data_6YI
#

_chem_comp.id                                   6YI
_chem_comp.name                                 "(4S)-N-(3H-indazol-4-yl)-3-[1-(4-methoxyphenyl)cyclopentyl]carbonyl-1,1-bis(oxidanylidene)-1,3-thiazolidine-4-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H26 N4 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-09-27
_chem_comp.pdbx_modified_date                   2022-04-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       482.552
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6YI
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7VI0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6YI  N    N1   N  0  1  N  N  N  -11.036   -9.348  17.758  -0.706  -1.234  -0.230  N    6YI   1  
6YI  CA   C1   C  0  1  N  N  S  -11.440  -10.812  17.568   0.671  -1.694  -0.120  CA   6YI   2  
6YI  C    C2   C  0  1  N  N  N  -10.469  -11.785  17.824   1.594  -0.543  -0.426  C    6YI   3  
6YI  O    O1   O  0  1  N  N  N   -9.874  -11.808  18.880   1.135   0.545  -0.706  O    6YI   4  
6YI  CB   C3   C  0  1  N  N  N  -12.686  -11.033  18.416   1.010  -2.245   1.283  CB   6YI   5  
6YI  CAF  C4   C  0  1  Y  N  N   -9.403  -13.676  17.030   3.785   0.366  -0.581  CAF  6YI   6  
6YI  CAG  C5   C  0  1  Y  N  N   -8.037  -13.458  16.976   3.369   1.455  -1.322  CAG  6YI   7  
6YI  CAH  C6   C  0  1  Y  N  N   -7.193  -14.540  17.132   4.213   2.541  -1.510  CAH  6YI   8  
6YI  CAI  C7   C  0  1  Y  N  N   -7.728  -15.800  17.323   5.476   2.552  -0.963  CAI  6YI   9  
6YI  CAJ  C8   C  0  1  Y  N  N   -9.047  -15.941  17.350   5.920   1.467  -0.211  CAJ  6YI  10  
6YI  CAK  C9   C  0  1  Y  N  N   -9.854  -14.910  17.209   5.072   0.361  -0.015  CAK  6YI  11  
6YI  CAL  C10  C  0  1  Y  N  N  -11.049  -15.439  17.300   5.786  -0.570   0.776  CAL  6YI  12  
6YI  CAQ  C11  C  0  1  N  N  N  -11.149   -8.941  19.211  -1.500  -1.354   1.008  CAQ  6YI  13  
6YI  CAT  C12  C  0  1  N  N  N  -10.655   -8.725  16.625  -1.214  -0.731  -1.372  CAT  6YI  14  
6YI  CAV  C13  C  0  1  N  N  N  -10.245   -7.228  16.672  -2.677  -0.378  -1.455  CAV  6YI  15  
6YI  CAW  C14  C  0  1  Y  N  N   -9.203   -6.971  17.571  -2.994   0.736  -0.491  CAW  6YI  16  
6YI  CAX  C15  C  0  1  Y  N  N   -8.045   -7.728  17.532  -1.972   1.368   0.193  CAX  6YI  17  
6YI  CAY  C16  C  0  1  Y  N  N   -7.020   -7.487  18.433  -2.260   2.390   1.077  CAY  6YI  18  
6YI  CAZ  C17  C  0  1  Y  N  N   -7.149   -6.489  19.385  -3.576   2.782   1.278  CAZ  6YI  19  
6YI  CBA  C18  C  0  1  Y  N  N   -8.311   -5.743  19.435  -4.599   2.146   0.591  CBA  6YI  20  
6YI  CBB  C19  C  0  1  Y  N  N   -9.331   -5.980  18.531  -4.306   1.128  -0.296  CBB  6YI  21  
6YI  CBD  C20  C  0  1  N  N  N   -6.398   -5.134  21.093  -5.238   4.137   2.304  CBD  6YI  22  
6YI  CBE  C21  C  0  1  N  N  N   -9.817   -6.756  15.306  -3.038   0.047  -2.893  CBE  6YI  23  
6YI  CBF  C22  C  0  1  N  N  N  -11.045   -6.154  14.640  -3.591  -1.245  -3.544  CBF  6YI  24  
6YI  CBG  C23  C  0  1  N  N  N  -12.159   -6.365  15.610  -4.389  -1.896  -2.388  CBG  6YI  25  
6YI  CBH  C24  C  0  1  N  N  N  -11.459   -6.360  16.930  -3.536  -1.614  -1.133  CBH  6YI  26  
6YI  NAE  N2   N  0  1  N  N  N  -10.308  -12.706  16.872   2.929  -0.721  -0.390  NAE  6YI  27  
6YI  NAM  N3   N  0  1  Y  N  N  -10.879  -16.741  17.491   6.962  -0.078   1.039  NAM  6YI  28  
6YI  NAN  N4   N  0  1  Y  N  N   -9.820  -17.003  17.517   7.090   1.184   0.446  NAN  6YI  29  
6YI  OAR  O2   O  0  1  N  N  N  -13.815   -8.509  19.326  -1.041  -3.971   1.360  OAR  6YI  30  
6YI  OAS  O3   O  0  1  N  N  N  -12.784   -9.964  21.091  -0.729  -2.493   3.309  OAS  6YI  31  
6YI  OAU  O4   O  0  1  N  N  N  -10.647   -9.322  15.558  -0.495  -0.563  -2.334  OAU  6YI  32  
6YI  OBC  O5   O  0  1  N  N  N   -6.143   -6.261  20.261  -3.861   3.787   2.147  OBC  6YI  33  
6YI  SAP  S1   S  0  1  N  N  N  -12.766   -9.557  19.640  -0.655  -2.718   1.908  SAP  6YI  34  
6YI  H1   H1   H  0  1  N  N  N  -11.755  -10.914  16.519   0.837  -2.482  -0.855  H1   6YI  35  
6YI  H2   H2   H  0  1  N  N  N  -13.583  -11.050  17.779   1.663  -3.115   1.213  H2   6YI  36  
6YI  H3   H3   H  0  1  N  N  N  -12.609  -11.982  18.967   1.457  -1.472   1.908  H3   6YI  37  
6YI  H4   H4   H  0  1  N  N  N   -7.641  -12.466  16.816   2.382   1.462  -1.758  H4   6YI  38  
6YI  H5   H5   H  0  1  N  N  N   -6.122  -14.402  17.105   3.876   3.386  -2.092  H5   6YI  39  
6YI  H6   H6   H  0  1  N  N  N   -7.082  -16.657  17.448   6.124   3.403  -1.117  H6   6YI  40  
6YI  H7   H7   H  0  1  N  N  N  -11.991  -14.916  17.233   5.416  -1.529   1.108  H7   6YI  41  
6YI  H8   H8   H  0  1  N  N  N  -10.366   -9.414  19.821  -1.459  -0.429   1.584  H8   6YI  42  
6YI  H9   H9   H  0  1  N  N  N  -11.093   -7.848  19.326  -2.531  -1.622   0.780  H9   6YI  43  
6YI  H10  H10  H  0  1  N  N  N   -7.940   -8.511  16.795  -0.948   1.063   0.036  H10  6YI  44  
6YI  H11  H11  H  0  1  N  N  N   -6.118   -8.079  18.393  -1.461   2.884   1.611  H11  6YI  45  
6YI  H12  H12  H  0  1  N  N  N   -8.423   -4.972  20.183  -5.624   2.449   0.746  H12  6YI  46  
6YI  H13  H13  H  0  1  N  N  N  -10.234   -5.388  18.574  -5.102   0.635  -0.834  H13  6YI  47  
6YI  H14  H14  H  0  1  N  N  N   -5.555   -4.990  21.785  -5.643   4.456   1.344  H14  6YI  48  
6YI  H15  H15  H  0  1  N  N  N   -6.517   -4.236  20.468  -5.794   3.271   2.664  H15  6YI  49  
6YI  H16  H16  H  0  1  N  N  N   -7.320   -5.304  21.669  -5.326   4.950   3.024  H16  6YI  50  
6YI  H17  H17  H  0  1  N  N  N   -9.443   -7.604  14.713  -3.802   0.825  -2.881  H17  6YI  51  
6YI  H18  H18  H  0  1  N  N  N   -9.027   -5.996  15.399  -2.150   0.394  -3.422  H18  6YI  52  
6YI  H19  H19  H  0  1  N  N  N  -10.895   -5.081  14.452  -4.248  -1.005  -4.380  H19  6YI  53  
6YI  H20  H20  H  0  1  N  N  N  -11.259   -6.666  13.690  -2.777  -1.895  -3.865  H20  6YI  54  
6YI  H21  H21  H  0  1  N  N  N  -12.896   -5.550  15.550  -5.371  -1.432  -2.293  H21  6YI  55  
6YI  H22  H22  H  0  1  N  N  N  -12.661   -7.327  15.432  -4.488  -2.969  -2.549  H22  6YI  56  
6YI  H23  H23  H  0  1  N  N  N  -11.163   -5.340  17.217  -2.895  -2.468  -0.918  H23  6YI  57  
6YI  H24  H24  H  0  1  N  N  N  -12.095   -6.792  17.717  -4.183  -1.407  -0.281  H24  6YI  58  
6YI  H25  H25  H  0  1  N  N  N  -10.864  -12.670  16.042   3.296  -1.605  -0.231  H25  6YI  59  
6YI  H26  H26  H  0  1  N  N  N   -9.475  -17.932  17.651   7.870   1.759   0.493  H26  6YI  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6YI  CBF  CBE  SING  N  N   1  
6YI  CBF  CBG  SING  N  N   2  
6YI  CBE  CAV  SING  N  N   3  
6YI  OAU  CAT  DOUB  N  N   4  
6YI  CBG  CBH  SING  N  N   5  
6YI  CAT  CAV  SING  N  N   6  
6YI  CAT  N    SING  N  N   7  
6YI  CAV  CBH  SING  N  N   8  
6YI  CAV  CAW  SING  N  N   9  
6YI  NAE  CAF  SING  N  N  10  
6YI  NAE  C    SING  N  N  11  
6YI  CAG  CAF  SING  Y  N  12  
6YI  CAG  CAH  DOUB  Y  N  13  
6YI  CAF  CAK  DOUB  Y  N  14  
6YI  CAH  CAI  SING  Y  N  15  
6YI  CAK  CAL  SING  Y  N  16  
6YI  CAK  CAJ  SING  Y  N  17  
6YI  CAL  NAM  DOUB  Y  N  18  
6YI  CAI  CAJ  DOUB  Y  N  19  
6YI  CAJ  NAN  SING  Y  N  20  
6YI  NAM  NAN  SING  Y  N  21  
6YI  CAX  CAW  DOUB  Y  N  22  
6YI  CAX  CAY  SING  Y  N  23  
6YI  CA   N    SING  N  N  24  
6YI  CA   C    SING  N  N  25  
6YI  CA   CB   SING  N  N  26  
6YI  CAW  CBB  SING  Y  N  27  
6YI  N    CAQ  SING  N  N  28  
6YI  C    O    DOUB  N  N  29  
6YI  CB   SAP  SING  N  N  30  
6YI  CAY  CAZ  DOUB  Y  N  31  
6YI  CBB  CBA  DOUB  Y  N  32  
6YI  CAQ  SAP  SING  N  N  33  
6YI  OAR  SAP  DOUB  N  N  34  
6YI  CAZ  CBA  SING  Y  N  35  
6YI  CAZ  OBC  SING  N  N  36  
6YI  SAP  OAS  DOUB  N  N  37  
6YI  OBC  CBD  SING  N  N  38  
6YI  CA   H1   SING  N  N  39  
6YI  CB   H2   SING  N  N  40  
6YI  CB   H3   SING  N  N  41  
6YI  CAG  H4   SING  N  N  42  
6YI  CAH  H5   SING  N  N  43  
6YI  CAI  H6   SING  N  N  44  
6YI  CAL  H7   SING  N  N  45  
6YI  CAQ  H8   SING  N  N  46  
6YI  CAQ  H9   SING  N  N  47  
6YI  CAX  H10  SING  N  N  48  
6YI  CAY  H11  SING  N  N  49  
6YI  CBA  H12  SING  N  N  50  
6YI  CBB  H13  SING  N  N  51  
6YI  CBD  H14  SING  N  N  52  
6YI  CBD  H15  SING  N  N  53  
6YI  CBD  H16  SING  N  N  54  
6YI  CBE  H17  SING  N  N  55  
6YI  CBE  H18  SING  N  N  56  
6YI  CBF  H19  SING  N  N  57  
6YI  CBF  H20  SING  N  N  58  
6YI  CBG  H21  SING  N  N  59  
6YI  CBG  H22  SING  N  N  60  
6YI  CBH  H23  SING  N  N  61  
6YI  CBH  H24  SING  N  N  62  
6YI  NAE  H25  SING  N  N  63  
6YI  NAN  H26  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6YI  InChI             InChI                 1.03   "InChI=1S/C24H26N4O5S/c1-33-17-9-7-16(8-10-17)24(11-2-3-12-24)23(30)28-15-34(31,32)14-21(28)22(29)26-19-5-4-6-20-18(19)13-25-27-20/h4-10,13,21H,2-3,11-12,14-15H2,1H3,(H,25,27)(H,26,29)/t21-/m1/s1"  
6YI  InChIKey          InChI                 1.03   VWZAAFMUYDNGED-OAQYLSRUSA-N  
6YI  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc(cc1)C2(CCCC2)C(=O)N3C[S](=O)(=O)C[C@@H]3C(=O)Nc4cccc5[nH]ncc45"  
6YI  SMILES            CACTVS                3.385  "COc1ccc(cc1)C2(CCCC2)C(=O)N3C[S](=O)(=O)C[CH]3C(=O)Nc4cccc5[nH]ncc45"  
6YI  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1ccc(cc1)C2(CCCC2)C(=O)N3CS(=O)(=O)C[C@@H]3C(=O)Nc4cccc5c4cn[nH]5"  
6YI  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1ccc(cc1)C2(CCCC2)C(=O)N3CS(=O)(=O)CC3C(=O)Nc4cccc5c4cn[nH]5"  
#
_pdbx_chem_comp_identifier.comp_id          6YI
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(4~{S})-~{N}-(1~{H}-indazol-4-yl)-3-[1-(4-methoxyphenyl)cyclopentyl]carbonyl-1,1-bis(oxidanylidene)-1,3-thiazolidine-4-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6YI  "Create component"  2021-09-27  PDBJ  
6YI  "Initial release"   2022-04-27  RCSB  
##
