data_6BI
# 
_chem_comp.id                                    6BI 
_chem_comp.name                                  "[(2~{R},3~{S},4~{R},5~{R})-5-[6-(ethylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H28 Cl N6 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-26 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        522.877 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6BI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7P8P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6BI N   N1  N  0 1 Y N N N N N -0.849 -15.312 6.622  -3.082  -0.922 -0.228 N   6BI 1  
6BI C   C1  C  0 1 N N R N N N -3.100 -14.307 7.125  -4.950  -1.978 1.015  C   6BI 2  
6BI O   O1  O  0 1 N N N N N N -3.776 -14.088 5.891  -4.626  -3.368 1.074  O   6BI 3  
6BI C1  C2  C  0 1 N N S N N N -3.475 -13.206 8.127  -6.483  -1.770 0.946  C1  6BI 4  
6BI C10 C3  C  0 1 N N N N N N 3.371  -20.401 4.313  3.946   -0.165 -0.082 C10 6BI 5  
6BI C17 C4  C  0 1 Y N N N N N 1.579  -15.050 4.059  -0.547  -3.458 -0.849 C17 6BI 6  
6BI C2  C5  C  0 1 N N R N N N -2.194 -13.000 8.943  -6.664  -0.633 -0.078 C2  6BI 7  
6BI C3  C6  C  0 1 N N N N N N -2.252 -13.465 10.376 -7.398  0.541  0.573  C3  6BI 8  
6BI C4  C7  C  0 1 N N R N N N -1.592 -14.105 6.974  -4.478  -1.355 -0.324 C4  6BI 9  
6BI C5  C8  C  0 1 Y N N N N N -0.938 -16.518 7.265  -2.646  0.333  0.078  C5  6BI 10 
6BI C6  C9  C  0 1 Y N N N N N 0.151  -15.460 5.691  -1.973  -1.707 -0.422 C6  6BI 11 
6BI C7  C10 C  0 1 Y N N N N N 0.624  -16.752 5.848  -0.864  -0.866 -0.226 C7  6BI 12 
6BI C8  C11 C  0 1 Y N N N N N 1.678  -17.147 4.999  0.420   -1.419 -0.365 C8  6BI 13 
6BI C9  C12 C  0 1 N N N N N N 3.205  -18.903 4.133  2.880   -1.234 -0.333 C9  6BI 14 
6BI N1  N2  N  0 1 Y N N N N N -0.077 -17.412 6.846  -1.345  0.364  0.076  N1  6BI 15 
6BI N2  N3  N  0 1 N N N N N N 2.227  -18.373 5.068  1.549   -0.640 -0.184 N2  6BI 16 
6BI N4  N4  N  0 1 Y N N N N N 2.144  -16.262 4.099  0.525   -2.707 -0.675 N4  6BI 17 
6BI N5  N5  N  0 1 Y N N N N N 0.587  -14.557 4.809  -1.769  -2.983 -0.733 N5  6BI 18 
6BI O1  O2  O  0 1 N N N N N N -3.855 -12.004 7.466  -7.129  -2.961 0.491  O1  6BI 19 
6BI O11 O3  O  0 1 N N N N N N -3.722 -11.904 13.495 -9.941  2.602  0.366  O11 6BI 20 
6BI O12 O4  O  0 1 N N N N N N -1.136 -13.694 8.246  -5.352  -0.219 -0.494 O12 6BI 21 
6BI O2  O5  O  0 1 N N N N N N -3.076 -12.553 11.133 -7.665  1.541  -0.412 O2  6BI 22 
6BI O3  O6  O  0 1 N N N N N N -3.449 -14.331 12.833 -8.436  3.858  -1.387 O3  6BI 23 
6BI O4  O7  O  0 1 N N N N N N -5.439 -13.037 12.040 -7.725  3.617  1.023  O4  6BI 24 
6BI P   P1  P  0 1 N N N N N N -3.905 -12.923 12.449 -8.427  2.920  -0.078 P   6BI 25 
6BI H1  H1  H  0 1 N N N N N N -3.316 -15.300 7.546  -4.523  -1.444 1.864  H1  6BI 26 
6BI H2  H2  H  0 1 N N N N N N -4.709 -14.220 6.013  -4.979  -3.822 1.851  H2  6BI 27 
6BI H3  H3  H  0 1 N N N N N N -4.278 -13.567 8.787  -6.871  -1.472 1.920  H3  6BI 28 
6BI H4  H4  H  0 1 N N N N N N 4.227  -20.992 3.956  3.827   0.644  -0.802 H4  6BI 29 
6BI H5  H5  H  0 1 N N N N N N 2.686  -21.052 4.875  3.835   0.228  0.929  H5  6BI 30 
6BI H7  H7  H  0 1 N N N N N N 1.980  -14.375 3.317  -0.416  -4.500 -1.100 H7  6BI 31 
6BI H8  H8  H  0 1 N N N N N N -1.969 -11.923 8.945  -7.231  -0.994 -0.936 H8  6BI 32 
6BI H9  H9  H  0 1 N N N N N N -2.685 -14.475 10.419 -8.338  0.191  0.999  H9  6BI 33 
6BI H10 H10 H  0 1 N N N N N N -1.237 -13.483 10.799 -6.777  0.965  1.362  H10 6BI 34 
6BI H11 H11 H  0 1 N N N N N N -1.409 -13.321 6.225  -4.603  -2.065 -1.142 H11 6BI 35 
6BI H12 H12 H  0 1 N N N N N N -1.655 -16.715 8.048  -3.286  1.176  0.289  H12 6BI 36 
6BI H13 H13 H  0 1 N N N N N N 4.173  -18.410 4.307  2.991   -1.627 -1.344 H13 6BI 37 
6BI H14 H14 H  0 1 N N N N N N 2.869  -18.699 3.106  3.000   -2.043 0.387  H14 6BI 38 
6BI H15 H15 H  0 1 N N N N N N 1.458  -19.011 5.039  1.460   0.299  0.042  H15 6BI 39 
6BI H16 H16 H  0 1 N N N N N N -4.080 -11.345 8.112  -6.998  -3.724 1.070  H16 6BI 40 
6BI H17 H17 H  0 1 N N N N N N -4.563 -11.520 13.714 -10.461 2.145  -0.309 H17 6BI 41 
6BI H18 H18 H  0 1 N N N N N N -4.175 -14.936 12.740 -8.880  4.708  -1.258 H18 6BI 42 
6BI C11 C13 C  0 1 N N N N N N ?      ?       ?      5.336   -0.785 -0.238 C11 6BI 43 
6BI C12 C14 C  0 1 N N N N N N ?      ?       ?      6.403   0.283  0.014  C12 6BI 44 
6BI C13 C15 C  0 1 N N N N N N ?      ?       ?      7.793   -0.337 -0.142 C13 6BI 45 
6BI C14 C16 C  0 1 N N N N N N ?      ?       ?      8.858   0.731  0.109  C14 6BI 46 
6BI N3  N6  N  0 1 N N N N N N ?      ?       ?      10.189  0.138  -0.040 N3  6BI 47 
6BI C15 C17 C  0 1 N N N N N N ?      ?       ?      11.289  0.896  0.136  C15 6BI 48 
6BI C16 C18 C  0 1 N N N N N N ?      ?       ?      12.659  0.285  -0.017 C16 6BI 49 
6BI O5  O8  O  0 1 N N N N N N ?      ?       ?      11.177  2.070  0.419  O5  6BI 50 
6BI CL1 CL1 CL 0 0 N N N N N N ?      ?       ?      13.915  1.544  0.279  CL1 6BI 51 
6BI H6  H6  H  0 1 N N N N N N ?      ?       ?      5.456   -1.595 0.483  H6  6BI 52 
6BI H19 H19 H  0 1 N N N N N N ?      ?       ?      5.448   -1.179 -1.248 H19 6BI 53 
6BI H20 H20 H  0 1 N N N N N N ?      ?       ?      6.283   1.092  -0.707 H20 6BI 54 
6BI H21 H21 H  0 1 N N N N N N ?      ?       ?      6.291   0.677  1.024  H21 6BI 55 
6BI H22 H22 H  0 1 N N N N N N ?      ?       ?      7.912   -1.146 0.578  H22 6BI 56 
6BI H23 H23 H  0 1 N N N N N N ?      ?       ?      7.904   -0.731 -1.153 H23 6BI 57 
6BI H24 H24 H  0 1 N N N N N N ?      ?       ?      8.739   1.541  -0.611 H24 6BI 58 
6BI H25 H25 H  0 1 N N N N N N ?      ?       ?      8.748   1.125  1.119  H25 6BI 59 
6BI H26 H26 H  0 1 N N N N N N ?      ?       ?      10.279  -0.801 -0.266 H26 6BI 60 
6BI H27 H27 H  0 1 N N N N N N ?      ?       ?      12.778  -0.524 0.703  H27 6BI 61 
6BI H29 H29 H  0 1 N N N N N N ?      ?       ?      12.770  -0.108 -1.028 H29 6BI 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6BI C17 N4  DOUB Y N 1  
6BI C17 N5  SING Y N 2  
6BI N4  C8  SING Y N 3  
6BI C9  C10 SING N N 4  
6BI C9  N2  SING N N 5  
6BI N5  C6  DOUB Y N 6  
6BI C8  N2  SING N N 7  
6BI C8  C7  DOUB Y N 8  
6BI C6  C7  SING Y N 9  
6BI C6  N   SING Y N 10 
6BI C7  N1  SING Y N 11 
6BI O   C   SING N N 12 
6BI N   C4  SING N N 13 
6BI N   C5  SING Y N 14 
6BI N1  C5  DOUB Y N 15 
6BI C4  C   SING N N 16 
6BI C4  O12 SING N N 17 
6BI C   C1  SING N N 18 
6BI O1  C1  SING N N 19 
6BI C1  C2  SING N N 20 
6BI O12 C2  SING N N 21 
6BI C2  C3  SING N N 22 
6BI C3  O2  SING N N 23 
6BI O2  P   SING N N 24 
6BI O4  P   DOUB N N 25 
6BI P   O3  SING N N 26 
6BI P   O11 SING N N 27 
6BI C   H1  SING N N 28 
6BI O   H2  SING N N 29 
6BI C1  H3  SING N N 30 
6BI C10 H4  SING N N 31 
6BI C10 H5  SING N N 32 
6BI C17 H7  SING N N 33 
6BI C2  H8  SING N N 34 
6BI C3  H9  SING N N 35 
6BI C3  H10 SING N N 36 
6BI C4  H11 SING N N 37 
6BI C5  H12 SING N N 38 
6BI C9  H13 SING N N 39 
6BI C9  H14 SING N N 40 
6BI N2  H15 SING N N 41 
6BI O1  H16 SING N N 42 
6BI O11 H17 SING N N 43 
6BI O3  H18 SING N N 44 
6BI C11 C10 SING N N 45 
6BI C12 C11 SING N N 46 
6BI C13 C12 SING N N 47 
6BI C14 C13 SING N N 48 
6BI N3  C14 SING N N 49 
6BI C15 N3  SING N N 50 
6BI C16 C15 SING N N 51 
6BI O5  C15 DOUB N N 52 
6BI CL1 C16 SING N N 53 
6BI C11 H6  SING N N 54 
6BI C11 H19 SING N N 55 
6BI C12 H20 SING N N 56 
6BI C12 H21 SING N N 57 
6BI C13 H22 SING N N 58 
6BI C13 H23 SING N N 59 
6BI C14 H24 SING N N 60 
6BI C14 H25 SING N N 61 
6BI N3  H26 SING N N 62 
6BI C16 H27 SING N N 63 
6BI C16 H29 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6BI InChI            InChI                1.03  "InChI=1S/C18H28ClN6O8P/c19-7-12(26)20-5-3-1-2-4-6-21-16-13-17(23-9-22-16)25(10-24-13)18-15(28)14(27)11(33-18)8-32-34(29,30)31/h9-11,14-15,18,27-28H,1-8H2,(H,20,26)(H,21,22,23)(H2,29,30,31)/t11-,14-,15-,18-/m1/s1" 
6BI InChIKey         InChI                1.03  QFONDZUXFQHEPG-XKLVTHTNSA-N                                                                                                                                                                                           
6BI SMILES_CANONICAL CACTVS               3.385 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c(NCCCCCCNC(=O)CCl)ncnc23"                                                                                                                                        
6BI SMILES           CACTVS               3.385 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c(NCCCCCCNC(=O)CCl)ncnc23"                                                                                                                                               
6BI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)NCCCCCCNC(=O)CCl"                                                                                                                                     
6BI SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)NCCCCCCNC(=O)CCl"                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           6BI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{S},4~{R},5~{R})-5-[6-[6-(2-chloranylethanoylamino)hexylamino]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6BI "Create component" 2021-07-26 PDBE 
6BI "Initial release"  2022-06-01 RCSB 
6BI "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            6BI 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C16 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
