                  "DL-6-deoxy-6-hydroxy-methyl-scyllo-inositol 1,2,4-trisphosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H17 O15 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[(1R,2S,3S,4R,5S,6R)-2-(hydroxymethyl)-3,5-bis(oxidanyl)-4,6-diphosphonooxy-cyclohexyl] dihydrogen phosphate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-12 
_chem_comp.pdbx_modified_date                    2024-02-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        434.122 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     75I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PPD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
75I C2  C1  C 0 1 N N R N N N 12.243 29.851 86.708 -0.404 -0.631 0.006  C2  75I 1  
75I C3  C2  C 0 1 N N S N N N 10.853 29.934 86.107 0.944  -0.773 0.715  C3  75I 2  
75I C4  C3  C 0 1 N N R N N N 10.993 29.803 84.604 1.944  0.216  0.111  C4  75I 3  
75I C5  C4  C 0 1 N N S N N N 11.762 28.546 84.202 1.422  1.643  0.290  C5  75I 4  
75I O21 O1  O 0 1 N N N N N N 14.551 27.385 89.329 -3.408 2.830  0.865  O21 75I 5  
75I O06 O2  O 0 1 N N N N N N 13.361 26.081 84.972 0.426  4.125  -0.905 O06 75I 6  
75I O12 O3  O 0 1 N N N N N N 13.864 31.529 88.946 -2.940 -3.635 0.685  O12 75I 7  
75I O2  O4  O 0 1 N N N N N N 12.108 29.871 88.135 -1.338 -1.554 0.569  O2  75I 8  
75I O22 O5  O 0 1 N N N N N N 11.455 32.186 88.520 -1.035 -3.533 -0.968 O22 75I 9  
75I C06 C5  C 0 1 N N N N N N 13.939 27.257 84.414 -0.449 3.211  -0.241 C06 75I 10 
75I P2  P1  P 0 1 N N N N N N 12.411 31.150 89.086 -2.060 -2.706 -0.292 P2  75I 11 
75I O32 O6  O 0 1 N N N N N N 12.054 30.666 90.475 -3.018 -2.031 -1.396 O32 75I 12 
75I C1  C6  C 0 1 N N R N N N 12.903 28.539 86.324 -0.926 0.796  0.184  C1  75I 13 
75I C6  C7  C 0 1 N N S N N N 13.159 28.502 84.829 0.074  1.785  -0.419 C6  75I 14 
75I O1  O7  O 0 1 N N N N N N 14.164 28.409 87.011 -2.186 0.929  -0.478 O1  75I 15 
75I O3  O8  O 0 1 N N N N N N 10.231 31.178 86.423 1.432  -2.105 0.548  O3  75I 16 
75I O4  O9  O 0 1 N N N N N N 9.676  29.768 84.022 3.204  0.083  0.774  O4  75I 17 
75I O5  O10 O 0 1 N N N N N N 11.875 28.526 82.789 2.356  2.566  -0.274 O5  75I 18 
75I P1  P2  P 0 1 N N N N N N 14.707 27.115 87.846 -3.542 1.332  0.289  P1  75I 19 
75I O11 O11 O 0 1 N N N N N N 13.824 25.992 87.360 -3.773 0.393  1.409  O11 75I 20 
75I O31 O12 O 0 1 N N N N N N 16.157 26.959 87.432 -4.781 1.260  -0.736 O31 75I 21 
75I P4  P3  P 0 1 N N N N N N 9.208  30.457 82.633 4.560  -0.320 0.006  P4  75I 22 
75I O14 O13 O 0 1 N N N N N N 9.462  31.930 82.838 4.426  -1.818 -0.569 O14 75I 23 
75I O24 O14 O 0 1 N N N N N N 10.161 29.834 81.622 4.791  0.619  -1.114 O24 75I 24 
75I O34 O15 O 0 1 N N N N N N 7.759  30.116 82.357 5.799  -0.248 1.031  O34 75I 25 
75I H1  H1  H 0 1 N N N N N N 12.854 30.695 86.356 -0.280 -0.842 -1.056 H1  75I 26 
75I H2  H2  H 0 1 N N N N N N 10.248 29.097 86.486 0.820  -0.561 1.777  H2  75I 27 
75I H3  H3  H 0 1 N N N N N N 11.539 30.680 84.226 2.068  0.004  -0.951 H3  75I 28 
75I H4  H4  H 0 1 N N N N N N 11.198 27.667 84.547 1.298  1.854  1.352  H4  75I 29 
75I H5  H5  H 0 1 N N N N N N 13.911 26.786 89.695 -3.255 3.500  0.184  H5  75I 30 
75I H6  H6  H 0 1 N N N N N N 13.543 26.049 85.904 0.156  5.051  -0.834 H6  75I 31 
75I H7  H7  H 0 1 N N N N N N 13.931 32.373 88.516 -3.405 -4.353 0.233  H7  75I 32 
75I H8  H8  H 0 1 N N N N N N 13.930 27.176 83.317 -0.488 3.454  0.821  H8  75I 33 
75I H9  H9  H 0 1 N N N N N N 14.977 27.349 84.766 -1.448 3.289  -0.669 H9  75I 34 
75I H10 H10 H 0 1 N N N N N N 11.265 31.105 90.771 -3.715 -1.474 -1.024 H10 75I 35 
75I H11 H11 H 0 1 N N N N N N 12.236 27.708 86.596 -1.050 1.008  1.246  H11 75I 36 
75I H12 H12 H 0 1 N N N N N N 13.720 29.400 84.530 0.198  1.573  -1.481 H12 75I 37 
75I H13 H13 H 0 1 N N N N N N 10.657 31.563 87.180 2.285  -2.268 0.973  H13 75I 38 
75I H14 H14 H 0 1 N N N N N N 11.181 29.051 82.408 3.235  2.531  0.129  H14 75I 39 
75I H15 H15 H 0 1 N N N N N N 16.258 26.161 86.926 -5.633 1.491  -0.341 H15 75I 40 
75I H16 H16 H 0 1 N N N N N N 10.185 32.207 82.288 4.273  -2.488 0.111  H16 75I 41 
75I H17 H17 H 0 1 N N N N N N 7.705  29.563 81.586 6.651  -0.479 0.636  H17 75I 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
75I O24 P4  DOUB N N 1  
75I O34 P4  SING N N 2  
75I P4  O14 SING N N 3  
75I P4  O4  SING N N 4  
75I O5  C5  SING N N 5  
75I O4  C4  SING N N 6  
75I C5  C4  SING N N 7  
75I C5  C6  SING N N 8  
75I C06 C6  SING N N 9  
75I C06 O06 SING N N 10 
75I C4  C3  SING N N 11 
75I C6  C1  SING N N 12 
75I C3  O3  SING N N 13 
75I C3  C2  SING N N 14 
75I C1  C2  SING N N 15 
75I C1  O1  SING N N 16 
75I C2  O2  SING N N 17 
75I O1  P1  SING N N 18 
75I O11 P1  DOUB N N 19 
75I O31 P1  SING N N 20 
75I P1  O21 SING N N 21 
75I O2  P2  SING N N 22 
75I O22 P2  DOUB N N 23 
75I O12 P2  SING N N 24 
75I P2  O32 SING N N 25 
75I C2  H1  SING N N 26 
75I C3  H2  SING N N 27 
75I C4  H3  SING N N 28 
75I C5  H4  SING N N 29 
75I O21 H5  SING N N 30 
75I O06 H6  SING N N 31 
75I O12 H7  SING N N 32 
75I C06 H8  SING N N 33 
75I C06 H9  SING N N 34 
75I O32 H10 SING N N 35 
75I C1  H11 SING N N 36 
75I C6  H12 SING N N 37 
75I O3  H13 SING N N 38 
75I O5  H14 SING N N 39 
75I O31 H15 SING N N 40 
75I O14 H16 SING N N 41 
75I O34 H17 SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
75I InChI            InChI                1.06  "InChI=1S/C7H17O15P3/c8-1-2-3(9)6(21-24(14,15)16)4(10)7(22-25(17,18)19)5(2)20-23(11,12)13/h2-10H,1H2,(H2,11,12,13)(H2,14,15,16)(H2,17,18,19)/t2-,3-,4-,5+,6+,7+/m0/s1" 
75I InChIKey         InChI                1.06  QCSGZYRCELECJV-YQHQLQMSSA-N                                                                                                                                            
75I SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1[C@H](O)[C@@H](O[P](O)(O)=O)[C@H](O)[C@@H](O[P](O)(O)=O)[C@@H]1O[P](O)(O)=O"                                                                                  
75I SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O[P](O)(O)=O)[CH](O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O"                                                                                           
75I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]1[C@@H]([C@H]([C@@H]([C@H]([C@@H]1OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O)O)O"                                                                                      
75I SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O)O)O"                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           75I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(1~{R},2~{S},3~{S},4~{R},5~{S},6~{R})-2-(hydroxymethyl)-3,5-bis(oxidanyl)-4,6-diphosphonooxy-cyclohexyl] dihydrogen phosphate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      75I 
_pdbx_chem_comp_synonyms.name         "[(1R,2S,3S,4R,5S,6R)-2-(hydroxymethyl)-3,5-bis(oxidanyl)-4,6-diphosphonooxy-cyclohexyl] dihydrogen phosphate" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
75I "Create component" 2023-07-12 PDBE 
75I "Initial release"  2024-02-28 RCSB 
# 
